Wall clock time and date at job start Thu Apr 9 2020 15:11:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46908 * 109.47156 * 2 1 4 4 C 1.46901 * 110.99967 * 78.72371 * 3 2 1 5 5 C 1.52994 * 109.47005 * 195.34131 * 4 3 2 6 6 C 1.46901 * 110.99659 * 202.67987 * 3 2 1 7 7 H 1.09007 * 109.46287 * 175.62843 * 6 3 2 8 8 C 1.52997 * 109.47487 * 55.63085 * 6 3 2 9 9 C 1.52997 * 109.47002 * 179.97438 * 8 6 3 10 10 C 1.53000 * 109.47290 * 59.99722 * 9 8 6 11 11 H 1.09006 * 109.47089 * 180.02562 * 10 9 8 12 12 C 1.53001 * 109.47310 * 60.00136 * 10 9 8 13 13 C 1.52998 * 109.47139 * 299.99740 * 10 9 8 14 14 C 1.52999 * 109.47143 * 295.62043 * 6 3 2 15 15 H 1.09000 * 109.47567 * 300.00902 * 14 6 3 16 16 C 1.50701 * 109.46717 * 60.00657 * 14 6 3 17 17 H 1.07997 * 120.00218 * 24.00665 * 16 14 6 18 18 C 1.37881 * 119.99934 * 204.00448 * 16 14 6 19 19 N 1.31509 * 119.99961 * 0.02562 * 18 16 14 20 20 Si 1.86795 * 119.99872 * 180.02562 * 18 16 14 21 21 H 1.48499 * 109.47198 * 60.00253 * 20 18 16 22 22 H 1.48497 * 109.47041 * 179.97438 * 20 18 16 23 23 H 1.48493 * 109.47441 * 300.00066 * 20 18 16 24 24 H 1.08999 * 109.47033 * 300.00182 * 1 2 3 25 25 H 1.09002 * 109.46910 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.47094 * 60.00279 * 1 2 3 27 27 H 1.09004 * 109.47513 * 119.99794 * 2 1 3 28 28 H 1.08998 * 109.47223 * 240.00333 * 2 1 3 29 29 H 1.09003 * 109.47074 * 315.33892 * 4 3 2 30 30 H 1.08995 * 109.47052 * 75.33747 * 4 3 2 31 31 H 1.08996 * 109.47532 * 174.54722 * 5 4 3 32 32 H 1.08998 * 109.46968 * 294.55033 * 5 4 3 33 33 H 1.09000 * 109.47336 * 54.54739 * 5 4 3 34 34 H 1.09005 * 109.46645 * 299.99244 * 8 6 3 35 35 H 1.08998 * 109.47508 * 59.99416 * 8 6 3 36 36 H 1.09000 * 109.47140 * 179.97438 * 9 8 6 37 37 H 1.08995 * 109.46838 * 299.99302 * 9 8 6 38 38 H 1.08999 * 109.47111 * 86.82478 * 12 10 9 39 39 H 1.09004 * 109.46862 * 206.82570 * 12 10 9 40 40 H 1.08995 * 109.46517 * 326.82167 * 12 10 9 41 41 H 1.08998 * 109.47321 * 180.02562 * 13 10 9 42 42 H 1.09005 * 109.47017 * 300.00505 * 13 10 9 43 43 H 0.96999 * 120.00594 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3851 0.0000 4 6 1.9423 1.9708 1.3450 5 6 2.0874 3.4908 1.2484 6 6 3.3882 1.4595 -0.5288 7 1 3.6976 2.5029 -0.5903 8 6 3.4310 0.8319 -1.9235 9 6 4.8562 0.9101 -2.4744 10 6 5.8048 0.1512 -1.5443 11 1 6.8203 0.2073 -1.9366 12 6 5.3712 -1.3135 -1.4579 13 6 5.7621 0.7789 -0.1497 14 6 4.3364 0.7004 0.4015 15 1 4.3059 1.1476 1.3951 16 6 3.9086 -0.7421 0.4865 17 1 3.3316 -1.1823 -0.3132 18 6 4.2540 -1.5000 1.5854 19 7 4.9563 -0.9639 2.5595 20 14 3.7243 -3.2882 1.6904 21 1 4.2918 -4.0407 0.5429 22 1 4.2186 -3.8770 2.9609 23 1 2.2421 -3.3686 1.6507 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 -0.8900 27 1 1.8934 -0.5138 0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 0.9795 1.7255 1.7933 30 1 2.7443 1.5678 1.9634 31 1 1.9337 3.9338 2.2323 32 1 3.0868 3.7383 0.8906 33 1 1.3452 3.8832 0.5532 34 1 3.1216 -0.2115 -1.8619 35 1 2.7554 1.3727 -2.5862 36 1 4.8867 0.4625 -3.4678 37 1 5.1651 1.9535 -2.5360 38 1 5.8279 -1.8763 -2.2720 39 1 5.6908 -1.7313 -0.5032 40 1 4.2859 -1.3762 -1.5369 41 1 6.4383 0.2386 0.5129 42 1 6.0711 1.8225 -0.2113 43 1 5.1989 -1.4968 3.3327 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259826870.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 15:11:02 Heat of formation + Delta-G solvation = 6.789135 kcal Electronic energy + Delta-G solvation = -19735.708618 eV Core-core repulsion = 17202.040765 eV Total energy + Delta-G solvation = -2533.667854 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 239.194 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.46790 -35.82372 -32.63403 -31.26981 -30.45831 -29.41197 -27.25215 -26.30679 -24.25970 -22.35242 -21.41594 -20.73344 -18.99193 -17.55240 -16.04761 -15.44336 -14.80064 -14.51836 -14.08819 -13.63421 -13.36025 -13.05034 -12.72263 -12.19230 -12.06615 -11.70556 -11.55984 -11.40882 -11.26687 -11.13986 -10.83069 -10.70422 -10.63270 -10.56175 -10.38018 -10.17257 -9.86749 -9.75950 -9.68143 -9.19200 -9.07528 -9.00025 -8.56429 -8.15979 -7.01608 -5.99192 -3.86065 3.28915 3.34882 3.38271 4.43154 4.91325 5.32533 5.62794 5.72278 5.74899 5.87634 5.95845 6.03913 6.09809 6.24848 6.26367 6.33600 6.36987 6.47815 6.49491 6.52781 6.58709 6.61128 6.64074 6.73848 6.79377 6.85562 6.91409 6.98710 7.03169 7.11223 7.13608 7.25669 7.37189 7.45068 7.68698 7.72124 7.86569 7.98908 8.17828 8.24182 8.45421 9.01643 9.59819 11.10696 Molecular weight = 239.19amu Principal moments of inertia in cm(-1) A = 0.017362 B = 0.013763 C = 0.010570 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1612.353847 B = 2033.987063 C = 2648.334618 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.044 3.956 3 N -0.526 5.526 4 C 0.044 3.956 5 C -0.141 4.141 6 C 0.090 3.910 7 H 0.052 0.948 8 C -0.109 4.109 9 C -0.106 4.106 10 C -0.077 4.077 11 H 0.039 0.961 12 C -0.131 4.131 13 C -0.094 4.094 14 C 0.012 3.988 15 H 0.050 0.950 16 C -0.489 4.489 17 H 0.071 0.929 18 C 0.058 3.942 19 N -0.892 5.892 20 Si 0.869 3.131 21 H -0.276 1.276 22 H -0.291 1.291 23 H -0.276 1.276 24 H 0.042 0.958 25 H 0.043 0.957 26 H 0.045 0.955 27 H 0.077 0.923 28 H 0.072 0.928 29 H 0.055 0.945 30 H 0.057 0.943 31 H 0.045 0.955 32 H 0.049 0.951 33 H 0.051 0.949 34 H 0.076 0.924 35 H 0.043 0.957 36 H 0.045 0.955 37 H 0.046 0.954 38 H 0.005 0.995 39 H 0.070 0.930 40 H 0.072 0.928 41 H 0.057 0.943 42 H 0.018 0.982 43 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.385 3.439 -5.118 7.034 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.084 4.084 3 N -0.249 5.249 4 C -0.084 4.084 5 C -0.199 4.199 6 C -0.018 4.018 7 H 0.070 0.930 8 C -0.146 4.146 9 C -0.144 4.144 10 C -0.096 4.096 11 H 0.057 0.943 12 C -0.187 4.187 13 C -0.133 4.133 14 C -0.007 4.007 15 H 0.068 0.932 16 C -0.527 4.527 17 H 0.088 0.912 18 C -0.142 4.142 19 N -0.531 5.531 20 Si 0.697 3.303 21 H -0.201 1.201 22 H -0.216 1.216 23 H -0.202 1.202 24 H 0.061 0.939 25 H 0.062 0.938 26 H 0.065 0.935 27 H 0.095 0.905 28 H 0.090 0.910 29 H 0.074 0.926 30 H 0.076 0.924 31 H 0.064 0.936 32 H 0.068 0.932 33 H 0.070 0.930 34 H 0.094 0.906 35 H 0.062 0.938 36 H 0.064 0.936 37 H 0.065 0.935 38 H 0.024 0.976 39 H 0.089 0.911 40 H 0.091 0.909 41 H 0.076 0.924 42 H 0.036 0.964 43 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -3.627 3.670 -5.238 7.352 hybrid contribution 0.397 -1.492 0.723 1.705 sum -3.230 2.178 -4.515 5.963 Atomic orbital electron populations 1.21930 0.98405 0.99690 1.00721 1.22647 0.91832 0.90206 1.03697 1.62439 1.22058 1.18754 1.21676 1.22058 1.00949 0.93955 0.91463 1.21724 1.01394 0.96559 1.00200 1.21691 0.88299 0.97511 0.94341 0.92999 1.21646 0.95360 1.01650 0.95927 1.21479 0.96118 0.99060 0.97708 1.20914 0.96086 0.96426 0.96147 0.94294 1.22264 1.02243 0.94434 0.99768 1.21536 1.00900 0.96130 0.94734 1.19395 0.90331 0.95751 0.95229 0.93223 1.21367 1.32319 0.95374 1.03651 0.91168 1.24834 0.95896 0.97333 0.96149 1.69912 1.38616 1.35983 1.08626 0.87012 0.79170 0.86727 0.77383 1.20117 1.21636 1.20197 0.93876 0.93778 0.93540 0.90458 0.90989 0.92611 0.92444 0.93584 0.93185 0.92991 0.90577 0.93795 0.93593 0.93525 0.97633 0.91130 0.90921 0.92376 0.96359 0.93212 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.52 10.06 37.16 0.37 -2.14 16 2 C 0.04 0.85 3.70 -3.82 -0.01 0.84 16 3 N -0.53 -10.13 4.41 -226.64 -1.00 -11.13 16 4 C 0.04 0.83 5.32 -3.83 -0.02 0.81 16 5 C -0.14 -2.29 9.83 37.15 0.37 -1.93 16 6 C 0.09 1.78 2.09 -67.71 -0.14 1.64 16 7 H 0.05 1.04 6.81 -51.92 -0.35 0.68 16 8 C -0.11 -2.00 4.60 -26.73 -0.12 -2.12 16 9 C -0.11 -1.85 5.45 -26.73 -0.15 -1.99 16 10 C -0.08 -1.50 3.19 -90.62 -0.29 -1.79 16 11 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 12 C -0.13 -2.67 7.72 37.16 0.29 -2.38 16 13 C -0.09 -2.05 5.07 -26.71 -0.14 -2.19 16 14 C 0.01 0.28 1.70 -91.74 -0.16 0.12 16 15 H 0.05 1.28 5.67 -51.93 -0.29 0.99 16 16 C -0.49 -11.45 1.40 -34.44 -0.05 -11.50 16 17 H 0.07 1.63 2.90 -52.49 -0.15 1.48 16 18 C 0.06 1.48 4.75 -17.82 -0.08 1.40 16 19 N -0.89 -24.32 12.97 55.43 0.72 -23.60 16 20 Si 0.87 20.22 29.54 -169.99 -5.02 15.19 16 21 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 22 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 23 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 24 H 0.04 0.71 6.93 -51.93 -0.36 0.34 16 25 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 26 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 27 H 0.08 1.74 5.71 -51.93 -0.30 1.45 16 28 H 0.07 1.43 4.25 -51.93 -0.22 1.21 16 29 H 0.06 1.01 6.74 -51.93 -0.35 0.66 16 30 H 0.06 1.27 5.76 -51.93 -0.30 0.97 16 31 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.05 0.84 6.98 -51.93 -0.36 0.47 16 33 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 34 H 0.08 1.48 3.22 -51.93 -0.17 1.31 16 35 H 0.04 0.77 8.14 -51.93 -0.42 0.34 16 36 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 37 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 38 H 0.00 0.09 8.14 -51.93 -0.42 -0.33 16 39 H 0.07 1.63 6.23 -51.93 -0.32 1.31 16 40 H 0.07 1.51 3.55 -51.93 -0.18 1.33 16 41 H 0.06 1.42 8.11 -51.93 -0.42 1.00 16 42 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 43 H 0.26 6.92 8.31 -40.82 -0.34 6.58 16 LS Contribution 295.74 15.07 4.46 4.46 Total: -1.00 -24.76 295.74 -8.12 -32.89 By element: Atomic # 1 Polarization: 10.58 SS G_CDS: -7.15 Total: 3.43 kcal Atomic # 6 Polarization: -21.11 SS G_CDS: -0.13 Total: -21.24 kcal Atomic # 7 Polarization: -34.45 SS G_CDS: -0.28 Total: -34.73 kcal Atomic # 14 Polarization: 20.22 SS G_CDS: -5.02 Total: 15.19 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -24.76 -8.12 -32.89 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259826870.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.679 kcal (2) G-P(sol) polarization free energy of solvation -24.765 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.914 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.125 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.890 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.789 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds