Wall clock time and date at job start Thu Apr 9 2020 15:10:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46900 * 109.47148 * 2 1 4 4 C 1.46909 * 110.99862 * 71.47307 * 3 2 1 5 5 C 1.52994 * 109.47203 * 69.19152 * 4 3 2 6 6 C 1.46907 * 111.00265 * 195.42284 * 3 2 1 7 7 H 1.08997 * 109.46804 * 306.49283 * 6 3 2 8 8 C 1.53002 * 109.47186 * 186.49212 * 6 3 2 9 9 C 1.52999 * 109.46788 * 180.02562 * 8 6 3 10 10 C 1.53002 * 109.47093 * 60.00085 * 9 8 6 11 11 H 1.09000 * 109.47015 * 60.00120 * 10 9 8 12 12 C 1.53003 * 109.46503 * 179.97438 * 10 9 8 13 13 C 1.52997 * 109.46984 * 299.99871 * 10 9 8 14 14 C 1.52992 * 109.47370 * 60.00248 * 13 10 9 15 15 H 1.09004 * 109.47339 * 179.97438 * 14 13 10 16 16 C 1.50696 * 109.47021 * 59.99721 * 14 13 10 17 17 H 1.08004 * 120.00345 * 245.08117 * 16 14 13 18 18 C 1.37876 * 120.00063 * 65.08721 * 16 14 13 19 19 N 1.31515 * 119.99729 * 359.97438 * 18 16 14 20 20 Si 1.86797 * 120.00060 * 179.97438 * 18 16 14 21 21 H 1.48496 * 109.47401 * 89.99835 * 20 18 16 22 22 H 1.48500 * 109.47094 * 210.00156 * 20 18 16 23 23 H 1.48501 * 109.47487 * 329.99780 * 20 18 16 24 24 H 1.08994 * 109.47150 * 298.52985 * 1 2 3 25 25 H 1.08997 * 109.46785 * 58.53091 * 1 2 3 26 26 H 1.08997 * 109.47021 * 178.52697 * 1 2 3 27 27 H 1.09003 * 109.47679 * 240.00159 * 2 1 3 28 28 H 1.09005 * 109.47033 * 119.99739 * 2 1 3 29 29 H 1.08998 * 109.46743 * 189.19640 * 4 3 2 30 30 H 1.08999 * 109.46630 * 309.18914 * 4 3 2 31 31 H 1.09003 * 109.47073 * 180.15414 * 5 4 3 32 32 H 1.08994 * 109.47610 * 300.15788 * 5 4 3 33 33 H 1.09000 * 109.46992 * 60.16077 * 5 4 3 34 34 H 1.08998 * 109.47060 * 300.00504 * 8 6 3 35 35 H 1.09000 * 109.46868 * 60.00296 * 8 6 3 36 36 H 1.08997 * 109.46799 * 299.99824 * 9 8 6 37 37 H 1.08995 * 109.46840 * 180.02562 * 9 8 6 38 38 H 1.09000 * 109.46404 * 179.97438 * 12 10 9 39 39 H 1.08995 * 109.47330 * 299.99925 * 12 10 9 40 40 H 1.09000 * 109.47191 * 60.00468 * 12 10 9 41 41 H 1.08998 * 109.46998 * 299.99725 * 13 10 9 42 42 H 1.09008 * 109.46733 * 180.02562 * 13 10 9 43 43 H 0.97006 * 119.99449 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.7843 2.0266 1.3004 5 6 2.6934 1.3916 2.3544 6 6 3.4417 1.4407 -0.3647 7 1 4.0093 0.7729 0.2832 8 6 3.9554 2.8722 -0.1975 9 6 5.4361 2.9302 -0.5780 10 6 5.6059 2.4943 -2.0348 11 1 5.0379 3.1622 -2.6824 12 6 7.0867 2.5531 -2.4153 13 6 5.0921 1.0629 -2.2019 14 6 3.6114 1.0048 -1.8215 15 1 3.2452 -0.0149 -1.9410 16 6 2.8261 1.9282 -2.7169 17 1 2.3295 2.7918 -2.2997 18 6 2.7415 1.6705 -4.0687 19 7 3.3465 0.6191 -4.5768 20 14 1.7675 2.8146 -5.1784 21 1 2.6597 3.8854 -5.6909 22 1 1.2132 2.0436 -6.3201 23 1 0.6551 3.4246 -4.4066 24 1 -0.3633 0.4908 0.9028 25 1 -0.3633 0.5365 -0.8765 26 1 -0.3633 -1.0273 -0.0264 27 1 1.8934 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 2.0039 3.0916 1.2251 30 1 0.7422 1.8901 1.5895 31 1 2.5168 1.8658 3.3199 32 1 2.4758 0.3261 2.4277 33 1 3.7355 1.5306 2.0667 34 1 3.3876 3.5399 -0.8454 35 1 3.8340 3.1828 0.8402 36 1 6.0041 2.2624 0.0697 37 1 5.8022 3.9499 -0.4584 38 1 7.2076 2.2421 -3.4530 39 1 7.4522 3.5729 -2.2963 40 1 7.6550 1.8854 -1.7677 41 1 5.6602 0.3951 -1.5543 42 1 5.2135 0.7523 -3.2397 43 1 3.2872 0.4380 -5.5279 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259826864.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 15:10:59 Heat of formation + Delta-G solvation = -32.386770 kcal Electronic energy + Delta-G solvation = -19147.364905 eV Core-core repulsion = 16611.998257 eV Total energy + Delta-G solvation = -2535.366648 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 239.194 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.60266 -37.73051 -34.64453 -32.93874 -32.26838 -30.81244 -29.19867 -26.82331 -26.00550 -24.81830 -22.56974 -22.18376 -20.62468 -20.00730 -17.54636 -17.16772 -16.73036 -16.06265 -15.57240 -15.26837 -14.79236 -14.71653 -14.15692 -13.98440 -13.94795 -13.49362 -13.27687 -13.01373 -12.86772 -12.82990 -12.71649 -12.48411 -12.35200 -12.20659 -11.96160 -11.79947 -11.70675 -11.53065 -11.35994 -11.18990 -10.88294 -10.56233 -10.42070 -10.04501 -8.77598 -7.91525 -5.92759 1.42400 1.45138 1.53744 2.54820 3.23707 3.43350 4.08790 4.11723 4.18780 4.36622 4.41338 4.44118 4.48319 4.56868 4.63640 4.71579 4.76383 4.81071 4.84089 4.93655 4.97361 4.99890 5.11491 5.13570 5.15538 5.18275 5.26850 5.32262 5.34590 5.37431 5.46926 5.49684 5.64445 5.75590 5.88963 5.89413 6.04879 6.16613 6.51823 6.63015 6.73549 7.14810 7.69052 9.16108 Molecular weight = 239.19amu Principal moments of inertia in cm(-1) A = 0.017309 B = 0.011811 C = 0.008271 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1617.266873 B = 2370.191879 C = 3384.450293 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.052 3.948 3 N -0.533 5.533 4 C 0.044 3.956 5 C -0.184 4.184 6 C 0.109 3.891 7 H 0.014 0.986 8 C -0.100 4.100 9 C -0.099 4.099 10 C -0.079 4.079 11 H 0.048 0.952 12 C -0.137 4.137 13 C -0.093 4.093 14 C 0.052 3.948 15 H -0.011 1.011 16 C -0.455 4.455 17 H 0.053 0.947 18 C 0.006 3.994 19 N -0.929 5.929 20 Si 0.932 3.068 21 H -0.282 1.282 22 H -0.295 1.295 23 H -0.273 1.273 24 H 0.064 0.936 25 H 0.041 0.959 26 H 0.064 0.936 27 H 0.046 0.954 28 H 0.035 0.965 29 H 0.073 0.927 30 H 0.077 0.923 31 H 0.074 0.926 32 H 0.048 0.952 33 H 0.051 0.949 34 H 0.054 0.946 35 H 0.068 0.932 36 H 0.057 0.943 37 H 0.070 0.930 38 H 0.035 0.965 39 H 0.063 0.937 40 H 0.056 0.944 41 H 0.019 0.981 42 H 0.046 0.954 43 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.941 2.787 11.752 12.115 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.076 4.076 3 N -0.256 5.256 4 C -0.083 4.083 5 C -0.242 4.242 6 C 0.001 3.999 7 H 0.031 0.969 8 C -0.138 4.138 9 C -0.136 4.136 10 C -0.098 4.098 11 H 0.067 0.933 12 C -0.194 4.194 13 C -0.131 4.131 14 C 0.033 3.967 15 H 0.007 0.993 16 C -0.494 4.494 17 H 0.071 0.929 18 C -0.190 4.190 19 N -0.571 5.571 20 Si 0.760 3.240 21 H -0.208 1.208 22 H -0.221 1.221 23 H -0.197 1.197 24 H 0.083 0.917 25 H 0.061 0.939 26 H 0.083 0.917 27 H 0.064 0.936 28 H 0.053 0.947 29 H 0.092 0.908 30 H 0.095 0.905 31 H 0.093 0.907 32 H 0.067 0.933 33 H 0.070 0.930 34 H 0.073 0.927 35 H 0.086 0.914 36 H 0.076 0.924 37 H 0.089 0.911 38 H 0.054 0.946 39 H 0.082 0.918 40 H 0.075 0.925 41 H 0.038 0.962 42 H 0.065 0.935 43 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 0.675 2.970 11.230 11.636 hybrid contribution -0.124 -0.347 -0.727 0.815 sum 0.551 2.623 10.503 10.840 Atomic orbital electron populations 1.21657 0.94302 1.01417 1.01684 1.21995 0.96590 0.89722 0.99318 1.62100 1.18138 1.16906 1.28494 1.22275 0.99735 0.99146 0.87191 1.22373 1.00565 1.01039 1.00267 1.21466 0.86487 0.96069 0.95878 0.96856 1.21547 0.95993 0.96030 1.00211 1.21463 0.95810 1.00858 0.95511 1.20934 0.95218 0.97014 0.96601 0.93321 1.21772 0.95875 1.01532 1.00258 1.21388 0.96782 0.95032 0.99945 1.18694 0.92501 0.94404 0.91055 0.99312 1.21169 1.27856 1.09020 0.91319 0.92890 1.25526 0.97266 0.96527 0.99652 1.70050 1.46210 1.28795 1.12091 0.85947 0.79524 0.79514 0.78977 1.20811 1.22129 1.19745 0.91676 0.93934 0.91737 0.93553 0.94720 0.90822 0.90490 0.90684 0.93283 0.93017 0.92742 0.91371 0.92386 0.91148 0.94561 0.91804 0.92541 0.96192 0.93538 0.94053 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.11 9.93 71.98 0.72 -3.39 16 2 C 0.05 1.86 5.46 86.30 0.47 2.33 16 3 N -0.53 -19.89 4.10 -870.94 -3.57 -23.47 16 4 C 0.04 1.28 5.38 86.30 0.46 1.75 16 5 C -0.18 -4.59 8.94 71.98 0.64 -3.95 16 6 C 0.11 4.33 0.94 44.92 0.04 4.37 16 7 H 0.01 0.54 6.85 -2.39 -0.02 0.52 16 8 C -0.10 -3.56 4.16 30.59 0.13 -3.43 16 9 C -0.10 -3.28 5.20 30.59 0.16 -3.12 16 10 C -0.08 -3.15 2.50 -10.79 -0.03 -3.18 16 11 H 0.05 2.23 7.22 -2.39 -0.02 2.21 16 12 C -0.14 -4.58 9.19 71.98 0.66 -3.92 16 13 C -0.09 -4.33 4.57 30.59 0.14 -4.19 16 14 C 0.05 2.55 1.86 -11.54 -0.02 2.53 16 15 H -0.01 -0.63 6.31 -2.38 -0.02 -0.64 16 16 C -0.45 -24.31 6.25 25.60 0.16 -24.15 16 17 H 0.05 2.88 6.52 -2.91 -0.02 2.86 16 18 C 0.01 0.33 5.32 84.65 0.45 0.78 16 19 N -0.93 -54.80 11.70 21.45 0.25 -54.55 16 20 Si 0.93 45.21 29.54 68.60 2.03 47.23 16 21 H -0.28 -13.40 7.11 99.48 0.71 -12.70 16 22 H -0.29 -14.37 7.11 99.48 0.71 -13.66 16 23 H -0.27 -12.97 7.11 99.48 0.71 -12.26 16 24 H 0.06 1.72 6.64 -2.39 -0.02 1.70 16 25 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 26 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 27 H 0.05 2.01 5.97 -2.39 -0.01 2.00 16 28 H 0.03 1.13 6.21 -2.38 -0.01 1.11 16 29 H 0.07 2.11 6.54 -2.39 -0.02 2.09 16 30 H 0.08 2.04 6.42 -2.39 -0.02 2.02 16 31 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 32 H 0.05 1.25 6.46 -2.39 -0.02 1.23 16 33 H 0.05 1.39 5.71 -2.39 -0.01 1.37 16 34 H 0.05 2.20 6.52 -2.39 -0.02 2.18 16 35 H 0.07 2.05 5.52 -2.39 -0.01 2.04 16 36 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 37 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 38 H 0.04 1.28 8.14 -2.39 -0.02 1.26 16 39 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 40 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 41 H 0.02 0.86 8.14 -2.39 -0.02 0.84 16 42 H 0.05 2.50 6.49 -2.38 -0.02 2.49 16 43 H 0.25 14.38 8.31 -92.70 -0.77 13.61 16 Total: -1.00 -59.78 307.32 3.65 -56.14 By element: Atomic # 1 Polarization: 11.25 SS G_CDS: 0.96 Total: 12.21 kcal Atomic # 6 Polarization: -41.55 SS G_CDS: 3.99 Total: -37.56 kcal Atomic # 7 Polarization: -74.70 SS G_CDS: -3.32 Total: -78.02 kcal Atomic # 14 Polarization: 45.21 SS G_CDS: 2.03 Total: 47.23 kcal Total: -59.78 3.65 -56.14 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259826864.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.750 kcal (2) G-P(sol) polarization free energy of solvation -59.784 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.034 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.647 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.137 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.387 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds