Wall clock time and date at job start Thu Apr 9 2020 15:11:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46901 * 109.47111 * 2 1 4 4 C 1.46896 * 110.99779 * 66.05016 * 3 2 1 5 5 C 1.52999 * 109.46799 * 200.27676 * 4 3 2 6 6 C 1.46904 * 110.99708 * 190.00390 * 3 2 1 7 7 H 1.08992 * 109.47252 * 37.15964 * 6 3 2 8 8 C 1.53004 * 109.46563 * 277.16300 * 6 3 2 9 9 C 1.53002 * 109.46611 * 180.02562 * 8 6 3 10 10 C 1.52998 * 109.47035 * 60.00268 * 9 8 6 11 11 H 1.08997 * 109.47512 * 60.00125 * 10 9 8 12 12 C 1.53002 * 109.47035 * 179.97438 * 10 9 8 13 13 C 1.53005 * 109.47250 * 299.99762 * 10 9 8 14 14 C 1.52994 * 109.46980 * 59.99918 * 13 10 9 15 15 H 1.09003 * 109.47212 * 59.99979 * 14 13 10 16 16 C 1.50696 * 109.47154 * 180.02562 * 14 13 10 17 17 H 1.08001 * 120.00474 * 120.00173 * 16 14 13 18 18 C 1.37879 * 120.00215 * 300.00327 * 16 14 13 19 19 N 1.31515 * 119.99989 * 179.97438 * 18 16 14 20 20 Si 1.86800 * 119.99628 * 359.97438 * 18 16 14 21 21 H 1.48498 * 109.47020 * 90.00397 * 20 18 16 22 22 H 1.48498 * 109.47279 * 209.99928 * 20 18 16 23 23 H 1.48500 * 109.47269 * 330.00157 * 20 18 16 24 24 H 1.09000 * 109.46784 * 59.99506 * 1 2 3 25 25 H 1.08995 * 109.47455 * 180.02562 * 1 2 3 26 26 H 1.09008 * 109.46566 * 299.99999 * 1 2 3 27 27 H 1.08994 * 109.46732 * 239.99977 * 2 1 3 28 28 H 1.08994 * 109.47107 * 120.00202 * 2 1 3 29 29 H 1.09000 * 109.47399 * 320.27228 * 4 3 2 30 30 H 1.08998 * 109.47374 * 80.27913 * 4 3 2 31 31 H 1.08995 * 109.47439 * 35.82319 * 5 4 3 32 32 H 1.09001 * 109.47446 * 155.82271 * 5 4 3 33 33 H 1.09000 * 109.47202 * 275.81967 * 5 4 3 34 34 H 1.09003 * 109.47358 * 60.00477 * 8 6 3 35 35 H 1.08997 * 109.47503 * 299.99645 * 8 6 3 36 36 H 1.09004 * 109.47094 * 180.02562 * 9 8 6 37 37 H 1.08998 * 109.47776 * 300.00023 * 9 8 6 38 38 H 1.08998 * 109.47776 * 59.99754 * 12 10 9 39 39 H 1.09002 * 109.47147 * 180.02562 * 12 10 9 40 40 H 1.09000 * 109.46993 * 299.99191 * 12 10 9 41 41 H 1.09001 * 109.47392 * 180.02562 * 13 10 9 42 42 H 1.09000 * 109.46519 * 300.00230 * 13 10 9 43 43 H 0.97007 * 119.99316 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.6703 2.0668 1.2533 5 6 1.7249 3.5812 1.0423 6 6 3.4686 1.4311 -0.2383 7 1 3.7429 0.6613 -0.9594 8 6 4.2097 1.1847 1.0774 9 6 5.7187 1.2333 0.8294 10 6 6.1010 2.6085 0.2785 11 1 5.8264 3.3781 0.9999 12 6 7.6101 2.6574 0.0311 13 6 5.3597 2.8550 -1.0371 14 6 3.8508 2.8063 -0.7891 15 1 3.5761 3.5758 -0.0677 16 6 3.1207 3.0484 -2.0850 17 1 2.4511 2.2967 -2.4762 18 6 3.3076 4.2295 -2.7714 19 7 2.6708 4.4405 -3.9026 20 14 4.4653 5.5299 -2.0945 21 1 5.8340 5.2964 -2.6209 22 1 3.9970 6.8756 -2.5128 23 1 4.4851 5.4515 -0.6117 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8901 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8899 29 1 0.6636 1.7782 1.5556 30 1 2.3788 1.7826 2.0314 31 1 1.3791 3.8207 0.0369 32 1 1.0840 4.0734 1.7738 33 1 2.7507 3.9286 1.1661 34 1 3.9371 0.2051 1.4702 35 1 3.9355 1.9545 1.7987 36 1 6.2468 1.0573 1.7666 37 1 5.9935 0.4638 0.1080 38 1 7.8852 1.8878 -0.6901 39 1 7.8825 3.6373 -0.3609 40 1 8.1378 2.4821 0.9686 41 1 5.6324 3.8345 -1.4298 42 1 5.6344 2.0854 -1.7585 43 1 2.8026 5.2714 -4.3856 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259826866.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 15:11:01 Heat of formation + Delta-G solvation = -1.626699 kcal Electronic energy + Delta-G solvation = -19191.654470 eV Core-core repulsion = 16657.621678 eV Total energy + Delta-G solvation = -2534.032792 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 239.194 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.34147 -36.21007 -32.91085 -31.69748 -30.77208 -30.15773 -28.18192 -25.06936 -24.26441 -22.86356 -22.06664 -20.07189 -19.47396 -18.73750 -16.45847 -15.71040 -15.19833 -14.43658 -14.17263 -13.89042 -13.60857 -13.10504 -13.00760 -12.74996 -12.38944 -12.24808 -11.92274 -11.70172 -11.63358 -11.39130 -11.18949 -10.91499 -10.87781 -10.60436 -10.56435 -10.39898 -10.24948 -10.03020 -9.87295 -9.66788 -9.32961 -8.91228 -8.60619 -8.32105 -7.35302 -5.86356 -3.79086 3.36275 3.47182 3.48804 4.55277 4.57018 5.18574 5.26433 5.38786 5.43300 5.48961 5.59417 5.61545 5.73810 5.79669 5.85701 5.90777 5.99619 6.10273 6.10712 6.15306 6.19259 6.22457 6.28613 6.33730 6.42893 6.45012 6.47983 6.53469 6.61920 6.63568 6.70570 6.75139 6.98235 7.04171 7.18677 7.21143 7.68017 7.90093 7.97896 8.06031 8.80680 9.27497 9.77802 11.27809 Molecular weight = 239.19amu Principal moments of inertia in cm(-1) A = 0.017648 B = 0.012368 C = 0.008678 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1586.168970 B = 2263.328868 C = 3225.664085 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.052 3.948 3 N -0.509 5.509 4 C 0.044 3.956 5 C -0.151 4.151 6 C 0.108 3.892 7 H 0.068 0.932 8 C -0.154 4.154 9 C -0.101 4.101 10 C -0.098 4.098 11 H 0.060 0.940 12 C -0.145 4.145 13 C -0.116 4.116 14 C 0.012 3.988 15 H 0.045 0.955 16 C -0.473 4.473 17 H 0.079 0.921 18 C 0.063 3.937 19 N -0.909 5.909 20 Si 0.877 3.123 21 H -0.284 1.284 22 H -0.303 1.303 23 H -0.268 1.268 24 H 0.066 0.934 25 H 0.048 0.952 26 H 0.050 0.950 27 H 0.069 0.931 28 H 0.018 0.982 29 H 0.061 0.939 30 H 0.035 0.965 31 H 0.085 0.915 32 H 0.037 0.963 33 H 0.056 0.944 34 H 0.046 0.954 35 H 0.066 0.934 36 H 0.048 0.952 37 H 0.057 0.943 38 H 0.052 0.948 39 H 0.049 0.951 40 H 0.045 0.955 41 H 0.047 0.953 42 H 0.057 0.943 43 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.620 -6.326 10.977 12.937 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.076 4.076 3 N -0.231 5.231 4 C -0.083 4.083 5 C -0.208 4.208 6 C 0.000 4.000 7 H 0.086 0.914 8 C -0.193 4.193 9 C -0.139 4.139 10 C -0.117 4.117 11 H 0.079 0.921 12 C -0.203 4.203 13 C -0.154 4.154 14 C -0.007 4.007 15 H 0.063 0.937 16 C -0.511 4.511 17 H 0.097 0.903 18 C -0.136 4.136 19 N -0.550 5.550 20 Si 0.709 3.291 21 H -0.211 1.211 22 H -0.231 1.231 23 H -0.193 1.193 24 H 0.085 0.915 25 H 0.067 0.933 26 H 0.069 0.931 27 H 0.087 0.913 28 H 0.036 0.964 29 H 0.079 0.921 30 H 0.053 0.947 31 H 0.104 0.896 32 H 0.056 0.944 33 H 0.074 0.926 34 H 0.065 0.935 35 H 0.085 0.915 36 H 0.067 0.933 37 H 0.076 0.924 38 H 0.071 0.929 39 H 0.068 0.932 40 H 0.064 0.936 41 H 0.065 0.935 42 H 0.076 0.924 43 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 2.330 -5.961 10.439 12.245 hybrid contribution 1.143 0.385 0.886 1.497 sum 3.473 -5.575 11.326 13.093 Atomic orbital electron populations 1.21812 0.95687 1.00422 1.02516 1.22031 0.95537 0.90469 0.99594 1.62217 1.14399 1.13221 1.33300 1.22217 0.99427 0.95765 0.90930 1.22036 1.01065 0.94461 1.03279 1.21662 0.84578 1.00245 0.93541 0.91416 1.22322 0.96086 1.00266 1.00651 1.21437 0.95506 0.97344 0.99627 1.21252 0.94509 0.96811 0.99120 0.92141 1.21838 0.96389 1.01434 1.00604 1.22079 0.98309 1.00404 0.94579 1.19508 0.90368 0.92696 0.98114 0.93749 1.20954 1.24202 1.02706 1.03242 0.90295 1.24984 0.95885 0.97887 0.94858 1.69902 1.43613 1.25589 1.15849 0.87018 0.81077 0.81106 0.79903 1.21120 1.23066 1.19288 0.91538 0.93297 0.93091 0.91267 0.96394 0.92063 0.94740 0.89574 0.94393 0.92570 0.93498 0.91539 0.93295 0.92393 0.92878 0.93201 0.93601 0.93507 0.92449 0.93195 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.09 9.89 37.16 0.37 -1.72 16 2 C 0.05 0.83 5.47 -3.82 -0.02 0.81 16 3 N -0.51 -9.50 3.87 -226.65 -0.88 -10.37 16 4 C 0.04 0.74 5.11 -3.83 -0.02 0.72 16 5 C -0.15 -2.75 8.52 37.16 0.32 -2.43 16 6 C 0.11 2.08 1.56 -67.71 -0.11 1.98 16 7 H 0.07 1.38 7.68 -51.93 -0.40 0.98 16 8 C -0.15 -2.51 4.17 -26.73 -0.11 -2.62 16 9 C -0.10 -1.55 5.20 -26.73 -0.14 -1.69 16 10 C -0.10 -1.70 2.72 -90.62 -0.25 -1.94 16 11 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 12 C -0.15 -2.18 9.19 37.16 0.34 -1.84 16 13 C -0.12 -2.45 3.96 -26.73 -0.11 -2.55 16 14 C 0.01 0.27 0.81 -91.78 -0.07 0.19 16 15 H 0.04 1.03 3.40 -51.93 -0.18 0.86 16 16 C -0.47 -12.91 8.55 -34.44 -0.29 -13.20 16 17 H 0.08 2.40 7.91 -52.49 -0.42 1.98 16 18 C 0.06 1.81 5.45 -17.82 -0.10 1.71 16 19 N -0.91 -28.13 13.96 55.43 0.77 -27.35 16 20 Si 0.88 22.22 24.37 -169.99 -4.14 18.08 16 21 H -0.28 -7.08 6.87 56.52 0.39 -6.69 16 22 H -0.30 -7.82 7.11 56.52 0.40 -7.41 16 23 H -0.27 -6.45 6.53 56.52 0.37 -6.08 16 24 H 0.07 1.06 8.14 -51.93 -0.42 0.63 16 25 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 26 H 0.05 0.69 6.25 -51.92 -0.32 0.36 16 27 H 0.07 1.13 7.81 -51.93 -0.41 0.73 16 28 H 0.02 0.26 7.57 -51.93 -0.39 -0.13 16 29 H 0.06 0.94 5.87 -51.93 -0.30 0.63 16 30 H 0.03 0.55 5.17 -51.93 -0.27 0.28 16 31 H 0.09 1.86 7.81 -51.93 -0.41 1.46 16 32 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.06 1.06 5.92 -51.93 -0.31 0.76 16 34 H 0.05 0.70 7.53 -51.93 -0.39 0.31 16 35 H 0.07 1.09 6.00 -51.93 -0.31 0.78 16 36 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 37 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 38 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 39 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 40 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 41 H 0.05 1.07 3.27 -51.93 -0.17 0.90 16 42 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 43 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 LS Contribution 305.23 15.07 4.60 4.60 Total: -1.00 -29.20 305.23 -7.52 -36.72 By element: Atomic # 1 Polarization: 8.59 SS G_CDS: -7.68 Total: 0.91 kcal Atomic # 6 Polarization: -22.40 SS G_CDS: -0.19 Total: -22.58 kcal Atomic # 7 Polarization: -37.62 SS G_CDS: -0.10 Total: -37.72 kcal Atomic # 14 Polarization: 22.22 SS G_CDS: -4.14 Total: 18.08 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -29.20 -7.52 -36.72 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259826866.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.089 kcal (2) G-P(sol) polarization free energy of solvation -29.198 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.891 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.517 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.716 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.627 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds