Wall clock time and date at job start Thu Apr 9 2020 15:11:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38159 * 119.97628 * 2 1 4 4 C 1.38706 * 119.95606 * 179.97438 * 3 2 1 5 5 O 1.35923 * 120.04363 * 179.97438 * 4 3 2 6 6 C 1.38735 * 119.91395 * 0.02562 * 4 3 2 7 7 C 1.50706 * 120.02095 * 179.97438 * 6 4 3 8 8 H 1.08997 * 109.47135 * 0.02562 * 7 6 4 9 9 C 1.53005 * 109.46755 * 120.00489 * 7 6 4 10 10 C 1.50696 * 109.47266 * 240.00457 * 7 6 4 11 11 H 1.08004 * 120.00277 * 354.69658 * 10 7 6 12 12 C 1.37878 * 119.99937 * 174.70167 * 10 7 6 13 13 N 1.31509 * 119.99944 * 353.04426 * 12 10 7 14 14 Si 1.86800 * 119.99987 * 173.05057 * 12 10 7 15 15 H 1.48506 * 109.46971 * 265.61488 * 14 12 10 16 16 H 1.48500 * 109.47144 * 145.61786 * 14 12 10 17 17 H 1.48495 * 109.47044 * 25.61666 * 14 12 10 18 18 C 1.38126 * 119.95774 * 0.25745 * 6 4 3 19 19 C 1.38340 * 119.97795 * 179.97438 * 2 1 3 20 20 Cl 1.73602 * 119.96165 * 0.02562 * 19 2 1 21 21 H 1.08992 * 109.47552 * 89.99513 * 1 2 3 22 22 H 1.09000 * 109.46606 * 209.99412 * 1 2 3 23 23 H 1.08997 * 109.46741 * 329.99203 * 1 2 3 24 24 H 1.08007 * 120.02428 * 0.02562 * 3 2 1 25 25 H 0.96701 * 113.99717 * 270.02452 * 5 4 3 26 26 H 1.08999 * 109.47030 * 305.37026 * 9 7 6 27 27 H 1.08998 * 109.47195 * 65.37163 * 9 7 6 28 28 H 1.09000 * 109.46810 * 185.36878 * 9 7 6 29 29 H 0.97005 * 120.00493 * 180.02562 * 13 12 10 30 30 H 1.08001 * 119.97656 * 179.74400 * 18 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1974 1.1968 0.0000 4 6 3.5844 1.1963 0.0005 5 8 4.2653 2.3727 0.0000 6 6 4.2759 -0.0065 0.0005 7 6 5.7829 -0.0098 0.0005 8 1 6.1485 1.0170 0.0010 9 6 6.2912 -0.7323 1.2498 10 6 6.2837 -0.7212 -1.2299 11 1 5.5846 -1.2043 -1.8966 12 6 7.6344 -0.7555 -1.5047 13 7 8.4724 -0.0550 -0.7722 14 14 8.2740 -1.7968 -2.9175 15 1 8.6922 -3.1257 -2.4031 16 1 9.4379 -1.1200 -3.5440 17 1 7.2005 -1.9727 -3.9283 18 6 3.5822 -1.2009 -0.0054 19 6 2.1983 -1.1983 0.0005 20 17 1.3287 -2.7008 0.0005 21 1 -0.3634 0.0001 -1.0276 22 1 -0.3632 -0.8901 0.5138 23 1 -0.3633 0.8899 0.5140 24 1 1.6573 2.1322 0.0004 25 1 4.4624 2.7126 -0.8836 26 1 5.8525 -0.2761 2.1372 27 1 6.0062 -1.7834 1.2029 28 1 7.3772 -0.6522 1.2992 29 1 9.4226 -0.0788 -0.9657 30 1 4.1201 -2.1374 -0.0096 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259826985.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 15:11:07 Heat of formation + Delta-G solvation = -63.665545 kcal Electronic energy + Delta-G solvation = -14957.320416 eV Core-core repulsion = 12356.088637 eV Total energy + Delta-G solvation = -2601.231779 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 240.066 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.95959 -38.13062 -37.01081 -36.39781 -33.88164 -31.56073 -30.56428 -27.46669 -27.11093 -23.92680 -23.20112 -21.38563 -18.79806 -18.39902 -17.34646 -17.01656 -16.32084 -16.06473 -14.95225 -14.78480 -14.59007 -14.38595 -13.80530 -13.54488 -13.29783 -13.16737 -12.95572 -12.80851 -12.60784 -12.39603 -12.21838 -11.99571 -11.84034 -11.73459 -11.02949 -10.92553 -10.47913 -9.63446 -9.17769 -8.13586 -6.24187 0.18023 0.40191 1.20627 1.39969 1.42327 1.51574 2.40812 2.61906 3.16838 3.41418 3.89903 3.93945 4.26540 4.44735 4.68646 4.73358 4.80383 4.85036 4.90938 5.06365 5.15304 5.21790 5.36017 5.42399 5.47404 5.59358 5.81929 5.92822 5.98487 6.31190 6.85134 6.89591 7.42972 8.94018 Molecular weight = 240.07amu Principal moments of inertia in cm(-1) A = 0.025657 B = 0.007937 C = 0.006778 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1091.041532 B = 3526.769601 C = 4130.305406 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.081 4.081 3 C -0.131 4.131 4 C 0.093 3.907 5 O -0.504 6.504 6 C -0.081 4.081 7 C 0.075 3.925 8 H 0.024 0.976 9 C -0.116 4.116 10 C -0.523 4.523 11 H 0.052 0.948 12 C 0.019 3.981 13 N -0.917 5.917 14 Si 0.949 3.051 15 H -0.277 1.277 16 H -0.283 1.283 17 H -0.269 1.269 18 C -0.096 4.096 19 C -0.052 4.052 20 Cl -0.067 7.067 21 H 0.084 0.916 22 H 0.073 0.927 23 H 0.088 0.912 24 H 0.160 0.840 25 H 0.402 0.598 26 H 0.025 0.975 27 H 0.035 0.965 28 H 0.044 0.956 29 H 0.262 0.738 30 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.464 0.302 0.352 14.471 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.082 4.082 3 C -0.150 4.150 4 C 0.048 3.952 5 O -0.316 6.316 6 C -0.082 4.082 7 C 0.056 3.944 8 H 0.042 0.958 9 C -0.174 4.174 10 C -0.560 4.560 11 H 0.070 0.930 12 C -0.180 4.180 13 N -0.556 5.556 14 Si 0.775 3.225 15 H -0.202 1.202 16 H -0.209 1.209 17 H -0.193 1.193 18 C -0.115 4.115 19 C -0.079 4.079 20 Cl -0.038 7.038 21 H 0.103 0.897 22 H 0.092 0.908 23 H 0.107 0.893 24 H 0.177 0.823 25 H 0.260 0.740 26 H 0.044 0.956 27 H 0.054 0.946 28 H 0.063 0.937 29 H 0.071 0.929 30 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -14.389 0.158 0.973 14.423 hybrid contribution 1.083 -0.617 -1.135 1.686 sum -13.306 -0.459 -0.162 13.315 Atomic orbital electron populations 1.20863 0.87755 1.04214 1.03706 1.19826 0.98131 0.90041 1.00170 1.21357 0.92135 0.98880 1.02600 1.18612 0.90422 0.85083 1.01076 1.84712 1.76639 1.35444 1.34814 1.20733 0.97980 0.92358 0.97132 1.17623 0.85993 0.96744 0.94014 0.95812 1.21580 1.00777 0.98607 0.96406 1.21361 0.92135 1.34373 1.08180 0.93000 1.25670 0.97286 0.96295 0.98793 1.70069 1.03221 1.40797 1.41472 0.85678 0.78019 0.79077 0.79737 1.20232 1.20864 1.19298 1.20759 0.91914 0.98490 1.00358 1.20866 0.91684 0.87337 1.08004 1.98310 1.76266 1.32229 1.97039 0.89698 0.90799 0.89339 0.82276 0.73966 0.95635 0.94579 0.93741 0.92883 0.86035 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.15 9.61 71.24 0.68 -1.47 16 2 C -0.08 -2.29 5.88 -19.86 -0.12 -2.41 16 3 C -0.13 -3.89 9.64 22.36 0.22 -3.67 16 4 C 0.09 3.45 6.68 22.50 0.15 3.60 16 5 O -0.50 -18.19 12.27 -92.68 -1.14 -19.33 16 6 C -0.08 -3.48 4.76 -19.77 -0.09 -3.58 16 7 C 0.07 3.77 2.31 -12.28 -0.03 3.74 16 8 H 0.02 1.32 6.96 -2.39 -0.02 1.30 16 9 C -0.12 -5.69 8.70 71.98 0.63 -5.07 16 10 C -0.52 -28.28 8.19 25.60 0.21 -28.07 16 11 H 0.05 2.80 7.54 -2.91 -0.02 2.78 16 12 C 0.02 1.03 5.27 84.66 0.45 1.47 16 13 N -0.92 -52.72 12.06 21.45 0.26 -52.46 16 14 Si 0.95 43.20 29.54 68.60 2.03 45.22 16 15 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 16 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 17 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 18 C -0.10 -3.79 8.48 22.28 0.19 -3.60 16 19 C -0.05 -1.72 6.31 22.33 0.14 -1.58 16 20 Cl -0.07 -1.89 27.28 -2.72 -0.07 -1.97 16 21 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 22 H 0.07 1.43 6.90 -2.39 -0.02 1.41 16 23 H 0.09 1.38 8.08 -2.39 -0.02 1.36 16 24 H 0.16 3.64 8.06 -2.91 -0.02 3.62 16 25 H 0.40 11.48 9.06 -74.06 -0.67 10.80 16 26 H 0.02 1.13 8.14 -2.39 -0.02 1.11 16 27 H 0.04 1.68 7.60 -2.39 -0.02 1.66 16 28 H 0.04 2.36 6.92 -2.39 -0.02 2.35 16 29 H 0.26 14.33 8.31 -92.70 -0.77 13.56 16 30 H 0.12 5.00 7.65 -2.91 -0.02 4.98 16 Total: -1.00 -61.52 271.68 3.98 -57.53 By element: Atomic # 1 Polarization: 11.14 SS G_CDS: 0.49 Total: 11.63 kcal Atomic # 6 Polarization: -43.05 SS G_CDS: 2.42 Total: -40.63 kcal Atomic # 7 Polarization: -52.72 SS G_CDS: 0.26 Total: -52.46 kcal Atomic # 8 Polarization: -18.19 SS G_CDS: -1.14 Total: -19.33 kcal Atomic # 14 Polarization: 43.20 SS G_CDS: 2.03 Total: 45.22 kcal Atomic # 17 Polarization: -1.89 SS G_CDS: -0.07 Total: -1.97 kcal Total: -61.52 3.98 -57.53 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259826985.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.132 kcal (2) G-P(sol) polarization free energy of solvation -61.516 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.648 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.983 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.533 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.666 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds