Wall clock time and date at job start Thu Apr 9 2020 15:11:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46900 * 109.47053 * 2 1 4 4 C 1.46908 * 111.00064 * 160.59017 * 3 2 1 5 5 C 1.52999 * 109.47209 * 288.34704 * 4 3 2 6 6 C 1.46905 * 110.99897 * 284.54485 * 3 2 1 7 7 H 1.08998 * 109.47025 * 54.99967 * 6 3 2 8 8 C 1.53002 * 109.46758 * 294.99913 * 6 3 2 9 9 C 1.53000 * 109.46596 * 179.97438 * 8 6 3 10 10 C 1.53007 * 109.47200 * 60.00355 * 9 8 6 11 11 H 1.08996 * 109.47016 * 179.97438 * 10 9 8 12 12 C 1.52996 * 109.47045 * 59.99797 * 10 9 8 13 13 C 1.52998 * 109.46825 * 299.99990 * 10 9 8 14 14 C 1.52995 * 109.47687 * 59.99855 * 13 10 9 15 15 H 1.08999 * 109.46969 * 59.99425 * 14 13 10 16 16 C 1.50696 * 109.47457 * 179.97438 * 14 13 10 17 17 H 1.08000 * 119.99862 * 119.99919 * 16 14 13 18 18 C 1.37879 * 120.00045 * 300.00110 * 16 14 13 19 19 N 1.31514 * 119.99838 * 0.02562 * 18 16 14 20 20 Si 1.86798 * 119.99899 * 179.97438 * 18 16 14 21 21 H 1.48498 * 109.47473 * 359.97438 * 20 18 16 22 22 H 1.48502 * 109.47296 * 120.00193 * 20 18 16 23 23 H 1.48504 * 109.46988 * 239.99856 * 20 18 16 24 24 H 1.08997 * 109.46822 * 306.15505 * 1 2 3 25 25 H 1.09001 * 109.46781 * 66.14981 * 1 2 3 26 26 H 1.08991 * 109.46777 * 186.15338 * 1 2 3 27 27 H 1.08997 * 109.47675 * 239.99841 * 2 1 3 28 28 H 1.09001 * 109.46941 * 119.99300 * 2 1 3 29 29 H 1.08995 * 109.46899 * 48.35403 * 4 3 2 30 30 H 1.09004 * 109.46676 * 168.34630 * 4 3 2 31 31 H 1.08995 * 109.46812 * 180.49731 * 5 4 3 32 32 H 1.09003 * 109.47320 * 300.50347 * 5 4 3 33 33 H 1.09003 * 109.46535 * 60.50129 * 5 4 3 34 34 H 1.08998 * 109.47397 * 299.99826 * 8 6 3 35 35 H 1.08996 * 109.46773 * 60.00187 * 8 6 3 36 36 H 1.08998 * 109.47227 * 300.00079 * 9 8 6 37 37 H 1.09000 * 109.47111 * 179.97438 * 9 8 6 38 38 H 1.09005 * 109.46986 * 299.99723 * 12 10 9 39 39 H 1.09001 * 109.47580 * 59.99701 * 12 10 9 40 40 H 1.09001 * 109.47077 * 180.02562 * 12 10 9 41 41 H 1.09008 * 109.46604 * 299.99543 * 13 10 9 42 42 H 1.09000 * 109.47016 * 180.02562 * 13 10 9 43 43 H 0.97002 * 119.99884 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 3.4147 1.4502 0.4558 5 6 3.4735 1.1737 1.9594 6 6 1.8704 1.9961 -1.3275 7 1 0.8318 1.9177 -1.6489 8 6 2.7703 1.2681 -2.3281 9 6 2.6143 1.9042 -3.7109 10 6 3.0165 3.3789 -3.6422 11 1 2.9059 3.8319 -4.6273 12 6 4.4744 3.4894 -3.1914 13 6 2.1168 4.1068 -2.6415 14 6 2.2726 3.4708 -1.2588 15 1 3.3112 3.5494 -0.9377 16 6 1.3868 4.1881 -0.2730 17 1 0.6138 3.6466 0.2520 18 6 1.5631 5.5359 -0.0415 19 7 2.5040 6.1954 -0.6813 20 14 0.4646 6.4252 1.1799 21 1 -0.5090 5.4657 1.7601 22 1 1.2974 7.0033 2.2650 23 1 -0.2683 7.5139 0.4849 24 1 -0.3633 0.6063 0.8297 25 1 -0.3633 0.4155 -0.9399 26 1 -0.3632 -1.0217 0.1101 27 1 1.8935 -0.5138 -0.8899 28 1 1.8933 -0.5137 0.8901 29 1 4.0054 0.7033 -0.0745 30 1 3.8172 2.4427 0.2528 31 1 4.5076 1.2308 2.2992 32 1 2.8755 1.9154 2.4889 33 1 3.0792 0.1777 2.1613 34 1 3.8089 1.3465 -2.0068 35 1 2.4835 0.2177 -2.3773 36 1 1.5757 1.8255 -4.0320 37 1 3.2557 1.3860 -4.4237 38 1 4.5855 3.0363 -2.2063 39 1 5.1155 2.9708 -3.9043 40 1 4.7608 4.5400 -3.1421 41 1 1.0781 4.0280 -2.9627 42 1 2.4030 5.1574 -2.5929 43 1 2.6283 7.1435 -0.5181 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259826871.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 15:11:04 Heat of formation + Delta-G solvation = -17.334405 kcal Electronic energy + Delta-G solvation = -19213.712895 eV Core-core repulsion = 16678.998966 eV Total energy + Delta-G solvation = -2534.713929 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 239.194 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.20144 -36.03852 -32.88822 -31.31218 -30.65218 -29.40229 -27.53498 -25.36003 -24.45317 -22.59427 -22.14064 -20.68265 -19.07675 -17.37227 -16.32424 -15.39777 -14.73223 -14.45601 -13.98741 -13.94844 -13.67636 -13.35953 -12.84802 -12.21836 -12.15512 -12.03075 -11.75457 -11.57040 -11.45140 -11.14821 -10.95062 -10.88906 -10.75655 -10.52557 -10.47575 -10.29392 -10.05280 -9.94863 -9.78354 -9.66236 -9.19402 -8.82272 -8.51211 -8.10099 -7.29511 -5.81311 -3.81882 3.39381 3.47762 3.53475 4.58679 4.66986 5.38736 5.48230 5.52370 5.59459 5.66477 5.70004 5.76078 5.89560 5.98137 6.02553 6.09311 6.13407 6.18011 6.21144 6.26010 6.40497 6.42617 6.45796 6.52716 6.55734 6.67737 6.69679 6.80991 6.81306 6.86261 6.93623 7.09894 7.13256 7.25272 7.52286 7.88835 7.94652 8.02715 8.19532 8.33912 8.68628 9.22907 9.79910 11.24718 Molecular weight = 239.19amu Principal moments of inertia in cm(-1) A = 0.016523 B = 0.011815 C = 0.008614 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1694.157019 B = 2369.345330 C = 3249.737981 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.042 3.958 3 N -0.511 5.511 4 C 0.051 3.949 5 C -0.143 4.143 6 C 0.095 3.905 7 H 0.067 0.933 8 C -0.153 4.153 9 C -0.103 4.103 10 C -0.095 4.095 11 H 0.047 0.953 12 C -0.138 4.138 13 C -0.106 4.106 14 C 0.059 3.941 15 H 0.033 0.967 16 C -0.479 4.479 17 H 0.061 0.939 18 C 0.054 3.946 19 N -0.898 5.898 20 Si 0.884 3.116 21 H -0.274 1.274 22 H -0.289 1.289 23 H -0.289 1.289 24 H 0.062 0.938 25 H 0.051 0.949 26 H 0.044 0.956 27 H 0.028 0.972 28 H 0.062 0.938 29 H 0.016 0.984 30 H 0.089 0.911 31 H 0.047 0.953 32 H 0.064 0.936 33 H 0.042 0.958 34 H 0.060 0.940 35 H 0.043 0.957 36 H 0.052 0.948 37 H 0.043 0.957 38 H 0.059 0.941 39 H 0.031 0.969 40 H 0.053 0.947 41 H 0.031 0.969 42 H 0.094 0.906 43 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.345 -9.640 -1.832 9.905 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.086 4.086 3 N -0.233 5.233 4 C -0.077 4.077 5 C -0.201 4.201 6 C -0.013 4.013 7 H 0.085 0.915 8 C -0.192 4.192 9 C -0.141 4.141 10 C -0.113 4.113 11 H 0.066 0.934 12 C -0.195 4.195 13 C -0.145 4.145 14 C 0.040 3.960 15 H 0.051 0.949 16 C -0.518 4.518 17 H 0.080 0.920 18 C -0.145 4.145 19 N -0.539 5.539 20 Si 0.713 3.287 21 H -0.199 1.199 22 H -0.215 1.215 23 H -0.216 1.216 24 H 0.081 0.919 25 H 0.070 0.930 26 H 0.063 0.937 27 H 0.046 0.954 28 H 0.080 0.920 29 H 0.034 0.966 30 H 0.107 0.893 31 H 0.066 0.934 32 H 0.084 0.916 33 H 0.061 0.939 34 H 0.078 0.922 35 H 0.062 0.938 36 H 0.071 0.929 37 H 0.061 0.939 38 H 0.078 0.922 39 H 0.050 0.950 40 H 0.072 0.928 41 H 0.050 0.950 42 H 0.113 0.887 43 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 1.114 -9.201 -1.479 9.386 hybrid contribution -0.088 0.056 0.030 0.108 sum 1.026 -9.146 -1.449 9.317 Atomic orbital electron populations 1.21712 0.95664 1.00037 1.02557 1.22143 0.95888 0.91027 0.99589 1.62179 1.19315 1.14869 1.26964 1.22061 0.89355 1.01640 0.94643 1.21762 1.00429 1.01042 0.96818 1.21917 0.97818 0.96994 0.84530 0.91504 1.22297 1.01289 0.98480 0.97117 1.21445 1.00079 0.96537 0.96087 1.21211 0.96285 0.94743 0.99080 0.93415 1.21809 0.95737 1.01344 1.00600 1.21674 0.95762 1.02543 0.94475 1.18762 0.97233 0.87188 0.92779 0.94903 1.21216 1.16330 0.92871 1.21361 0.92047 1.24936 0.95535 0.97754 0.96235 1.69887 1.32824 1.08569 1.42614 0.86658 0.80890 0.79647 0.81493 1.19912 1.21513 1.21591 0.91883 0.92966 0.93656 0.95439 0.91950 0.96583 0.89254 0.93431 0.91645 0.93853 0.92166 0.93792 0.92912 0.93871 0.92233 0.95015 0.92809 0.95019 0.88739 0.93576 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.15 9.92 37.16 0.37 -1.78 16 2 C 0.04 0.67 5.43 -3.82 -0.02 0.65 16 3 N -0.51 -9.71 3.91 -226.64 -0.89 -10.60 16 4 C 0.05 0.92 4.60 -3.82 -0.02 0.90 16 5 C -0.14 -2.29 9.97 37.16 0.37 -1.92 16 6 C 0.10 1.92 1.53 -67.71 -0.10 1.81 16 7 H 0.07 1.42 6.84 -51.93 -0.36 1.07 16 8 C -0.15 -2.69 4.30 -26.73 -0.12 -2.80 16 9 C -0.10 -1.77 5.45 -26.73 -0.15 -1.91 16 10 C -0.09 -1.80 3.20 -90.62 -0.29 -2.09 16 11 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 12 C -0.14 -2.54 8.50 37.16 0.32 -2.22 16 13 C -0.11 -2.43 4.51 -26.73 -0.12 -2.55 16 14 C 0.06 1.38 1.07 -91.77 -0.10 1.28 16 15 H 0.03 0.84 4.42 -51.93 -0.23 0.61 16 16 C -0.48 -12.78 8.19 -34.44 -0.28 -13.06 16 17 H 0.06 1.69 7.67 -52.49 -0.40 1.29 16 18 C 0.05 1.49 5.30 -17.82 -0.09 1.39 16 19 N -0.90 -25.26 11.32 55.43 0.63 -24.63 16 20 Si 0.88 21.65 29.54 -169.99 -5.02 16.63 16 21 H -0.27 -6.71 7.11 56.52 0.40 -6.30 16 22 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 23 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 24 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 25 H 0.05 0.82 7.06 -51.93 -0.37 0.46 16 26 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 27 H 0.03 0.43 5.89 -51.93 -0.31 0.12 16 28 H 0.06 0.93 6.23 -51.93 -0.32 0.60 16 29 H 0.02 0.27 7.13 -51.93 -0.37 -0.10 16 30 H 0.09 1.86 5.69 -51.93 -0.30 1.57 16 31 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 33 H 0.04 0.63 6.53 -51.93 -0.34 0.29 16 34 H 0.06 1.08 5.04 -51.93 -0.26 0.82 16 35 H 0.04 0.72 6.25 -51.93 -0.32 0.40 16 36 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 37 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.06 1.15 4.81 -51.93 -0.25 0.90 16 39 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 40 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 41 H 0.03 0.73 8.14 -51.92 -0.42 0.31 16 42 H 0.09 2.45 6.07 -51.93 -0.32 2.14 16 43 H 0.25 6.94 8.31 -40.82 -0.34 6.60 16 LS Contribution 307.39 15.07 4.63 4.63 Total: -1.00 -26.94 307.39 -8.38 -35.32 By element: Atomic # 1 Polarization: 8.44 SS G_CDS: -7.50 Total: 0.94 kcal Atomic # 6 Polarization: -22.06 SS G_CDS: -0.23 Total: -22.30 kcal Atomic # 7 Polarization: -34.97 SS G_CDS: -0.26 Total: -35.23 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.63 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -26.94 -8.38 -35.32 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259826871.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.987 kcal (2) G-P(sol) polarization free energy of solvation -26.941 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.954 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.380 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.322 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.334 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds