Wall clock time and date at job start Thu Apr 9 2020 15:11:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46908 * 109.47156 * 2 1 4 4 C 1.46901 * 110.99967 * 78.72371 * 3 2 1 5 5 C 1.52994 * 109.47005 * 195.34131 * 4 3 2 6 6 C 1.46901 * 110.99659 * 202.67987 * 3 2 1 7 7 H 1.09007 * 109.46287 * 175.62843 * 6 3 2 8 8 C 1.52997 * 109.47487 * 55.63085 * 6 3 2 9 9 C 1.52997 * 109.47002 * 179.97438 * 8 6 3 10 10 C 1.53000 * 109.47290 * 59.99722 * 9 8 6 11 11 H 1.09006 * 109.47089 * 180.02562 * 10 9 8 12 12 C 1.53001 * 109.47310 * 60.00136 * 10 9 8 13 13 C 1.52998 * 109.47139 * 299.99740 * 10 9 8 14 14 C 1.52999 * 109.47143 * 295.62043 * 6 3 2 15 15 H 1.09000 * 109.47567 * 300.00902 * 14 6 3 16 16 C 1.50701 * 109.46717 * 60.00657 * 14 6 3 17 17 H 1.07997 * 120.00218 * 24.00665 * 16 14 6 18 18 C 1.37881 * 119.99934 * 204.00448 * 16 14 6 19 19 N 1.31509 * 119.99961 * 0.02562 * 18 16 14 20 20 Si 1.86795 * 119.99872 * 180.02562 * 18 16 14 21 21 H 1.48499 * 109.47198 * 60.00253 * 20 18 16 22 22 H 1.48497 * 109.47041 * 179.97438 * 20 18 16 23 23 H 1.48493 * 109.47441 * 300.00066 * 20 18 16 24 24 H 1.08999 * 109.47033 * 300.00182 * 1 2 3 25 25 H 1.09002 * 109.46910 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.47094 * 60.00279 * 1 2 3 27 27 H 1.09004 * 109.47513 * 119.99794 * 2 1 3 28 28 H 1.08998 * 109.47223 * 240.00333 * 2 1 3 29 29 H 1.09003 * 109.47074 * 315.33892 * 4 3 2 30 30 H 1.08995 * 109.47052 * 75.33747 * 4 3 2 31 31 H 1.08996 * 109.47532 * 174.54722 * 5 4 3 32 32 H 1.08998 * 109.46968 * 294.55033 * 5 4 3 33 33 H 1.09000 * 109.47336 * 54.54739 * 5 4 3 34 34 H 1.09005 * 109.46645 * 299.99244 * 8 6 3 35 35 H 1.08998 * 109.47508 * 59.99416 * 8 6 3 36 36 H 1.09000 * 109.47140 * 179.97438 * 9 8 6 37 37 H 1.08995 * 109.46838 * 299.99302 * 9 8 6 38 38 H 1.08999 * 109.47111 * 86.82478 * 12 10 9 39 39 H 1.09004 * 109.46862 * 206.82570 * 12 10 9 40 40 H 1.08995 * 109.46517 * 326.82167 * 12 10 9 41 41 H 1.08998 * 109.47321 * 180.02562 * 13 10 9 42 42 H 1.09005 * 109.47017 * 300.00505 * 13 10 9 43 43 H 0.96999 * 120.00594 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3851 0.0000 4 6 1.9423 1.9708 1.3450 5 6 2.0874 3.4908 1.2484 6 6 3.3882 1.4595 -0.5288 7 1 3.6976 2.5029 -0.5903 8 6 3.4310 0.8319 -1.9235 9 6 4.8562 0.9101 -2.4744 10 6 5.8048 0.1512 -1.5443 11 1 6.8203 0.2073 -1.9366 12 6 5.3712 -1.3135 -1.4579 13 6 5.7621 0.7789 -0.1497 14 6 4.3364 0.7004 0.4015 15 1 4.3059 1.1476 1.3951 16 6 3.9086 -0.7421 0.4865 17 1 3.3316 -1.1823 -0.3132 18 6 4.2540 -1.5000 1.5854 19 7 4.9563 -0.9639 2.5595 20 14 3.7243 -3.2882 1.6904 21 1 4.2918 -4.0407 0.5429 22 1 4.2186 -3.8770 2.9609 23 1 2.2421 -3.3686 1.6507 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 -0.8900 27 1 1.8934 -0.5138 0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 0.9795 1.7255 1.7933 30 1 2.7443 1.5678 1.9634 31 1 1.9337 3.9338 2.2323 32 1 3.0868 3.7383 0.8906 33 1 1.3452 3.8832 0.5532 34 1 3.1216 -0.2115 -1.8619 35 1 2.7554 1.3727 -2.5862 36 1 4.8867 0.4625 -3.4678 37 1 5.1651 1.9535 -2.5360 38 1 5.8279 -1.8763 -2.2720 39 1 5.6908 -1.7313 -0.5032 40 1 4.2859 -1.3762 -1.5369 41 1 6.4383 0.2386 0.5129 42 1 6.0711 1.8225 -0.2113 43 1 5.1989 -1.4968 3.3327 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259826870.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 15:11:02 Heat of formation + Delta-G solvation = -6.149389 kcal Electronic energy + Delta-G solvation = -19736.269675 eV Core-core repulsion = 17202.040765 eV Total energy + Delta-G solvation = -2534.228910 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 239.194 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.11610 -37.39370 -34.52193 -32.73979 -32.02189 -31.12059 -28.79299 -28.09127 -25.90052 -23.89010 -22.97074 -22.48043 -20.57303 -19.23743 -17.89468 -17.06679 -16.54204 -16.04692 -15.81850 -15.20077 -14.98772 -14.62559 -14.28847 -13.94083 -13.64397 -13.24842 -13.14375 -12.94761 -12.82700 -12.75160 -12.57458 -12.41449 -12.25869 -12.15695 -11.98407 -11.79822 -11.45874 -11.42607 -11.33135 -10.83895 -10.74130 -10.62714 -10.41331 -10.05707 -8.69302 -7.97634 -5.84161 1.39729 1.43287 1.45277 2.49649 3.29902 3.44157 4.11809 4.19322 4.24903 4.36015 4.47752 4.59319 4.69946 4.75145 4.78878 4.82082 4.88574 4.93610 4.98743 5.03199 5.04911 5.11425 5.18740 5.22427 5.27289 5.34903 5.37611 5.40324 5.43716 5.46536 5.53999 5.62540 5.69869 5.77442 5.84452 5.98708 6.05570 6.13328 6.47403 6.61850 6.61979 7.09406 7.62578 9.13041 Molecular weight = 239.19amu Principal moments of inertia in cm(-1) A = 0.017362 B = 0.013763 C = 0.010570 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1612.353847 B = 2033.987063 C = 2648.334618 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.045 3.955 3 N -0.517 5.517 4 C 0.046 3.954 5 C -0.131 4.131 6 C 0.094 3.906 7 H 0.055 0.945 8 C -0.104 4.104 9 C -0.099 4.099 10 C -0.076 4.076 11 H 0.053 0.947 12 C -0.126 4.126 13 C -0.091 4.091 14 C 0.013 3.987 15 H 0.010 0.990 16 C -0.456 4.456 17 H 0.078 0.922 18 C 0.010 3.990 19 N -0.932 5.932 20 Si 0.910 3.090 21 H -0.270 1.270 22 H -0.303 1.303 23 H -0.270 1.270 24 H 0.044 0.956 25 H 0.054 0.946 26 H 0.060 0.940 27 H 0.040 0.960 28 H 0.071 0.929 29 H 0.063 0.937 30 H 0.017 0.983 31 H 0.061 0.939 32 H 0.041 0.959 33 H 0.066 0.934 34 H 0.066 0.934 35 H 0.063 0.937 36 H 0.071 0.929 37 H 0.059 0.941 38 H 0.028 0.972 39 H 0.035 0.965 40 H 0.068 0.932 41 H 0.020 0.980 42 H 0.026 0.974 43 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.684 4.079 -7.682 9.879 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.082 4.082 3 N -0.240 5.240 4 C -0.082 4.082 5 C -0.189 4.189 6 C -0.015 4.015 7 H 0.073 0.927 8 C -0.141 4.141 9 C -0.137 4.137 10 C -0.094 4.094 11 H 0.072 0.928 12 C -0.183 4.183 13 C -0.130 4.130 14 C -0.006 4.006 15 H 0.028 0.972 16 C -0.494 4.494 17 H 0.095 0.905 18 C -0.186 4.186 19 N -0.575 5.575 20 Si 0.738 3.262 21 H -0.195 1.195 22 H -0.230 1.230 23 H -0.195 1.195 24 H 0.063 0.937 25 H 0.073 0.927 26 H 0.079 0.921 27 H 0.059 0.941 28 H 0.089 0.911 29 H 0.081 0.919 30 H 0.035 0.965 31 H 0.080 0.920 32 H 0.060 0.940 33 H 0.085 0.915 34 H 0.085 0.915 35 H 0.082 0.918 36 H 0.090 0.910 37 H 0.078 0.922 38 H 0.047 0.953 39 H 0.054 0.946 40 H 0.087 0.913 41 H 0.039 0.961 42 H 0.045 0.955 43 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -4.943 4.302 -7.825 10.207 hybrid contribution 0.798 -1.654 1.517 2.382 sum -4.145 2.648 -6.308 7.999 Atomic orbital electron populations 1.21825 0.95828 1.00720 1.01485 1.22534 0.94018 0.89935 1.01754 1.62565 1.21452 1.18425 1.21575 1.22042 0.99738 0.95738 0.90712 1.21638 1.01328 0.94344 1.01590 1.21643 0.87786 0.97299 0.94769 0.92724 1.21611 0.96596 1.01024 0.94909 1.21443 0.94513 0.99701 0.98069 1.20904 0.97781 0.95789 0.94929 0.92809 1.22136 1.02051 0.95327 0.98788 1.21443 0.99384 0.96355 0.95818 1.19337 0.91762 0.95348 0.94179 0.97228 1.21545 1.29722 0.95542 1.02599 0.90467 1.25350 0.96775 0.99922 0.96519 1.70055 1.41270 1.36779 1.09349 0.86328 0.79057 0.83996 0.76772 1.19487 1.22972 1.19495 0.93712 0.92705 0.92090 0.94146 0.91092 0.91902 0.96500 0.92001 0.94002 0.91491 0.91541 0.91846 0.91030 0.92208 0.95287 0.94576 0.91319 0.96144 0.95515 0.94191 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.39 10.06 71.98 0.72 -3.67 16 2 C 0.05 1.71 3.70 86.30 0.32 2.03 16 3 N -0.52 -19.23 4.41 -870.97 -3.84 -23.07 16 4 C 0.05 1.73 5.32 86.30 0.46 2.19 16 5 C -0.13 -4.08 9.83 71.98 0.71 -3.37 16 6 C 0.09 3.58 2.09 44.91 0.09 3.68 16 7 H 0.05 2.09 6.81 -2.38 -0.02 2.07 16 8 C -0.10 -3.51 4.60 30.59 0.14 -3.37 16 9 C -0.10 -3.10 5.45 30.59 0.17 -2.94 16 10 C -0.08 -2.80 3.19 -10.79 -0.03 -2.83 16 11 H 0.05 1.85 8.14 -2.38 -0.02 1.83 16 12 C -0.13 -4.98 7.72 71.98 0.56 -4.42 16 13 C -0.09 -4.01 5.07 30.61 0.16 -3.85 16 14 C 0.01 0.62 1.70 -11.52 -0.02 0.60 16 15 H 0.01 0.52 5.67 -2.39 -0.01 0.51 16 16 C -0.46 -21.69 1.40 25.60 0.04 -21.65 16 17 H 0.08 3.55 2.90 -2.91 -0.01 3.54 16 18 C 0.01 0.53 4.75 84.66 0.40 0.93 16 19 N -0.93 -53.59 12.97 21.45 0.28 -53.31 16 20 Si 0.91 42.40 29.54 68.60 2.03 44.43 16 21 H -0.27 -12.17 7.11 99.48 0.71 -11.47 16 22 H -0.30 -14.67 7.11 99.48 0.71 -13.96 16 23 H -0.27 -12.13 7.11 99.48 0.71 -11.43 16 24 H 0.04 1.37 6.93 -2.39 -0.02 1.35 16 25 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 26 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 27 H 0.04 1.83 5.71 -2.38 -0.01 1.82 16 28 H 0.07 2.69 4.25 -2.39 -0.01 2.68 16 29 H 0.06 2.24 6.74 -2.39 -0.02 2.22 16 30 H 0.02 0.78 5.76 -2.39 -0.01 0.76 16 31 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 32 H 0.04 1.35 6.98 -2.39 -0.02 1.33 16 33 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 34 H 0.07 2.39 3.22 -2.38 -0.01 2.38 16 35 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 36 H 0.07 1.93 8.14 -2.39 -0.02 1.92 16 37 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 38 H 0.03 0.99 8.14 -2.39 -0.02 0.97 16 39 H 0.04 1.66 6.23 -2.39 -0.01 1.64 16 40 H 0.07 2.73 3.55 -2.39 -0.01 2.72 16 41 H 0.02 1.02 8.11 -2.39 -0.02 1.00 16 42 H 0.03 1.09 8.14 -2.38 -0.02 1.07 16 43 H 0.25 14.17 8.31 -92.71 -0.77 13.40 16 Total: -1.00 -54.93 295.74 3.15 -51.78 By element: Atomic # 1 Polarization: 15.86 SS G_CDS: 0.98 Total: 16.84 kcal Atomic # 6 Polarization: -40.37 SS G_CDS: 3.71 Total: -36.66 kcal Atomic # 7 Polarization: -72.82 SS G_CDS: -3.56 Total: -76.38 kcal Atomic # 14 Polarization: 42.40 SS G_CDS: 2.03 Total: 44.43 kcal Total: -54.93 3.15 -51.78 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259826870.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.629 kcal (2) G-P(sol) polarization free energy of solvation -54.932 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.303 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.154 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.778 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.149 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds