Wall clock time and date at job start Thu Apr 9 2020 15:11:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46900 * 109.47053 * 2 1 4 4 C 1.46908 * 111.00064 * 160.59017 * 3 2 1 5 5 C 1.52999 * 109.47209 * 288.34704 * 4 3 2 6 6 C 1.46905 * 110.99897 * 284.54485 * 3 2 1 7 7 H 1.08998 * 109.47025 * 54.99967 * 6 3 2 8 8 C 1.53002 * 109.46758 * 294.99913 * 6 3 2 9 9 C 1.53000 * 109.46596 * 179.97438 * 8 6 3 10 10 C 1.53007 * 109.47200 * 60.00355 * 9 8 6 11 11 H 1.08996 * 109.47016 * 179.97438 * 10 9 8 12 12 C 1.52996 * 109.47045 * 59.99797 * 10 9 8 13 13 C 1.52998 * 109.46825 * 299.99990 * 10 9 8 14 14 C 1.52995 * 109.47687 * 59.99855 * 13 10 9 15 15 H 1.08999 * 109.46969 * 59.99425 * 14 13 10 16 16 C 1.50696 * 109.47457 * 179.97438 * 14 13 10 17 17 H 1.08000 * 119.99862 * 119.99919 * 16 14 13 18 18 C 1.37879 * 120.00045 * 300.00110 * 16 14 13 19 19 N 1.31514 * 119.99838 * 0.02562 * 18 16 14 20 20 Si 1.86798 * 119.99899 * 179.97438 * 18 16 14 21 21 H 1.48498 * 109.47473 * 359.97438 * 20 18 16 22 22 H 1.48502 * 109.47296 * 120.00193 * 20 18 16 23 23 H 1.48504 * 109.46988 * 239.99856 * 20 18 16 24 24 H 1.08997 * 109.46822 * 306.15505 * 1 2 3 25 25 H 1.09001 * 109.46781 * 66.14981 * 1 2 3 26 26 H 1.08991 * 109.46777 * 186.15338 * 1 2 3 27 27 H 1.08997 * 109.47675 * 239.99841 * 2 1 3 28 28 H 1.09001 * 109.46941 * 119.99300 * 2 1 3 29 29 H 1.08995 * 109.46899 * 48.35403 * 4 3 2 30 30 H 1.09004 * 109.46676 * 168.34630 * 4 3 2 31 31 H 1.08995 * 109.46812 * 180.49731 * 5 4 3 32 32 H 1.09003 * 109.47320 * 300.50347 * 5 4 3 33 33 H 1.09003 * 109.46535 * 60.50129 * 5 4 3 34 34 H 1.08998 * 109.47397 * 299.99826 * 8 6 3 35 35 H 1.08996 * 109.46773 * 60.00187 * 8 6 3 36 36 H 1.08998 * 109.47227 * 300.00079 * 9 8 6 37 37 H 1.09000 * 109.47111 * 179.97438 * 9 8 6 38 38 H 1.09005 * 109.46986 * 299.99723 * 12 10 9 39 39 H 1.09001 * 109.47580 * 59.99701 * 12 10 9 40 40 H 1.09001 * 109.47077 * 180.02562 * 12 10 9 41 41 H 1.09008 * 109.46604 * 299.99543 * 13 10 9 42 42 H 1.09000 * 109.47016 * 180.02562 * 13 10 9 43 43 H 0.97002 * 119.99884 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 3.4147 1.4502 0.4558 5 6 3.4735 1.1737 1.9594 6 6 1.8704 1.9961 -1.3275 7 1 0.8318 1.9177 -1.6489 8 6 2.7703 1.2681 -2.3281 9 6 2.6143 1.9042 -3.7109 10 6 3.0165 3.3789 -3.6422 11 1 2.9059 3.8319 -4.6273 12 6 4.4744 3.4894 -3.1914 13 6 2.1168 4.1068 -2.6415 14 6 2.2726 3.4708 -1.2588 15 1 3.3112 3.5494 -0.9377 16 6 1.3868 4.1881 -0.2730 17 1 0.6138 3.6466 0.2520 18 6 1.5631 5.5359 -0.0415 19 7 2.5040 6.1954 -0.6813 20 14 0.4646 6.4252 1.1799 21 1 -0.5090 5.4657 1.7601 22 1 1.2974 7.0033 2.2650 23 1 -0.2683 7.5139 0.4849 24 1 -0.3633 0.6063 0.8297 25 1 -0.3633 0.4155 -0.9399 26 1 -0.3632 -1.0217 0.1101 27 1 1.8935 -0.5138 -0.8899 28 1 1.8933 -0.5137 0.8901 29 1 4.0054 0.7033 -0.0745 30 1 3.8172 2.4427 0.2528 31 1 4.5076 1.2308 2.2992 32 1 2.8755 1.9154 2.4889 33 1 3.0792 0.1777 2.1613 34 1 3.8089 1.3465 -2.0068 35 1 2.4835 0.2177 -2.3773 36 1 1.5757 1.8255 -4.0320 37 1 3.2557 1.3860 -4.4237 38 1 4.5855 3.0363 -2.2063 39 1 5.1155 2.9708 -3.9043 40 1 4.7608 4.5400 -3.1421 41 1 1.0781 4.0280 -2.9627 42 1 2.4030 5.1574 -2.5929 43 1 2.6283 7.1435 -0.5181 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259826871.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 15:11:04 Heat of formation + Delta-G solvation = -31.425826 kcal Electronic energy + Delta-G solvation = -19214.323945 eV Core-core repulsion = 16678.998966 eV Total energy + Delta-G solvation = -2535.324979 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 239.194 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.75564 -37.51881 -34.87561 -32.63836 -32.17162 -31.14715 -28.97907 -27.02998 -26.29191 -23.95065 -23.60589 -22.38291 -20.56745 -18.94996 -18.30583 -17.01663 -16.38623 -16.06122 -15.63300 -15.41250 -15.16965 -14.76480 -14.34530 -14.01877 -13.84625 -13.42894 -13.21413 -12.99741 -12.87813 -12.76602 -12.55586 -12.48192 -12.30956 -12.19956 -12.14456 -11.75381 -11.68266 -11.64523 -11.41633 -11.23672 -10.90536 -10.57820 -10.39461 -10.11665 -8.73328 -7.91998 -5.98109 1.40138 1.43808 1.54218 2.52848 3.23625 3.38869 3.99636 4.08322 4.21441 4.23893 4.33697 4.43556 4.53793 4.55022 4.65558 4.72614 4.75100 4.75776 4.89650 4.91463 4.94353 5.00800 5.08590 5.13831 5.16288 5.21780 5.26674 5.31156 5.35173 5.43958 5.45146 5.50747 5.55110 5.60930 5.77155 5.86598 6.14076 6.25526 6.56260 6.64029 6.72508 7.12282 7.65571 9.11345 Molecular weight = 239.19amu Principal moments of inertia in cm(-1) A = 0.016523 B = 0.011815 C = 0.008614 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1694.157019 B = 2369.345330 C = 3249.737981 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.043 3.957 3 N -0.534 5.534 4 C 0.054 3.946 5 C -0.136 4.136 6 C 0.104 3.896 7 H 0.052 0.948 8 C -0.144 4.144 9 C -0.099 4.099 10 C -0.092 4.092 11 H 0.059 0.941 12 C -0.131 4.131 13 C -0.101 4.101 14 C 0.063 3.937 15 H 0.011 0.989 16 C -0.485 4.485 17 H 0.046 0.954 18 C 0.009 3.991 19 N -0.920 5.920 20 Si 0.936 3.064 21 H -0.273 1.273 22 H -0.288 1.288 23 H -0.287 1.287 24 H 0.044 0.956 25 H 0.040 0.960 26 H 0.075 0.925 27 H 0.039 0.961 28 H 0.078 0.922 29 H 0.033 0.967 30 H 0.053 0.947 31 H 0.065 0.935 32 H 0.041 0.959 33 H 0.063 0.937 34 H 0.058 0.942 35 H 0.065 0.935 36 H 0.055 0.945 37 H 0.073 0.927 38 H 0.045 0.955 39 H 0.063 0.937 40 H 0.033 0.967 41 H 0.018 0.982 42 H 0.058 0.942 43 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.556 -11.943 -2.256 12.253 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.085 4.085 3 N -0.257 5.257 4 C -0.073 4.073 5 C -0.193 4.193 6 C -0.005 4.005 7 H 0.070 0.930 8 C -0.183 4.183 9 C -0.137 4.137 10 C -0.110 4.110 11 H 0.078 0.922 12 C -0.188 4.188 13 C -0.140 4.140 14 C 0.045 3.955 15 H 0.029 0.971 16 C -0.524 4.524 17 H 0.065 0.935 18 C -0.187 4.187 19 N -0.562 5.562 20 Si 0.764 3.236 21 H -0.198 1.198 22 H -0.214 1.214 23 H -0.214 1.214 24 H 0.063 0.937 25 H 0.059 0.941 26 H 0.094 0.906 27 H 0.057 0.943 28 H 0.096 0.904 29 H 0.052 0.948 30 H 0.071 0.929 31 H 0.084 0.916 32 H 0.060 0.940 33 H 0.082 0.918 34 H 0.077 0.923 35 H 0.083 0.917 36 H 0.074 0.926 37 H 0.091 0.909 38 H 0.064 0.936 39 H 0.082 0.918 40 H 0.052 0.948 41 H 0.037 0.963 42 H 0.077 0.923 43 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 1.320 -11.512 -1.899 11.742 hybrid contribution -0.169 0.774 0.187 0.814 sum 1.151 -10.738 -1.712 10.934 Atomic orbital electron populations 1.21687 0.95236 1.01483 1.01166 1.22220 0.96199 0.89243 1.00830 1.62109 1.20030 1.17109 1.26454 1.21978 0.89065 1.00095 0.96199 1.21702 1.01319 1.01343 0.94983 1.21622 0.97396 0.95215 0.86237 0.93003 1.22191 1.00405 0.99238 0.96476 1.21418 1.00961 0.94828 0.96462 1.21153 0.95619 0.96062 0.98199 0.92225 1.21728 0.95932 1.00398 1.00758 1.21500 0.95834 1.01038 0.95646 1.18631 0.95209 0.89579 0.92111 0.97072 1.21467 1.16152 0.93125 1.21681 0.93537 1.25540 0.96765 0.98618 0.97813 1.70017 1.33998 1.08497 1.43688 0.85840 0.79452 0.78559 0.79734 1.19812 1.21403 1.21390 0.93672 0.94103 0.90610 0.94268 0.90401 0.94842 0.92858 0.91646 0.94015 0.91802 0.92337 0.91660 0.92585 0.90851 0.93586 0.91784 0.94762 0.96332 0.92349 0.93851 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.92 9.92 71.98 0.71 -3.21 16 2 C 0.04 1.26 5.43 86.30 0.47 1.72 16 3 N -0.53 -19.88 3.91 -870.94 -3.40 -23.28 16 4 C 0.05 1.93 4.60 86.30 0.40 2.32 16 5 C -0.14 -4.16 9.97 71.98 0.72 -3.45 16 6 C 0.10 4.12 1.53 44.92 0.07 4.19 16 7 H 0.05 2.20 6.84 -2.39 -0.02 2.19 16 8 C -0.14 -4.73 4.30 30.60 0.13 -4.60 16 9 C -0.10 -3.10 5.45 30.60 0.17 -2.93 16 10 C -0.09 -3.40 3.20 -10.79 -0.03 -3.43 16 11 H 0.06 2.06 8.14 -2.39 -0.02 2.04 16 12 C -0.13 -4.71 8.50 71.98 0.61 -4.10 16 13 C -0.10 -4.76 4.51 30.59 0.14 -4.62 16 14 C 0.06 3.04 1.07 -11.54 -0.01 3.02 16 15 H 0.01 0.60 4.42 -2.39 -0.01 0.59 16 16 C -0.49 -26.73 8.19 25.60 0.21 -26.52 16 17 H 0.05 2.64 7.67 -2.91 -0.02 2.62 16 18 C 0.01 0.51 5.30 84.66 0.45 0.96 16 19 N -0.92 -53.58 11.32 21.45 0.24 -53.33 16 20 Si 0.94 45.53 29.54 68.60 2.03 47.55 16 21 H -0.27 -13.13 7.11 99.48 0.71 -12.42 16 22 H -0.29 -13.86 7.11 99.48 0.71 -13.16 16 23 H -0.29 -13.81 7.11 99.48 0.71 -13.11 16 24 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 25 H 0.04 1.23 7.06 -2.39 -0.02 1.21 16 26 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 27 H 0.04 1.08 5.89 -2.39 -0.01 1.07 16 28 H 0.08 2.06 6.23 -2.39 -0.01 2.04 16 29 H 0.03 1.06 7.13 -2.39 -0.02 1.04 16 30 H 0.05 2.27 5.69 -2.39 -0.01 2.26 16 31 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 32 H 0.04 1.45 8.14 -2.39 -0.02 1.44 16 33 H 0.06 1.68 6.53 -2.39 -0.02 1.66 16 34 H 0.06 1.96 5.04 -2.39 -0.01 1.95 16 35 H 0.06 1.89 6.25 -2.39 -0.01 1.88 16 36 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 37 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 38 H 0.05 1.77 4.81 -2.38 -0.01 1.76 16 39 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 40 H 0.03 1.33 8.14 -2.39 -0.02 1.31 16 41 H 0.02 0.87 8.14 -2.38 -0.02 0.85 16 42 H 0.06 3.15 6.07 -2.39 -0.01 3.14 16 43 H 0.25 14.21 8.31 -92.71 -0.77 13.44 16 Total: -1.00 -59.50 307.39 3.85 -55.64 By element: Atomic # 1 Polarization: 13.09 SS G_CDS: 0.96 Total: 14.05 kcal Atomic # 6 Polarization: -44.65 SS G_CDS: 4.03 Total: -40.63 kcal Atomic # 7 Polarization: -73.46 SS G_CDS: -3.16 Total: -76.62 kcal Atomic # 14 Polarization: 45.53 SS G_CDS: 2.03 Total: 47.55 kcal Total: -59.50 3.85 -55.64 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259826871.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.217 kcal (2) G-P(sol) polarization free energy of solvation -59.497 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.281 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.855 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.643 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.426 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds