Wall clock time and date at job start Thu Apr 9 2020 15:11:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46901 * 109.47111 * 2 1 4 4 C 1.46896 * 110.99779 * 66.05016 * 3 2 1 5 5 C 1.52999 * 109.46799 * 200.27676 * 4 3 2 6 6 C 1.46904 * 110.99708 * 190.00390 * 3 2 1 7 7 H 1.08992 * 109.47252 * 37.15964 * 6 3 2 8 8 C 1.53004 * 109.46563 * 277.16300 * 6 3 2 9 9 C 1.53002 * 109.46611 * 180.02562 * 8 6 3 10 10 C 1.52998 * 109.47035 * 60.00268 * 9 8 6 11 11 H 1.08997 * 109.47512 * 60.00125 * 10 9 8 12 12 C 1.53002 * 109.47035 * 179.97438 * 10 9 8 13 13 C 1.53005 * 109.47250 * 299.99762 * 10 9 8 14 14 C 1.52994 * 109.46980 * 59.99918 * 13 10 9 15 15 H 1.09003 * 109.47212 * 59.99979 * 14 13 10 16 16 C 1.50696 * 109.47154 * 180.02562 * 14 13 10 17 17 H 1.08001 * 120.00474 * 120.00173 * 16 14 13 18 18 C 1.37879 * 120.00215 * 300.00327 * 16 14 13 19 19 N 1.31515 * 119.99989 * 179.97438 * 18 16 14 20 20 Si 1.86800 * 119.99628 * 359.97438 * 18 16 14 21 21 H 1.48498 * 109.47020 * 90.00397 * 20 18 16 22 22 H 1.48498 * 109.47279 * 209.99928 * 20 18 16 23 23 H 1.48500 * 109.47269 * 330.00157 * 20 18 16 24 24 H 1.09000 * 109.46784 * 59.99506 * 1 2 3 25 25 H 1.08995 * 109.47455 * 180.02562 * 1 2 3 26 26 H 1.09008 * 109.46566 * 299.99999 * 1 2 3 27 27 H 1.08994 * 109.46732 * 239.99977 * 2 1 3 28 28 H 1.08994 * 109.47107 * 120.00202 * 2 1 3 29 29 H 1.09000 * 109.47399 * 320.27228 * 4 3 2 30 30 H 1.08998 * 109.47374 * 80.27913 * 4 3 2 31 31 H 1.08995 * 109.47439 * 35.82319 * 5 4 3 32 32 H 1.09001 * 109.47446 * 155.82271 * 5 4 3 33 33 H 1.09000 * 109.47202 * 275.81967 * 5 4 3 34 34 H 1.09003 * 109.47358 * 60.00477 * 8 6 3 35 35 H 1.08997 * 109.47503 * 299.99645 * 8 6 3 36 36 H 1.09004 * 109.47094 * 180.02562 * 9 8 6 37 37 H 1.08998 * 109.47776 * 300.00023 * 9 8 6 38 38 H 1.08998 * 109.47776 * 59.99754 * 12 10 9 39 39 H 1.09002 * 109.47147 * 180.02562 * 12 10 9 40 40 H 1.09000 * 109.46993 * 299.99191 * 12 10 9 41 41 H 1.09001 * 109.47392 * 180.02562 * 13 10 9 42 42 H 1.09000 * 109.46519 * 300.00230 * 13 10 9 43 43 H 0.97007 * 119.99316 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.6703 2.0668 1.2533 5 6 1.7249 3.5812 1.0423 6 6 3.4686 1.4311 -0.2383 7 1 3.7429 0.6613 -0.9594 8 6 4.2097 1.1847 1.0774 9 6 5.7187 1.2333 0.8294 10 6 6.1010 2.6085 0.2785 11 1 5.8264 3.3781 0.9999 12 6 7.6101 2.6574 0.0311 13 6 5.3597 2.8550 -1.0371 14 6 3.8508 2.8063 -0.7891 15 1 3.5761 3.5758 -0.0677 16 6 3.1207 3.0484 -2.0850 17 1 2.4511 2.2967 -2.4762 18 6 3.3076 4.2295 -2.7714 19 7 2.6708 4.4405 -3.9026 20 14 4.4653 5.5299 -2.0945 21 1 5.8340 5.2964 -2.6209 22 1 3.9970 6.8756 -2.5128 23 1 4.4851 5.4515 -0.6117 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8901 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8899 29 1 0.6636 1.7782 1.5556 30 1 2.3788 1.7826 2.0314 31 1 1.3791 3.8207 0.0369 32 1 1.0840 4.0734 1.7738 33 1 2.7507 3.9286 1.1661 34 1 3.9371 0.2051 1.4702 35 1 3.9355 1.9545 1.7987 36 1 6.2468 1.0573 1.7666 37 1 5.9935 0.4638 0.1080 38 1 7.8852 1.8878 -0.6901 39 1 7.8825 3.6373 -0.3609 40 1 8.1378 2.4821 0.9686 41 1 5.6324 3.8345 -1.4298 42 1 5.6344 2.0854 -1.7585 43 1 2.8026 5.2714 -4.3856 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259826866.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 15:11:00 Heat of formation + Delta-G solvation = -19.632184 kcal Electronic energy + Delta-G solvation = -19192.435246 eV Core-core repulsion = 16657.621678 eV Total energy + Delta-G solvation = -2534.813568 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 239.194 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.81123 -37.58966 -34.89263 -33.10811 -32.14955 -31.92782 -29.49536 -26.73702 -25.92861 -24.23342 -23.44906 -21.65803 -20.86621 -20.27898 -18.56117 -17.15404 -16.79352 -15.93196 -15.56363 -15.45082 -15.05088 -14.81641 -14.52710 -14.16586 -13.91790 -13.84305 -13.29451 -13.07825 -12.96089 -12.82464 -12.70606 -12.44722 -12.31819 -12.19078 -12.03214 -11.93047 -11.78511 -11.58280 -11.43337 -11.23467 -11.02341 -10.61502 -10.48893 -10.42107 -8.72249 -8.12400 -6.07008 1.31167 1.36208 1.45680 2.41610 3.15574 3.29517 3.85736 3.97941 4.10816 4.17538 4.25103 4.32305 4.44723 4.52954 4.57793 4.65917 4.68053 4.71015 4.79306 4.85314 4.89207 4.92812 4.93321 5.02094 5.03993 5.09611 5.15120 5.23122 5.26445 5.30002 5.34562 5.41240 5.44603 5.56705 5.58089 5.65479 5.88318 5.95208 6.49015 6.59893 6.67071 7.00812 7.52726 9.05794 Molecular weight = 239.19amu Principal moments of inertia in cm(-1) A = 0.017648 B = 0.012368 C = 0.008678 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1586.168970 B = 2263.328868 C = 3225.664085 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.053 3.947 3 N -0.543 5.543 4 C 0.047 3.953 5 C -0.146 4.146 6 C 0.111 3.889 7 H 0.048 0.952 8 C -0.145 4.145 9 C -0.097 4.097 10 C -0.095 4.095 11 H 0.061 0.939 12 C -0.143 4.143 13 C -0.117 4.117 14 C 0.012 3.988 15 H 0.044 0.956 16 C -0.457 4.457 17 H 0.033 0.967 18 C 0.002 3.998 19 N -0.963 5.963 20 Si 0.938 3.062 21 H -0.277 1.277 22 H -0.310 1.310 23 H -0.247 1.247 24 H 0.038 0.962 25 H 0.074 0.926 26 H 0.061 0.939 27 H 0.054 0.946 28 H 0.041 0.959 29 H 0.078 0.922 30 H 0.056 0.944 31 H 0.040 0.960 32 H 0.065 0.935 33 H 0.047 0.953 34 H 0.067 0.933 35 H 0.071 0.929 36 H 0.081 0.919 37 H 0.058 0.942 38 H 0.055 0.945 39 H 0.042 0.958 40 H 0.074 0.926 41 H 0.027 0.973 42 H 0.045 0.955 43 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.062 -7.280 14.437 16.671 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.075 4.075 3 N -0.266 5.266 4 C -0.081 4.081 5 C -0.203 4.203 6 C 0.003 3.997 7 H 0.066 0.934 8 C -0.183 4.183 9 C -0.135 4.135 10 C -0.114 4.114 11 H 0.080 0.920 12 C -0.200 4.200 13 C -0.155 4.155 14 C -0.007 4.007 15 H 0.062 0.938 16 C -0.496 4.496 17 H 0.051 0.949 18 C -0.192 4.192 19 N -0.606 5.606 20 Si 0.767 3.233 21 H -0.204 1.204 22 H -0.239 1.239 23 H -0.171 1.171 24 H 0.057 0.943 25 H 0.093 0.907 26 H 0.080 0.920 27 H 0.073 0.927 28 H 0.060 0.940 29 H 0.096 0.904 30 H 0.073 0.927 31 H 0.060 0.940 32 H 0.084 0.916 33 H 0.066 0.934 34 H 0.086 0.914 35 H 0.089 0.911 36 H 0.100 0.900 37 H 0.077 0.923 38 H 0.074 0.926 39 H 0.061 0.939 40 H 0.093 0.907 41 H 0.046 0.954 42 H 0.064 0.936 43 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 3.782 -6.938 13.928 16.013 hybrid contribution 0.594 0.605 -0.240 0.881 sum 4.376 -6.333 13.688 15.704 Atomic orbital electron populations 1.21767 0.94523 1.01874 1.01647 1.22047 0.96452 0.89040 0.99952 1.62101 1.14159 1.15297 1.35030 1.22248 1.00972 0.94304 0.90543 1.21954 1.00802 0.96231 1.01356 1.21458 0.85846 0.97329 0.95061 0.93377 1.22209 0.96283 1.01487 0.98366 1.21437 0.95018 0.95967 1.01102 1.21207 0.95589 0.98162 0.96415 0.92033 1.21812 0.94730 1.01251 1.02220 1.21983 0.97593 0.98909 0.96982 1.19465 0.90933 0.94950 0.95303 0.93829 1.21197 1.22657 1.00970 1.04794 0.94894 1.25739 0.97859 1.00392 0.95186 1.70074 1.46298 1.26357 1.17883 0.86016 0.79087 0.77750 0.80401 1.20355 1.23928 1.17062 0.94255 0.90711 0.92017 0.92705 0.94043 0.90385 0.92660 0.94035 0.91636 0.93448 0.91402 0.91093 0.90049 0.92292 0.92620 0.93885 0.90700 0.95443 0.93604 0.93511 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.81 9.89 71.98 0.71 -3.10 16 2 C 0.05 1.61 5.47 86.30 0.47 2.08 16 3 N -0.54 -19.93 3.87 -871.00 -3.37 -23.30 16 4 C 0.05 1.46 5.11 86.30 0.44 1.90 16 5 C -0.15 -5.15 8.52 71.98 0.61 -4.53 16 6 C 0.11 4.22 1.56 44.92 0.07 4.29 16 7 H 0.05 1.97 7.68 -2.39 -0.02 1.96 16 8 C -0.14 -4.18 4.17 30.60 0.13 -4.05 16 9 C -0.10 -2.59 5.20 30.59 0.16 -2.44 16 10 C -0.10 -2.99 2.72 -10.79 -0.03 -3.02 16 11 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 12 C -0.14 -3.78 9.19 71.98 0.66 -3.11 16 13 C -0.12 -4.84 3.96 30.59 0.12 -4.72 16 14 C 0.01 0.55 0.81 -11.54 -0.01 0.54 16 15 H 0.04 2.00 3.40 -2.39 -0.01 2.00 16 16 C -0.46 -26.11 8.55 25.60 0.22 -25.89 16 17 H 0.03 2.13 7.91 -2.91 -0.02 2.11 16 18 C 0.00 0.12 5.45 84.66 0.46 0.58 16 19 N -0.96 -62.63 13.96 21.45 0.30 -62.33 16 20 Si 0.94 47.05 24.37 68.60 1.67 48.72 16 21 H -0.28 -13.43 6.87 99.48 0.68 -12.75 16 22 H -0.31 -15.85 7.11 99.48 0.71 -15.14 16 23 H -0.25 -11.36 6.53 99.48 0.65 -10.71 16 24 H 0.04 1.26 8.14 -2.39 -0.02 1.24 16 25 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 26 H 0.06 1.52 6.25 -2.38 -0.01 1.51 16 27 H 0.05 1.79 7.81 -2.39 -0.02 1.78 16 28 H 0.04 1.08 7.57 -2.39 -0.02 1.06 16 29 H 0.08 2.16 5.87 -2.39 -0.01 2.15 16 30 H 0.06 1.52 5.17 -2.39 -0.01 1.51 16 31 H 0.04 1.82 7.81 -2.39 -0.02 1.80 16 32 H 0.06 1.89 8.14 -2.39 -0.02 1.88 16 33 H 0.05 1.72 5.92 -2.39 -0.01 1.71 16 34 H 0.07 1.72 7.53 -2.39 -0.02 1.70 16 35 H 0.07 2.02 6.00 -2.39 -0.01 2.01 16 36 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 37 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 38 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 39 H 0.04 1.18 8.14 -2.39 -0.02 1.16 16 40 H 0.07 1.56 8.14 -2.39 -0.02 1.55 16 41 H 0.03 1.23 3.27 -2.39 -0.01 1.23 16 42 H 0.05 1.96 8.14 -2.39 -0.02 1.94 16 43 H 0.26 15.85 8.31 -92.70 -0.77 15.08 16 Total: -1.00 -66.91 305.23 3.49 -63.42 By element: Atomic # 1 Polarization: 14.07 SS G_CDS: 0.87 Total: 14.95 kcal Atomic # 6 Polarization: -45.48 SS G_CDS: 4.02 Total: -41.46 kcal Atomic # 7 Polarization: -82.56 SS G_CDS: -3.07 Total: -85.63 kcal Atomic # 14 Polarization: 47.05 SS G_CDS: 1.67 Total: 48.72 kcal Total: -66.91 3.49 -63.42 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259826866.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.783 kcal (2) G-P(sol) polarization free energy of solvation -66.910 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.127 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.495 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.415 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.632 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds