Wall clock time and date at job start Thu Apr 9 2020 15:11:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38162 * 119.97893 * 2 1 4 4 C 1.38700 * 119.95914 * 180.02562 * 3 2 1 5 5 O 1.35925 * 120.04241 * 179.97438 * 4 3 2 6 6 C 1.38740 * 119.91216 * 359.97438 * 4 3 2 7 7 C 1.50705 * 120.02015 * 179.97438 * 6 4 3 8 8 H 1.09005 * 109.47217 * 0.02562 * 7 6 4 9 9 C 1.52998 * 109.47515 * 240.00211 * 7 6 4 10 10 C 1.50701 * 109.47104 * 120.00219 * 7 6 4 11 11 H 1.08000 * 119.99633 * 359.97438 * 10 7 6 12 12 C 1.37875 * 120.00001 * 180.02562 * 10 7 6 13 13 N 1.31516 * 120.00067 * 359.97438 * 12 10 7 14 14 Si 1.86804 * 119.99943 * 179.97438 * 12 10 7 15 15 H 1.48508 * 109.46921 * 89.99694 * 14 12 10 16 16 H 1.48494 * 109.47348 * 209.99545 * 14 12 10 17 17 H 1.48493 * 109.47075 * 329.99986 * 14 12 10 18 18 C 1.38122 * 119.95973 * 359.70706 * 6 4 3 19 19 C 1.38348 * 119.97855 * 179.97438 * 2 1 3 20 20 Cl 1.73599 * 119.95593 * 359.97438 * 19 2 1 21 21 H 1.09003 * 109.47208 * 270.02349 * 1 2 3 22 22 H 1.09006 * 109.47303 * 30.01922 * 1 2 3 23 23 H 1.08998 * 109.47401 * 150.02213 * 1 2 3 24 24 H 1.08006 * 120.02240 * 0.02562 * 3 2 1 25 25 H 0.96701 * 113.99765 * 90.00299 * 5 4 3 26 26 H 1.08997 * 109.47564 * 180.02562 * 9 7 6 27 27 H 1.09005 * 109.46949 * 300.00251 * 9 7 6 28 28 H 1.09006 * 109.47088 * 59.99478 * 9 7 6 29 29 H 0.97002 * 119.99562 * 180.02562 * 13 12 10 30 30 H 1.08003 * 119.98071 * 180.29535 * 18 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1973 1.1968 0.0000 4 6 3.5843 1.1963 -0.0005 5 8 4.2652 2.3727 -0.0011 6 6 4.2758 -0.0065 -0.0005 7 6 5.7828 -0.0099 -0.0017 8 1 6.1485 1.0170 -0.0020 9 6 6.2903 -0.7328 -1.2510 10 6 6.2845 -0.7209 1.2287 11 1 5.5823 -1.1291 1.9405 12 6 7.6399 -0.8494 1.4461 13 7 8.4950 -0.3518 0.5796 14 14 8.2618 -1.7301 2.9716 15 1 8.4238 -3.1766 2.6766 16 1 9.5713 -1.1575 3.3746 17 1 7.2847 -1.5566 4.0762 18 6 3.5821 -1.2009 0.0061 19 6 2.1983 -1.1984 0.0005 20 17 1.3286 -2.7008 0.0019 21 1 -0.3634 0.0004 1.0277 22 1 -0.3634 0.8898 -0.5142 23 1 -0.3634 -0.8901 -0.5135 24 1 1.6573 2.1321 0.0004 25 1 4.4626 2.7132 0.8822 26 1 7.3803 -0.7356 -1.2516 27 1 5.9247 -1.7597 -1.2503 28 1 5.9274 -0.2185 -2.1410 29 1 9.4486 -0.4426 0.7324 30 1 4.1200 -2.1374 0.0109 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259826982.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 15:11:05 Heat of formation + Delta-G solvation = -62.130615 kcal Electronic energy + Delta-G solvation = -14963.243393 eV Core-core repulsion = 12362.078173 eV Total energy + Delta-G solvation = -2601.165219 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 240.066 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.96453 -38.13593 -37.02043 -36.42748 -33.87661 -31.50515 -30.56851 -27.45490 -27.13356 -23.92835 -23.18769 -21.37854 -18.80448 -18.39137 -17.35306 -17.03186 -16.34428 -16.06985 -14.95464 -14.79458 -14.60942 -14.39004 -13.79026 -13.49115 -13.24795 -13.17061 -12.89248 -12.84032 -12.60581 -12.39411 -12.15137 -12.01425 -11.84434 -11.76649 -10.99338 -10.97180 -10.47170 -9.63484 -9.17672 -8.10475 -6.25127 0.17629 0.39866 1.20342 1.40754 1.42388 1.51807 2.40824 2.61643 3.17000 3.40563 3.89572 3.93728 4.27438 4.44368 4.69216 4.73056 4.81006 4.84903 4.93124 5.07608 5.19952 5.22558 5.35971 5.42322 5.47556 5.60027 5.82517 5.97983 6.03369 6.32155 6.83652 6.89457 7.43028 8.93909 Molecular weight = 240.07amu Principal moments of inertia in cm(-1) A = 0.025607 B = 0.007910 C = 0.006811 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1093.189928 B = 3539.117362 C = 4110.092433 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.081 4.081 3 C -0.131 4.131 4 C 0.093 3.907 5 O -0.504 6.504 6 C -0.082 4.082 7 C 0.076 3.924 8 H 0.020 0.980 9 C -0.123 4.123 10 C -0.522 4.522 11 H 0.051 0.949 12 C 0.017 3.983 13 N -0.915 5.915 14 Si 0.952 3.048 15 H -0.277 1.277 16 H -0.282 1.282 17 H -0.269 1.269 18 C -0.096 4.096 19 C -0.053 4.053 20 Cl -0.067 7.067 21 H 0.085 0.915 22 H 0.088 0.912 23 H 0.073 0.927 24 H 0.160 0.840 25 H 0.403 0.597 26 H 0.062 0.938 27 H 0.030 0.970 28 H 0.019 0.981 29 H 0.262 0.738 30 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.391 0.982 0.158 14.425 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.082 4.082 3 C -0.150 4.150 4 C 0.048 3.952 5 O -0.316 6.316 6 C -0.083 4.083 7 C 0.058 3.942 8 H 0.038 0.962 9 C -0.180 4.180 10 C -0.560 4.560 11 H 0.069 0.931 12 C -0.182 4.182 13 N -0.555 5.555 14 Si 0.778 3.222 15 H -0.202 1.202 16 H -0.208 1.208 17 H -0.193 1.193 18 C -0.115 4.115 19 C -0.079 4.079 20 Cl -0.039 7.039 21 H 0.103 0.897 22 H 0.107 0.893 23 H 0.092 0.908 24 H 0.178 0.822 25 H 0.261 0.739 26 H 0.080 0.920 27 H 0.049 0.951 28 H 0.038 0.962 29 H 0.071 0.929 30 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -14.313 0.816 -0.475 14.344 hybrid contribution 1.035 -0.593 1.149 1.656 sum -13.278 0.222 0.674 13.297 Atomic orbital electron populations 1.20864 0.87734 1.04216 1.03720 1.19830 0.98140 0.90028 1.00157 1.21358 0.92133 0.98880 1.02581 1.18603 0.90426 0.85057 1.01102 1.84715 1.76632 1.35391 1.34847 1.20740 0.98001 0.92363 0.97154 1.17617 0.85984 0.96405 0.94213 0.96210 1.21643 1.02616 0.97917 0.95861 1.21365 0.91738 1.36480 1.06419 0.93051 1.25685 0.97122 0.96218 0.99176 1.70017 1.02265 1.46420 1.36775 0.85644 0.77717 0.78765 0.80094 1.20237 1.20791 1.19346 1.20749 0.91919 0.98486 1.00327 1.20869 0.91660 0.87357 1.08023 1.98310 1.76246 1.32262 1.97039 0.89671 0.89313 0.90823 0.82216 0.73927 0.91959 0.95122 0.96206 0.92870 0.86183 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.16 9.61 71.24 0.68 -1.47 16 2 C -0.08 -2.29 5.88 -19.86 -0.12 -2.41 16 3 C -0.13 -3.88 9.64 22.36 0.22 -3.66 16 4 C 0.09 3.45 6.68 22.50 0.15 3.60 16 5 O -0.50 -17.98 12.27 -92.70 -1.14 -19.12 16 6 C -0.08 -3.52 4.75 -19.77 -0.09 -3.62 16 7 C 0.08 3.87 2.44 -12.28 -0.03 3.84 16 8 H 0.02 1.09 6.99 -2.38 -0.02 1.08 16 9 C -0.12 -6.15 8.79 71.98 0.63 -5.52 16 10 C -0.52 -28.31 8.24 25.60 0.21 -28.10 16 11 H 0.05 2.77 7.59 -2.91 -0.02 2.75 16 12 C 0.02 0.92 5.30 84.65 0.45 1.37 16 13 N -0.92 -52.38 11.32 21.45 0.24 -52.14 16 14 Si 0.95 43.15 29.54 68.60 2.03 45.18 16 15 H -0.28 -12.32 7.11 99.48 0.71 -11.61 16 16 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 17 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 18 C -0.10 -3.82 8.48 22.28 0.19 -3.63 16 19 C -0.05 -1.74 6.31 22.33 0.14 -1.60 16 20 Cl -0.07 -1.91 27.29 -2.72 -0.07 -1.99 16 21 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 22 H 0.09 1.38 8.09 -2.38 -0.02 1.37 16 23 H 0.07 1.43 6.90 -2.39 -0.02 1.42 16 24 H 0.16 3.63 8.06 -2.91 -0.02 3.61 16 25 H 0.40 11.18 9.06 -74.06 -0.67 10.51 16 26 H 0.06 3.41 6.07 -2.39 -0.01 3.40 16 27 H 0.03 1.45 7.41 -2.38 -0.02 1.44 16 28 H 0.02 0.90 8.14 -2.38 -0.02 0.88 16 29 H 0.26 14.26 8.31 -92.71 -0.77 13.49 16 30 H 0.12 5.04 7.59 -2.91 -0.02 5.02 16 Total: -1.00 -61.43 270.20 3.98 -57.45 By element: Atomic # 1 Polarization: 11.32 SS G_CDS: 0.49 Total: 11.81 kcal Atomic # 6 Polarization: -43.63 SS G_CDS: 2.43 Total: -41.20 kcal Atomic # 7 Polarization: -52.38 SS G_CDS: 0.24 Total: -52.14 kcal Atomic # 8 Polarization: -17.98 SS G_CDS: -1.14 Total: -19.12 kcal Atomic # 14 Polarization: 43.15 SS G_CDS: 2.03 Total: 45.18 kcal Atomic # 17 Polarization: -1.91 SS G_CDS: -0.07 Total: -1.99 kcal Total: -61.43 3.98 -57.45 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259826982.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.680 kcal (2) G-P(sol) polarization free energy of solvation -61.428 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.108 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.977 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.451 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.131 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds