Wall clock time and date at job start Thu Apr 9 2020 15:11:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38291 * 119.93890 * 2 1 4 4 C 1.38216 * 120.03896 * 179.97438 * 3 2 1 5 5 Cl 1.73602 * 120.03762 * 180.02562 * 4 3 2 6 6 C 1.38854 * 119.92412 * 0.05117 * 4 3 2 7 7 O 1.35930 * 120.05902 * 180.24640 * 6 4 3 8 8 C 1.38665 * 119.88177 * 359.97438 * 6 4 3 9 9 C 1.50695 * 120.01981 * 180.02562 * 8 6 4 10 10 C 1.53006 * 109.47200 * 279.99536 * 9 8 6 11 11 C 1.50704 * 109.47231 * 179.97438 * 10 9 8 12 12 H 1.08002 * 120.00005 * 0.02562 * 11 10 9 13 13 C 1.37877 * 120.00099 * 179.97438 * 11 10 9 14 14 N 1.31522 * 119.99702 * 0.02562 * 13 11 10 15 15 Si 1.86800 * 120.00215 * 180.02562 * 13 11 10 16 16 H 1.48502 * 109.47097 * 90.00291 * 15 13 11 17 17 H 1.48495 * 109.47177 * 210.00618 * 15 13 11 18 18 H 1.48502 * 109.47011 * 330.00474 * 15 13 11 19 19 C 1.38193 * 119.95698 * 0.02562 * 8 6 4 20 20 H 1.09002 * 109.47017 * 269.97845 * 1 2 3 21 21 H 1.09009 * 109.47124 * 29.97622 * 1 2 3 22 22 H 1.08994 * 109.47418 * 149.97308 * 1 2 3 23 23 H 1.08000 * 119.98440 * 0.02562 * 3 2 1 24 24 H 0.96694 * 114.00183 * 269.73017 * 7 6 4 25 25 H 1.08998 * 109.47312 * 39.99648 * 9 8 6 26 26 H 1.09007 * 109.47200 * 159.99945 * 9 8 6 27 27 H 1.08998 * 109.47079 * 300.00255 * 10 9 8 28 28 H 1.09009 * 109.46881 * 60.00628 * 10 9 8 29 29 H 0.96994 * 119.99527 * 179.97438 * 14 13 11 30 30 H 1.08002 * 119.96021 * 180.02562 * 19 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1971 1.1984 0.0000 4 6 3.5793 1.2008 0.0005 5 17 4.4457 2.7052 0.0012 6 6 4.2741 -0.0014 0.0000 7 8 5.6334 -0.0023 0.0056 8 6 3.5788 -1.2012 -0.0005 9 6 4.3297 -2.5077 -0.0005 10 6 4.8014 -2.8249 -1.4211 11 6 5.5529 -4.1312 -1.4210 12 1 5.6808 -4.6805 -0.4999 13 6 6.0762 -4.6256 -2.5969 14 7 5.9200 -3.9568 -3.7186 15 14 7.0070 -6.2451 -2.5969 16 1 6.0583 -7.3614 -2.8401 17 1 8.0340 -6.2258 -3.6693 18 1 7.6688 -6.4357 -1.2812 19 6 2.1969 -1.1979 -0.0011 20 1 -0.3633 -0.0004 1.0277 21 1 -0.3634 0.8903 -0.5135 22 1 -0.3634 -0.8897 -0.5142 23 1 1.6559 2.1329 0.0004 24 1 6.0303 -0.0042 -0.8761 25 1 5.1930 -2.4306 0.6603 26 1 3.6733 -3.3041 0.3505 27 1 3.9381 -2.9019 -2.0819 28 1 5.4579 -2.0286 -1.7722 29 1 6.2884 -4.3045 -4.5457 30 1 1.6553 -2.1323 -0.0011 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259842470.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 15:11:11 Heat of formation + Delta-G solvation = -70.004731 kcal Electronic energy + Delta-G solvation = -14580.581616 eV Core-core repulsion = 11979.074950 eV Total energy + Delta-G solvation = -2601.506667 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 240.066 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.03474 -37.89213 -37.54366 -35.96337 -34.06299 -32.36048 -30.77990 -27.38112 -26.91500 -23.87698 -23.01957 -21.40730 -19.23820 -18.53936 -17.40128 -16.82176 -16.53900 -16.22698 -15.07533 -14.78016 -14.57020 -14.46476 -14.17462 -13.52868 -13.49309 -13.29635 -12.96307 -12.81457 -12.73965 -12.43101 -12.13149 -12.01506 -11.76042 -11.52510 -11.46913 -11.09409 -10.55257 -9.63217 -9.34436 -8.20154 -6.31145 0.10370 0.22220 1.10813 1.40961 1.41781 1.53043 2.40509 2.49606 3.13096 3.25893 3.76891 3.87235 4.25642 4.30312 4.37629 4.60772 4.71647 4.83857 4.89583 4.91823 5.06061 5.13812 5.25456 5.35473 5.49147 5.52860 5.75361 5.78544 5.84174 6.22983 6.68526 6.84243 7.38065 8.91070 Molecular weight = 240.07amu Principal moments of inertia in cm(-1) A = 0.029148 B = 0.006048 C = 0.005334 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 960.392111 B = 4628.530598 C = 5248.218807 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.078 4.078 3 C -0.111 4.111 4 C -0.066 4.066 5 Cl -0.062 7.062 6 C 0.091 3.909 7 O -0.496 6.496 8 C -0.094 4.094 9 C -0.060 4.060 10 C 0.042 3.958 11 C -0.543 4.543 12 H 0.059 0.941 13 C 0.004 3.996 14 N -0.931 5.931 15 Si 0.962 3.038 16 H -0.271 1.271 17 H -0.282 1.282 18 H -0.265 1.265 19 C -0.111 4.111 20 H 0.088 0.912 21 H 0.084 0.916 22 H 0.075 0.925 23 H 0.160 0.840 24 H 0.398 0.602 25 H 0.059 0.941 26 H 0.068 0.932 27 H -0.009 1.009 28 H -0.005 1.005 29 H 0.264 0.736 30 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.560 10.231 7.063 15.683 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.079 4.079 3 C -0.129 4.129 4 C -0.093 4.093 5 Cl -0.033 7.033 6 C 0.045 3.955 7 O -0.308 6.308 8 C -0.095 4.095 9 C -0.098 4.098 10 C 0.005 3.995 11 C -0.581 4.581 12 H 0.077 0.923 13 C -0.194 4.194 14 N -0.571 5.571 15 Si 0.787 3.213 16 H -0.197 1.197 17 H -0.208 1.208 18 H -0.189 1.189 19 C -0.129 4.129 20 H 0.107 0.893 21 H 0.103 0.897 22 H 0.094 0.906 23 H 0.177 0.823 24 H 0.256 0.744 25 H 0.077 0.923 26 H 0.087 0.913 27 H 0.009 0.991 28 H 0.013 0.987 29 H 0.072 0.928 30 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -9.498 10.369 7.493 15.933 hybrid contribution 1.086 -0.676 -0.897 1.562 sum -8.412 9.693 6.596 14.430 Atomic orbital electron populations 1.20847 0.87635 1.04179 1.03783 1.20206 0.98263 0.91277 0.98136 1.21081 0.90538 0.99909 1.01378 1.21471 0.93578 0.86274 1.07972 1.98337 1.77294 1.30688 1.96975 1.18213 0.83773 0.90732 1.02788 1.84715 1.15362 1.96174 1.34520 1.20549 0.95009 0.94841 0.99077 1.20452 0.98467 0.92041 0.98822 1.18838 0.94420 0.95078 0.91169 1.21661 1.34929 1.07063 0.94422 0.92272 1.25916 0.97180 1.01175 0.95173 1.70088 1.46923 1.40538 0.99546 0.85485 0.78366 0.79373 0.78065 1.19692 1.20786 1.18930 1.21229 0.92300 0.99449 0.99969 0.89345 0.89726 0.90635 0.82267 0.74438 0.92252 0.91346 0.99058 0.98655 0.92772 0.84118 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.75 10.01 71.23 0.71 -1.04 16 2 C -0.08 -1.94 5.88 -19.85 -0.12 -2.06 16 3 C -0.11 -2.79 9.48 22.28 0.21 -2.58 16 4 C -0.07 -2.01 6.33 22.41 0.14 -1.87 16 5 Cl -0.06 -1.71 28.51 -2.72 -0.08 -1.78 16 6 C 0.09 3.23 6.67 22.52 0.15 3.38 16 7 O -0.50 -18.19 12.13 -92.76 -1.13 -19.32 16 8 C -0.09 -3.45 5.15 -19.77 -0.10 -3.56 16 9 C -0.06 -2.56 4.95 29.85 0.15 -2.41 16 10 C 0.04 2.19 4.95 29.85 0.15 2.33 16 11 C -0.54 -30.68 9.11 25.60 0.23 -30.45 16 12 H 0.06 3.23 7.74 -2.91 -0.02 3.20 16 13 C 0.00 0.20 5.46 84.65 0.46 0.66 16 14 N -0.93 -55.96 13.29 21.45 0.28 -55.68 16 15 Si 0.96 44.00 29.54 68.60 2.03 46.03 16 16 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 17 H -0.28 -12.64 7.11 99.48 0.71 -11.94 16 18 H -0.26 -11.66 7.11 99.48 0.71 -10.96 16 19 C -0.11 -3.39 9.32 22.26 0.21 -3.18 16 20 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 21 H 0.08 1.09 8.08 -2.38 -0.02 1.07 16 22 H 0.07 1.17 8.08 -2.39 -0.02 1.15 16 23 H 0.16 3.02 8.06 -2.91 -0.02 3.00 16 24 H 0.40 13.17 8.64 -74.06 -0.64 12.53 16 25 H 0.06 2.58 7.85 -2.39 -0.02 2.56 16 26 H 0.07 2.73 8.00 -2.38 -0.02 2.71 16 27 H -0.01 -0.51 8.14 -2.39 -0.02 -0.53 16 28 H 0.00 -0.27 7.66 -2.38 -0.02 -0.29 16 29 H 0.26 14.90 8.31 -92.71 -0.77 14.13 16 30 H 0.14 3.86 8.04 -2.91 -0.02 3.83 16 Total: -1.00 -64.92 278.84 3.81 -61.11 By element: Atomic # 1 Polarization: 9.88 SS G_CDS: 0.51 Total: 10.39 kcal Atomic # 6 Polarization: -42.95 SS G_CDS: 2.20 Total: -40.75 kcal Atomic # 7 Polarization: -55.96 SS G_CDS: 0.28 Total: -55.68 kcal Atomic # 8 Polarization: -18.19 SS G_CDS: -1.13 Total: -19.32 kcal Atomic # 14 Polarization: 44.00 SS G_CDS: 2.03 Total: 46.03 kcal Atomic # 17 Polarization: -1.71 SS G_CDS: -0.08 Total: -1.78 kcal Total: -64.92 3.81 -61.11 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259842470.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.893 kcal (2) G-P(sol) polarization free energy of solvation -64.923 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.816 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.812 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.112 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.005 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds