Wall clock time and date at job start Thu Apr 9 2020 15:10:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46900 * 109.47148 * 2 1 4 4 C 1.46909 * 110.99862 * 71.47307 * 3 2 1 5 5 C 1.52994 * 109.47203 * 69.19152 * 4 3 2 6 6 C 1.46907 * 111.00265 * 195.42284 * 3 2 1 7 7 H 1.08997 * 109.46804 * 306.49283 * 6 3 2 8 8 C 1.53002 * 109.47186 * 186.49212 * 6 3 2 9 9 C 1.52999 * 109.46788 * 180.02562 * 8 6 3 10 10 C 1.53002 * 109.47093 * 60.00085 * 9 8 6 11 11 H 1.09000 * 109.47015 * 60.00120 * 10 9 8 12 12 C 1.53003 * 109.46503 * 179.97438 * 10 9 8 13 13 C 1.52997 * 109.46984 * 299.99871 * 10 9 8 14 14 C 1.52992 * 109.47370 * 60.00248 * 13 10 9 15 15 H 1.09004 * 109.47339 * 179.97438 * 14 13 10 16 16 C 1.50696 * 109.47021 * 59.99721 * 14 13 10 17 17 H 1.08004 * 120.00345 * 245.08117 * 16 14 13 18 18 C 1.37876 * 120.00063 * 65.08721 * 16 14 13 19 19 N 1.31515 * 119.99729 * 359.97438 * 18 16 14 20 20 Si 1.86797 * 120.00060 * 179.97438 * 18 16 14 21 21 H 1.48496 * 109.47401 * 89.99835 * 20 18 16 22 22 H 1.48500 * 109.47094 * 210.00156 * 20 18 16 23 23 H 1.48501 * 109.47487 * 329.99780 * 20 18 16 24 24 H 1.08994 * 109.47150 * 298.52985 * 1 2 3 25 25 H 1.08997 * 109.46785 * 58.53091 * 1 2 3 26 26 H 1.08997 * 109.47021 * 178.52697 * 1 2 3 27 27 H 1.09003 * 109.47679 * 240.00159 * 2 1 3 28 28 H 1.09005 * 109.47033 * 119.99739 * 2 1 3 29 29 H 1.08998 * 109.46743 * 189.19640 * 4 3 2 30 30 H 1.08999 * 109.46630 * 309.18914 * 4 3 2 31 31 H 1.09003 * 109.47073 * 180.15414 * 5 4 3 32 32 H 1.08994 * 109.47610 * 300.15788 * 5 4 3 33 33 H 1.09000 * 109.46992 * 60.16077 * 5 4 3 34 34 H 1.08998 * 109.47060 * 300.00504 * 8 6 3 35 35 H 1.09000 * 109.46868 * 60.00296 * 8 6 3 36 36 H 1.08997 * 109.46799 * 299.99824 * 9 8 6 37 37 H 1.08995 * 109.46840 * 180.02562 * 9 8 6 38 38 H 1.09000 * 109.46404 * 179.97438 * 12 10 9 39 39 H 1.08995 * 109.47330 * 299.99925 * 12 10 9 40 40 H 1.09000 * 109.47191 * 60.00468 * 12 10 9 41 41 H 1.08998 * 109.46998 * 299.99725 * 13 10 9 42 42 H 1.09008 * 109.46733 * 180.02562 * 13 10 9 43 43 H 0.97006 * 119.99449 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.7843 2.0266 1.3004 5 6 2.6934 1.3916 2.3544 6 6 3.4417 1.4407 -0.3647 7 1 4.0093 0.7729 0.2832 8 6 3.9554 2.8722 -0.1975 9 6 5.4361 2.9302 -0.5780 10 6 5.6059 2.4943 -2.0348 11 1 5.0379 3.1622 -2.6824 12 6 7.0867 2.5531 -2.4153 13 6 5.0921 1.0629 -2.2019 14 6 3.6114 1.0048 -1.8215 15 1 3.2452 -0.0149 -1.9410 16 6 2.8261 1.9282 -2.7169 17 1 2.3295 2.7918 -2.2997 18 6 2.7415 1.6705 -4.0687 19 7 3.3465 0.6191 -4.5768 20 14 1.7675 2.8146 -5.1784 21 1 2.6597 3.8854 -5.6909 22 1 1.2132 2.0436 -6.3201 23 1 0.6551 3.4246 -4.4066 24 1 -0.3633 0.4908 0.9028 25 1 -0.3633 0.5365 -0.8765 26 1 -0.3633 -1.0273 -0.0264 27 1 1.8934 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 2.0039 3.0916 1.2251 30 1 0.7422 1.8901 1.5895 31 1 2.5168 1.8658 3.3199 32 1 2.4758 0.3261 2.4277 33 1 3.7355 1.5306 2.0667 34 1 3.3876 3.5399 -0.8454 35 1 3.8340 3.1828 0.8402 36 1 6.0041 2.2624 0.0697 37 1 5.8022 3.9499 -0.4584 38 1 7.2076 2.2421 -3.4530 39 1 7.4522 3.5729 -2.2963 40 1 7.6550 1.8854 -1.7677 41 1 5.6602 0.3951 -1.5543 42 1 5.2135 0.7523 -3.2397 43 1 3.2872 0.4380 -5.5279 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259826864.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 15:10:59 Heat of formation + Delta-G solvation = -18.085168 kcal Electronic energy + Delta-G solvation = -19146.744741 eV Core-core repulsion = 16611.998257 eV Total energy + Delta-G solvation = -2534.746484 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 239.194 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.03099 -36.20905 -32.69005 -31.48230 -30.74790 -29.16732 -27.77421 -24.87727 -24.44661 -23.47295 -20.92646 -20.65757 -19.02006 -18.34469 -15.71261 -15.55471 -15.10645 -14.28566 -14.00018 -13.82069 -13.21916 -13.02841 -12.82901 -12.58923 -12.30249 -12.05500 -11.72540 -11.57417 -11.37523 -11.28865 -11.00648 -10.82961 -10.77157 -10.46599 -10.33535 -10.32211 -10.10010 -9.95981 -9.79985 -9.45558 -9.17566 -8.76470 -8.48230 -8.07992 -7.31299 -5.80790 -3.78163 3.40814 3.48099 3.52908 4.59785 4.68257 5.40211 5.50646 5.54461 5.66310 5.66705 5.75795 5.79389 5.91108 5.93770 6.00411 6.08732 6.09504 6.17780 6.23071 6.37667 6.40830 6.41982 6.49428 6.55038 6.60470 6.68126 6.72986 6.79859 6.83681 6.86016 6.95371 7.15827 7.21445 7.51323 7.59386 7.83272 7.88814 8.01659 8.15422 8.29405 8.70031 9.23705 9.81843 11.27914 Molecular weight = 239.19amu Principal moments of inertia in cm(-1) A = 0.017309 B = 0.011811 C = 0.008271 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1617.266873 B = 2370.191879 C = 3384.450293 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.050 3.950 3 N -0.510 5.510 4 C 0.045 3.955 5 C -0.192 4.192 6 C 0.099 3.901 7 H 0.012 0.988 8 C -0.106 4.106 9 C -0.104 4.104 10 C -0.081 4.081 11 H 0.080 0.920 12 C -0.143 4.143 13 C -0.098 4.098 14 C 0.053 3.947 15 H 0.028 0.972 16 C -0.466 4.466 17 H 0.061 0.939 18 C 0.054 3.946 19 N -0.900 5.900 20 Si 0.880 3.120 21 H -0.286 1.286 22 H -0.292 1.292 23 H -0.276 1.276 24 H 0.043 0.957 25 H 0.065 0.935 26 H 0.046 0.954 27 H 0.084 0.916 28 H 0.019 0.981 29 H 0.071 0.929 30 H 0.064 0.936 31 H 0.048 0.952 32 H 0.050 0.950 33 H 0.060 0.940 34 H 0.077 0.923 35 H 0.040 0.960 36 H 0.043 0.957 37 H 0.045 0.955 38 H 0.049 0.951 39 H 0.038 0.962 40 H 0.040 0.960 41 H 0.011 0.989 42 H 0.084 0.916 43 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.768 1.480 9.456 9.601 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.078 4.078 3 N -0.233 5.233 4 C -0.084 4.084 5 C -0.251 4.251 6 C -0.008 4.008 7 H 0.030 0.970 8 C -0.144 4.144 9 C -0.142 4.142 10 C -0.100 4.100 11 H 0.098 0.902 12 C -0.201 4.201 13 C -0.136 4.136 14 C 0.035 3.965 15 H 0.046 0.954 16 C -0.505 4.505 17 H 0.079 0.921 18 C -0.145 4.145 19 N -0.541 5.541 20 Si 0.710 3.290 21 H -0.212 1.212 22 H -0.218 1.218 23 H -0.201 1.201 24 H 0.062 0.938 25 H 0.084 0.916 26 H 0.065 0.935 27 H 0.102 0.898 28 H 0.037 0.963 29 H 0.090 0.910 30 H 0.082 0.918 31 H 0.068 0.932 32 H 0.070 0.930 33 H 0.078 0.922 34 H 0.096 0.904 35 H 0.058 0.942 36 H 0.061 0.939 37 H 0.063 0.937 38 H 0.068 0.932 39 H 0.058 0.942 40 H 0.059 0.941 41 H 0.030 0.970 42 H 0.102 0.898 43 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 0.508 1.651 8.920 9.086 hybrid contribution -0.039 0.098 -0.043 0.114 sum 0.469 1.748 8.877 9.060 Atomic orbital electron populations 1.21729 0.96033 1.00332 1.01808 1.22055 0.95214 0.90061 1.00450 1.62167 1.18994 1.16312 1.25833 1.22211 0.98456 0.99321 0.88402 1.22468 1.01742 1.01130 0.99715 1.21706 0.85303 0.95124 0.98714 0.96987 1.21603 0.95823 0.97864 0.99095 1.21491 0.96131 0.99105 0.97444 1.21034 0.93891 0.99899 0.95152 0.90194 1.21847 0.97777 0.99630 1.00800 1.21524 0.97094 0.92791 1.02199 1.18755 0.92329 0.96981 0.88460 0.95410 1.21026 1.28780 1.09524 0.91130 0.92101 1.24914 0.96048 0.95277 0.98212 1.69910 1.44657 1.27265 1.12281 0.86772 0.80625 0.81051 0.80591 1.21221 1.21795 1.20055 0.93816 0.91603 0.93455 0.89762 0.96312 0.91029 0.91785 0.93244 0.93050 0.92150 0.90424 0.94151 0.93855 0.93666 0.93202 0.94244 0.94058 0.97012 0.89792 0.93569 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.26 9.93 37.16 0.37 -1.89 16 2 C 0.05 0.91 5.46 -3.82 -0.02 0.89 16 3 N -0.51 -9.72 4.10 -226.64 -0.93 -10.65 16 4 C 0.04 0.71 5.38 -3.82 -0.02 0.69 16 5 C -0.19 -2.72 8.94 37.15 0.33 -2.39 16 6 C 0.10 1.99 0.94 -67.71 -0.06 1.93 16 7 H 0.01 0.25 6.85 -51.93 -0.36 -0.11 16 8 C -0.11 -1.99 4.16 -26.73 -0.11 -2.10 16 9 C -0.10 -1.86 5.20 -26.73 -0.14 -2.00 16 10 C -0.08 -1.65 2.50 -90.62 -0.23 -1.87 16 11 H 0.08 1.82 7.22 -51.93 -0.37 1.45 16 12 C -0.14 -2.51 9.19 37.16 0.34 -2.17 16 13 C -0.10 -2.23 4.57 -26.74 -0.12 -2.35 16 14 C 0.05 1.27 1.86 -91.78 -0.17 1.10 16 15 H 0.03 0.74 6.31 -51.93 -0.33 0.41 16 16 C -0.47 -12.11 6.25 -34.44 -0.22 -12.33 16 17 H 0.06 1.63 6.52 -52.48 -0.34 1.29 16 18 C 0.05 1.47 5.32 -17.82 -0.09 1.38 16 19 N -0.90 -25.47 11.70 55.43 0.65 -24.82 16 20 Si 0.88 21.53 29.54 -169.99 -5.02 16.51 16 21 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 22 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 23 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 24 H 0.04 0.63 6.64 -51.93 -0.34 0.28 16 25 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 26 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 27 H 0.08 1.75 5.97 -51.93 -0.31 1.44 16 28 H 0.02 0.32 6.21 -51.93 -0.32 -0.01 16 29 H 0.07 1.13 6.54 -51.93 -0.34 0.79 16 30 H 0.06 0.95 6.42 -51.93 -0.33 0.62 16 31 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.05 0.73 6.46 -51.93 -0.34 0.40 16 33 H 0.06 0.91 5.71 -51.93 -0.30 0.62 16 34 H 0.08 1.61 6.52 -51.93 -0.34 1.27 16 35 H 0.04 0.67 5.52 -51.93 -0.29 0.39 16 36 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 37 H 0.04 0.74 8.14 -51.93 -0.42 0.31 16 38 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 39 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 40 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 41 H 0.01 0.25 8.14 -51.93 -0.42 -0.18 16 42 H 0.08 2.17 6.49 -51.92 -0.34 1.83 16 43 H 0.25 7.02 8.31 -40.82 -0.34 6.68 16 LS Contribution 307.32 15.07 4.63 4.63 Total: -1.00 -26.87 307.32 -8.40 -35.27 By element: Atomic # 1 Polarization: 7.76 SS G_CDS: -7.58 Total: 0.18 kcal Atomic # 6 Polarization: -20.97 SS G_CDS: -0.14 Total: -21.11 kcal Atomic # 7 Polarization: -35.19 SS G_CDS: -0.28 Total: -35.47 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.51 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -26.87 -8.40 -35.27 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259826864.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.182 kcal (2) G-P(sol) polarization free energy of solvation -26.870 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.688 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.397 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.267 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.085 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds