Wall clock time and date at job start Thu Apr 9 2020 15:11:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30930 * 1 3 3 Si 1.86797 * 119.99975 * 2 1 4 4 H 1.48500 * 109.47197 * 271.30146 * 3 2 1 5 5 H 1.48495 * 109.47022 * 31.29879 * 3 2 1 6 6 H 1.48504 * 109.47256 * 151.30144 * 3 2 1 7 7 C 1.39873 * 119.99923 * 180.02562 * 2 1 3 8 8 H 1.07991 * 120.00064 * 341.07438 * 7 2 1 9 9 C 1.41028 * 119.99768 * 161.07652 * 7 2 1 10 10 C 1.40902 * 120.39747 * 331.52576 * 9 7 2 11 11 C 1.35939 * 120.00171 * 180.15361 * 10 9 7 12 12 C 1.39723 * 121.25013 * 0.30218 * 11 10 9 13 13 C 1.39633 * 119.36503 * 359.44236 * 12 11 10 14 14 Cl 1.73599 * 119.81581 * 180.35017 * 13 12 11 15 15 C 1.38011 * 120.36672 * 0.37485 * 13 12 11 16 16 O 1.35691 * 120.09389 * 180.33090 * 15 13 12 17 17 O 1.36049 * 111.06297 * 179.25475 * 12 11 10 18 18 C 1.43714 * 109.30637 * 19.26648 * 17 12 11 19 19 C 1.51749 * 131.85298 * 180.89581 * 11 10 9 20 20 H 0.96998 * 120.00315 * 359.97438 * 1 2 3 21 21 H 1.07994 * 119.99687 * 0.12969 * 10 9 7 22 22 H 0.96700 * 113.99772 * 274.86401 * 16 15 13 23 23 H 1.09006 * 110.72972 * 90.28183 * 18 17 12 24 24 H 1.08999 * 110.73579 * 213.40488 * 18 17 12 25 25 H 1.08999 * 110.93780 * 282.23510 * 19 11 10 26 26 H 1.09002 * 110.93910 * 45.91529 * 19 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3093 0.0000 0.0000 3 14 2.2433 1.6177 0.0000 4 1 2.4632 2.0623 -1.3997 5 1 1.4547 2.6445 0.7273 6 1 3.5544 1.4324 0.6723 7 6 2.0086 -1.2113 -0.0005 8 1 1.5125 -2.1214 0.3024 9 6 3.3618 -1.2441 -0.3967 10 6 3.8581 -0.3005 -1.3178 11 6 5.1630 -0.3414 -1.6964 12 6 6.0336 -1.3116 -1.1934 13 6 5.5567 -2.2498 -0.2757 14 17 6.6304 -3.4548 0.3637 15 6 4.2365 -2.2247 0.1255 16 8 3.7806 -3.1349 1.0227 17 8 7.2798 -1.1710 -1.7208 18 6 7.4231 0.1558 -2.2542 19 6 5.9724 0.5326 -2.6365 20 1 -0.4850 0.8400 0.0004 21 1 3.2016 0.4551 -1.7233 22 1 3.5061 -3.9735 0.6272 23 1 7.8114 0.8364 -1.4964 24 1 8.0677 0.1509 -3.1330 25 1 5.7660 0.2811 -3.6768 26 1 5.7816 1.5890 -2.4475 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259834729.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 15:11:08 Heat of formation + Delta-G solvation = -84.327844 kcal Electronic energy + Delta-G solvation = -14988.426149 eV Core-core repulsion = 12250.465291 eV Total energy + Delta-G solvation = -2737.960858 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 240.034 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -41.70898 -39.46987 -37.33686 -36.83219 -35.26776 -32.93575 -31.80494 -29.26595 -26.97350 -24.18825 -23.12567 -22.10800 -19.60022 -19.24280 -17.95970 -17.25029 -17.04382 -16.63604 -16.14318 -15.55707 -15.06297 -14.47010 -14.25538 -13.95131 -13.68612 -13.40565 -12.96833 -12.79512 -12.50154 -12.40262 -12.16062 -11.98082 -11.63442 -11.49470 -11.16954 -10.85402 -9.40394 -9.08720 -8.97643 -6.46301 0.34832 0.47523 1.21843 1.28903 1.37792 1.45566 2.05993 2.32061 2.54510 3.15046 3.62434 3.70969 3.93048 4.22813 4.30787 4.52716 4.67766 4.74492 4.94214 4.97397 5.16050 5.25096 5.36969 5.53143 5.76318 6.12891 6.29092 6.50197 6.65735 7.08364 8.09727 Molecular weight = 240.03amu Principal moments of inertia in cm(-1) A = 0.024172 B = 0.011542 C = 0.008254 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1158.103709 B = 2425.394747 C = 3391.624808 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.833 5.833 2 C 0.049 3.951 3 Si 0.958 3.042 4 H -0.242 1.242 5 H -0.273 1.273 6 H -0.261 1.261 7 C -0.453 4.453 8 H 0.066 0.934 9 C 0.050 3.950 10 C -0.193 4.193 11 C -0.122 4.122 12 C -0.012 4.012 13 C -0.037 4.037 14 Cl -0.075 7.075 15 C 0.014 3.986 16 O -0.482 6.482 17 O -0.318 6.318 18 C 0.051 3.949 19 C -0.107 4.107 20 H 0.298 0.702 21 H 0.119 0.881 22 H 0.380 0.620 23 H 0.078 0.922 24 H 0.135 0.865 25 H 0.105 0.895 26 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.735 3.076 -4.924 11.335 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.458 5.458 2 C -0.167 4.167 3 Si 0.781 3.219 4 H -0.167 1.167 5 H -0.199 1.199 6 H -0.185 1.185 7 C -0.481 4.481 8 H 0.085 0.915 9 C 0.046 3.954 10 C -0.212 4.212 11 C -0.123 4.123 12 C -0.057 4.057 13 C -0.065 4.065 14 Cl -0.046 7.046 15 C -0.033 4.033 16 O -0.291 6.291 17 O -0.234 6.234 18 C -0.024 4.024 19 C -0.144 4.144 20 H 0.109 0.891 21 H 0.137 0.863 22 H 0.235 0.765 23 H 0.096 0.904 24 H 0.153 0.847 25 H 0.124 0.876 26 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 9.838 3.337 -4.446 11.300 hybrid contribution -0.396 -0.174 0.011 0.433 sum 9.442 3.163 -4.435 10.901 Atomic orbital electron populations 1.69732 1.09039 1.31898 1.35151 1.26815 0.95383 1.04069 0.90465 0.85642 0.79251 0.76669 0.80358 1.16702 1.19937 1.18538 1.19160 0.93633 0.96247 1.39059 0.91539 1.17925 0.92786 0.92896 0.91743 1.20112 0.95078 1.03496 1.02538 1.20603 0.93812 0.98561 0.99354 1.18669 0.86227 1.00368 1.00472 1.20523 0.91211 0.95387 0.99374 1.98268 1.64652 1.55593 1.86088 1.17909 0.88678 0.98245 0.98439 1.84762 1.84557 1.26940 1.32846 1.86682 1.29078 1.33645 1.74003 1.24001 0.96873 0.81455 1.00050 1.21937 0.93114 1.00160 0.99211 0.89134 0.86300 0.76491 0.90380 0.84706 0.87632 0.87750 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -43.45 13.93 21.82 0.30 -43.14 15 2 C 0.05 2.52 5.40 85.22 0.46 2.98 15 3 Si 0.96 40.22 24.55 68.60 1.68 41.91 15 4 H -0.24 -9.14 6.48 99.48 0.64 -8.49 15 5 H -0.27 -10.75 7.11 99.48 0.71 -10.05 15 6 H -0.26 -11.55 7.03 99.48 0.70 -10.85 15 7 C -0.45 -24.48 9.20 23.35 0.21 -24.27 15 8 H 0.07 3.87 7.88 -2.92 -0.02 3.84 15 9 C 0.05 2.51 5.15 -21.17 -0.11 2.40 15 10 C -0.19 -8.69 7.23 22.39 0.16 -8.53 15 11 C -0.12 -4.86 6.21 -19.70 -0.12 -4.99 15 12 C -0.01 -0.50 6.84 22.97 0.16 -0.34 15 13 C -0.04 -1.64 6.35 22.55 0.14 -1.50 15 14 Cl -0.07 -2.87 28.45 -2.72 -0.08 -2.95 15 15 C 0.01 0.68 6.72 22.99 0.15 0.83 15 16 O -0.48 -21.52 12.26 -90.10 -1.10 -22.63 15 17 O -0.32 -11.51 11.07 -94.11 -1.04 -12.55 15 18 C 0.05 1.28 7.99 72.55 0.58 1.86 15 19 C -0.11 -2.97 7.12 30.75 0.22 -2.75 15 20 H 0.30 13.84 8.30 -92.71 -0.77 13.07 15 21 H 0.12 5.16 4.47 -2.91 -0.01 5.14 15 22 H 0.38 13.70 9.06 -74.06 -0.67 13.03 15 23 H 0.08 1.78 8.14 -2.38 -0.02 1.76 15 24 H 0.14 2.34 8.14 -2.39 -0.02 2.32 15 25 H 0.11 2.51 8.14 -2.39 -0.02 2.49 15 26 H 0.10 2.45 8.14 -2.39 -0.02 2.43 15 Total: -1.00 -61.07 241.36 2.12 -58.95 By element: Atomic # 1 Polarization: 14.22 SS G_CDS: 0.50 Total: 14.71 kcal Atomic # 6 Polarization: -36.16 SS G_CDS: 1.86 Total: -34.30 kcal Atomic # 7 Polarization: -43.45 SS G_CDS: 0.30 Total: -43.14 kcal Atomic # 8 Polarization: -33.03 SS G_CDS: -2.15 Total: -35.18 kcal Atomic # 14 Polarization: 40.22 SS G_CDS: 1.68 Total: 41.91 kcal Atomic # 17 Polarization: -2.87 SS G_CDS: -0.08 Total: -2.95 kcal Total: -61.07 2.12 -58.95 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259834729.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.375 kcal (2) G-P(sol) polarization free energy of solvation -61.073 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.448 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.120 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.953 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.328 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds