Wall clock time and date at job start Thu Apr 9 2020 15:11:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86797 * 120.00353 * 2 1 4 4 H 1.48506 * 109.47294 * 240.00246 * 3 2 1 5 5 H 1.48503 * 109.46954 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47431 * 119.99843 * 3 2 1 7 7 C 1.37880 * 119.99913 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00010 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99861 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47212 * 179.97438 * 9 7 2 11 11 C 1.50697 * 109.47466 * 179.97438 * 10 9 7 12 12 S 1.75069 * 124.59066 * 270.02829 * 11 10 9 13 13 C 1.75263 * 91.03345 * 180.11092 * 12 11 10 14 14 C 1.35129 * 110.05172 * 0.14015 * 13 12 11 15 15 C 1.36140 * 124.58665 * 89.72000 * 11 10 9 16 16 C 1.52231 * 132.05311 * 359.78094 * 15 11 10 17 17 C 1.53781 * 110.52587 * 158.56843 * 16 15 11 18 18 S 1.78594 * 136.87206 * 179.54137 * 14 13 12 19 19 H 0.97002 * 119.99768 * 359.97438 * 1 2 3 20 20 H 1.09002 * 109.47060 * 299.99817 * 9 7 2 21 21 H 1.09001 * 109.47380 * 59.99905 * 9 7 2 22 22 H 1.09002 * 109.47153 * 299.99998 * 10 9 7 23 23 H 1.08998 * 109.47533 * 59.99628 * 10 9 7 24 24 H 1.07998 * 124.96964 * 180.12089 * 13 12 11 25 25 H 1.08998 * 109.40129 * 38.18382 * 16 15 11 26 26 H 1.08999 * 109.09749 * 278.76453 * 16 15 11 27 27 H 1.08994 * 111.07997 * 271.29707 * 17 16 15 28 28 H 1.09001 * 111.11218 * 147.26291 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1029 1.6963 -1.2126 5 1 1.2842 2.7464 -0.0006 6 1 3.1030 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0005 10 6 2.2451 -3.6621 0.0005 11 6 1.4916 -4.9672 0.0012 12 16 0.9945 -5.8272 1.4428 13 6 0.2673 -7.0942 0.4746 14 6 0.4287 -6.8237 -0.8394 15 6 1.1001 -5.6341 -1.1193 16 6 1.2655 -5.3241 -2.6005 17 6 1.1300 -6.6066 -3.4382 18 16 0.0004 -7.5964 -2.3915 19 1 -0.4850 0.8401 0.0004 20 1 0.6239 -2.5567 0.8903 21 1 0.6246 -2.5571 -0.8897 22 1 2.8718 -3.6044 -0.8895 23 1 2.8718 -3.6044 0.8904 24 1 -0.2358 -7.9640 0.8704 25 1 2.2483 -4.8848 -2.7710 26 1 0.4972 -4.6129 -2.9040 27 1 2.0934 -7.1030 -3.5536 28 1 0.6812 -6.3959 -4.4089 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259840506.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 15:11:10 Heat of formation + Delta-G solvation = -2.083338 kcal Electronic energy + Delta-G solvation = -12496.020432 eV Core-core repulsion = 10342.255635 eV Total energy + Delta-G solvation = -2153.764797 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 240.034 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.50371 -35.92769 -33.78507 -33.60410 -29.63181 -26.89137 -25.09201 -23.97202 -22.77376 -19.33852 -18.62461 -17.93479 -17.62482 -16.56778 -16.23937 -15.56460 -14.82682 -14.48239 -14.30320 -13.94562 -13.85407 -13.55030 -13.14100 -12.85004 -12.78201 -12.65207 -12.49822 -11.98198 -11.74620 -11.59008 -11.28989 -11.13272 -10.56874 -10.15681 -9.34786 -8.34167 -8.20540 -6.33316 -0.06727 0.24105 0.69545 1.11110 1.40604 1.43521 1.44148 1.51624 1.57211 2.40603 3.12588 3.62687 3.83170 3.93352 4.10631 4.34885 4.42614 4.61577 4.67047 4.75677 4.84203 4.87737 5.02284 5.18095 5.32103 5.45984 5.65004 5.79973 6.18429 6.82638 7.36482 8.90683 Molecular weight = 240.03amu Principal moments of inertia in cm(-1) A = 0.033359 B = 0.006205 C = 0.005591 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 839.158462 B = 4511.173910 C = 5007.271133 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.003 3.997 3 Si 0.965 3.035 4 H -0.265 1.265 5 H -0.285 1.285 6 H -0.266 1.266 7 C -0.545 4.545 8 H 0.065 0.935 9 C 0.041 3.959 10 C -0.034 4.034 11 C -0.169 4.169 12 S 0.165 5.835 13 C -0.206 4.206 14 C -0.112 4.112 15 C -0.149 4.149 16 C -0.069 4.069 17 C -0.068 4.068 18 S -0.146 6.146 19 H 0.264 0.736 20 H -0.012 1.012 21 H -0.009 1.009 22 H 0.077 0.923 23 H 0.067 0.933 24 H 0.189 0.811 25 H 0.096 0.904 26 H 0.079 0.921 27 H 0.116 0.884 28 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.174 -13.964 -3.656 14.780 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.196 4.196 3 Si 0.789 3.211 4 H -0.189 1.189 5 H -0.210 1.210 6 H -0.191 1.191 7 C -0.582 4.582 8 H 0.084 0.916 9 C 0.003 3.997 10 C -0.073 4.073 11 C -0.288 4.288 12 S 0.431 5.569 13 C -0.349 4.349 14 C -0.236 4.236 15 C -0.163 4.163 16 C -0.109 4.109 17 C -0.216 4.216 18 S 0.090 5.910 19 H 0.073 0.927 20 H 0.007 0.993 21 H 0.009 0.991 22 H 0.096 0.904 23 H 0.086 0.914 24 H 0.206 0.794 25 H 0.114 0.886 26 H 0.098 0.902 27 H 0.135 0.865 28 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 2.367 -14.548 -2.464 14.944 hybrid contribution 0.588 1.729 -0.874 2.025 sum 2.956 -12.819 -3.338 13.573 Atomic orbital electron populations 1.70106 1.07918 1.27894 1.51324 1.25969 0.95685 1.03347 0.94554 0.85500 0.78257 0.77996 0.79304 1.18944 1.21033 1.19114 1.21623 0.93686 0.91903 1.51029 0.91649 1.18888 0.93838 0.92083 0.94858 1.20136 0.96840 0.88111 1.02232 1.24973 1.06312 1.01699 0.95798 1.83791 1.52424 1.13158 1.07552 1.25226 1.10385 1.05220 0.94104 1.21716 1.05814 0.99080 0.96967 1.20780 1.03555 0.95607 0.96373 1.20771 1.04530 0.98075 0.87560 1.24341 1.01972 0.94937 1.00338 1.85802 1.55390 1.51400 0.98370 0.92749 0.99321 0.99098 0.90449 0.91450 0.79402 0.88610 0.90250 0.86546 0.84286 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.73 13.29 21.45 0.28 -56.45 15 2 C 0.00 0.15 5.46 84.66 0.46 0.61 15 3 Si 0.97 43.60 29.54 68.60 2.03 45.63 15 4 H -0.26 -11.39 7.11 99.48 0.71 -10.68 15 5 H -0.28 -12.68 7.11 99.48 0.71 -11.97 15 6 H -0.27 -11.53 7.11 99.48 0.71 -10.83 15 7 C -0.54 -30.48 9.11 25.60 0.23 -30.25 15 8 H 0.07 3.45 7.74 -2.91 -0.02 3.43 15 9 C 0.04 2.17 4.95 29.85 0.15 2.31 15 10 C -0.03 -1.41 5.57 29.85 0.17 -1.24 15 11 C -0.17 -6.27 5.78 25.20 0.15 -6.13 15 12 S 0.17 5.24 23.25 -56.49 -1.31 3.93 15 13 C -0.21 -6.02 11.24 67.10 0.75 -5.26 15 14 C -0.11 -3.55 6.79 21.84 0.15 -3.40 15 15 C -0.15 -5.10 6.10 -19.57 -0.12 -5.22 15 16 C -0.07 -1.97 6.27 30.60 0.19 -1.78 15 17 C -0.07 -1.43 7.56 72.25 0.55 -0.88 15 18 S -0.15 -3.89 23.10 -56.49 -1.30 -5.20 15 19 H 0.26 15.11 8.31 -92.71 -0.77 14.34 15 20 H -0.01 -0.67 8.14 -2.39 -0.02 -0.69 15 21 H -0.01 -0.54 8.14 -2.39 -0.02 -0.56 15 22 H 0.08 3.02 7.99 -2.39 -0.02 3.00 15 23 H 0.07 2.67 8.14 -2.39 -0.02 2.65 15 24 H 0.19 4.34 8.06 -2.91 -0.02 4.31 15 25 H 0.10 2.54 7.99 -2.39 -0.02 2.52 15 26 H 0.08 2.45 8.14 -2.39 -0.02 2.43 15 27 H 0.12 2.00 8.14 -2.39 -0.02 1.98 15 28 H 0.14 2.20 8.14 -2.39 -0.02 2.18 15 Total: -1.00 -64.73 268.27 3.52 -61.21 By element: Atomic # 1 Polarization: 0.97 SS G_CDS: 1.15 Total: 2.12 kcal Atomic # 6 Polarization: -53.92 SS G_CDS: 2.68 Total: -51.24 kcal Atomic # 7 Polarization: -56.73 SS G_CDS: 0.28 Total: -56.45 kcal Atomic # 14 Polarization: 43.60 SS G_CDS: 2.03 Total: 45.63 kcal Atomic # 16 Polarization: 1.35 SS G_CDS: -2.62 Total: -1.27 kcal Total: -64.73 3.52 -61.21 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259840506.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.124 kcal (2) G-P(sol) polarization free energy of solvation -64.726 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.602 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.519 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.207 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.083 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds