Wall clock time and date at job start Thu Apr 9 2020 15:11:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30883 * 1 3 3 Si 1.86797 * 119.99864 * 2 1 4 4 H 1.48504 * 109.47113 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47268 * 299.99833 * 3 2 1 6 6 H 1.48496 * 109.47188 * 60.00283 * 3 2 1 7 7 C 1.39922 * 120.00070 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00111 * 197.74200 * 7 2 1 9 9 C 1.41126 * 119.99786 * 17.74722 * 7 2 1 10 10 C 1.40735 * 120.27541 * 24.63904 * 9 7 2 11 11 C 1.36449 * 119.89624 * 180.09968 * 10 9 7 12 12 C 1.38940 * 120.52773 * 0.04426 * 11 10 9 13 13 Cl 1.73602 * 119.69385 * 179.97438 * 12 11 10 14 14 C 1.38574 * 120.60737 * 359.97063 * 12 11 10 15 15 C 1.38224 * 119.94619 * 359.89219 * 14 12 11 16 16 O 1.35637 * 120.72482 * 180.44220 * 15 14 12 17 17 C 1.43064 * 116.87469 * 343.33311 * 16 15 14 18 18 O 1.43270 * 108.57865 * 47.38479 * 17 16 15 19 19 C 1.43077 * 113.03017 * 294.73432 * 18 17 16 20 20 H 0.96995 * 119.99822 * 359.97438 * 1 2 3 21 21 H 1.08005 * 120.04946 * 0.12001 * 10 9 7 22 22 H 1.07997 * 119.73452 * 180.02562 * 11 10 9 23 23 H 1.08998 * 109.61406 * 167.11046 * 17 16 15 24 24 H 1.08997 * 109.61970 * 287.66073 * 17 16 15 25 25 H 1.08998 * 109.50131 * 288.53337 * 19 18 17 26 26 H 1.09003 * 109.49832 * 168.42914 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2428 1.6177 0.0000 4 1 3.7028 1.3464 0.0006 5 1 1.8841 2.3964 -1.2125 6 1 1.8841 2.3964 1.2125 7 6 2.0085 -1.2118 0.0005 8 1 3.0499 -1.2339 0.2856 9 6 1.3532 -2.4050 -0.3715 10 6 0.2235 -2.3624 -1.2098 11 6 -0.4053 -3.5207 -1.5629 12 6 0.0599 -4.7456 -1.1007 13 17 -0.7572 -6.2059 -1.5631 14 6 1.1701 -4.8124 -0.2741 15 6 1.8259 -3.6531 0.0954 16 8 2.9193 -3.7007 0.8965 17 6 3.1368 -4.9142 1.6225 18 8 2.9873 -6.0181 0.7216 19 6 1.6550 -6.1529 0.2177 20 1 -0.4849 0.8400 0.0004 21 1 -0.1449 -1.4144 -1.5732 22 1 -1.2717 -3.4851 -2.2067 23 1 4.1439 -4.9157 2.0393 24 1 2.4050 -4.9960 2.4262 25 1 0.9993 -6.5077 1.0129 26 1 1.6480 -6.8668 -0.6060 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259856632.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 15:11:13 Heat of formation + Delta-G solvation = -94.639174 kcal Electronic energy + Delta-G solvation = -14983.472224 eV Core-core repulsion = 12245.064233 eV Total energy + Delta-G solvation = -2738.407991 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 240.034 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -41.46875 -38.69712 -37.48331 -36.74590 -35.50051 -32.29393 -31.42723 -27.46663 -27.23650 -26.23923 -22.85278 -21.84242 -19.43635 -18.93356 -18.01623 -17.33060 -16.74594 -16.43765 -15.72687 -15.25861 -15.09694 -14.97086 -14.46494 -13.94423 -13.46942 -13.22692 -13.15743 -12.80171 -12.67584 -12.27843 -11.86814 -11.74348 -11.62090 -11.35796 -11.03190 -10.98074 -9.34673 -9.07296 -8.70952 -6.34176 0.62971 0.81446 1.39690 1.46012 1.54444 1.55528 2.19971 2.45850 2.64499 2.82535 3.48411 3.76885 3.99661 4.27570 4.34713 4.39779 4.44398 4.87359 4.98981 5.13032 5.21652 5.44535 5.55950 5.81081 5.84036 6.05621 6.33026 6.62259 6.75293 6.99669 8.23609 Molecular weight = 240.03amu Principal moments of inertia in cm(-1) A = 0.027754 B = 0.009195 C = 0.007080 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1008.603984 B = 3044.480505 C = 3953.873107 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.813 5.813 2 C 0.037 3.963 3 Si 0.986 3.014 4 H -0.261 1.261 5 H -0.260 1.260 6 H -0.264 1.264 7 C -0.468 4.468 8 H 0.076 0.924 9 C 0.073 3.927 10 C -0.161 4.161 11 C -0.104 4.104 12 C -0.124 4.124 13 Cl -0.090 7.090 14 C -0.169 4.169 15 C 0.002 3.998 16 O -0.342 6.342 17 C 0.214 3.786 18 O -0.402 6.402 19 C 0.112 3.888 20 H 0.294 0.706 21 H 0.122 0.878 22 H 0.123 0.877 23 H 0.165 0.835 24 H 0.061 0.939 25 H 0.078 0.922 26 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.179 -4.772 1.111 5.040 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.439 5.439 2 C -0.180 4.180 3 Si 0.806 3.194 4 H -0.185 1.185 5 H -0.184 1.184 6 H -0.188 1.188 7 C -0.496 4.496 8 H 0.094 0.906 9 C 0.070 3.930 10 C -0.181 4.181 11 C -0.123 4.123 12 C -0.151 4.151 13 Cl -0.061 7.061 14 C -0.172 4.172 15 C -0.042 4.042 16 O -0.259 6.259 17 C 0.101 3.899 18 O -0.322 6.322 19 C 0.036 3.964 20 H 0.105 0.895 21 H 0.140 0.860 22 H 0.141 0.859 23 H 0.182 0.818 24 H 0.079 0.921 25 H 0.096 0.904 26 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 1.187 -4.738 1.079 5.003 hybrid contribution -0.272 0.561 0.095 0.631 sum 0.915 -4.177 1.174 4.434 Atomic orbital electron populations 1.69851 1.08899 1.31130 1.33985 1.26785 0.95548 1.04509 0.91128 0.85094 0.79287 0.75794 0.79208 1.18475 1.18442 1.18832 1.19676 0.98354 0.91852 1.39738 0.90552 1.17585 0.92760 0.90824 0.91848 1.20806 0.99123 0.97358 1.00833 1.20469 1.00181 0.90815 1.00881 1.19783 0.99506 0.86525 1.09334 1.98225 1.78902 1.37073 1.91925 1.19855 0.98576 0.95586 1.03134 1.18650 0.92319 0.93299 0.99942 1.86059 1.42594 1.39178 1.58116 1.24706 1.04224 0.73482 0.87459 1.88142 1.30142 1.49917 1.64032 1.21511 0.82653 0.92966 0.99242 0.89534 0.86011 0.85938 0.81802 0.92141 0.90378 0.86517 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -40.49 10.96 21.83 0.24 -40.25 15 2 C 0.04 1.78 5.14 85.24 0.44 2.22 15 3 Si 0.99 36.98 29.59 68.60 2.03 39.01 15 4 H -0.26 -9.81 7.11 99.48 0.71 -9.11 15 5 H -0.26 -9.25 7.11 99.48 0.71 -8.55 15 6 H -0.26 -9.42 7.11 99.48 0.71 -8.71 15 7 C -0.47 -25.00 8.71 23.39 0.20 -24.80 15 8 H 0.08 4.10 7.62 -2.91 -0.02 4.08 15 9 C 0.07 3.92 5.58 -21.18 -0.12 3.80 15 10 C -0.16 -8.23 8.64 22.46 0.19 -8.03 15 11 C -0.10 -4.75 9.74 22.02 0.21 -4.53 15 12 C -0.12 -5.34 6.33 22.52 0.14 -5.20 15 13 Cl -0.09 -3.12 27.53 -2.72 -0.07 -3.20 15 14 C -0.17 -7.54 5.82 -19.76 -0.11 -7.65 15 15 C 0.00 0.12 6.59 23.04 0.15 0.27 15 16 O -0.34 -15.88 9.72 -66.67 -0.65 -16.52 15 17 C 0.21 7.38 7.95 113.37 0.90 8.28 15 18 O -0.40 -14.65 10.97 -126.14 -1.38 -16.04 15 19 C 0.11 4.05 6.17 71.27 0.44 4.49 15 20 H 0.29 13.02 8.30 -92.71 -0.77 12.25 15 21 H 0.12 6.34 6.17 -2.91 -0.02 6.33 15 22 H 0.12 4.94 8.06 -2.91 -0.02 4.91 15 23 H 0.16 4.27 8.14 -2.39 -0.02 4.25 15 24 H 0.06 1.92 8.13 -2.39 -0.02 1.90 15 25 H 0.08 2.52 8.14 -2.39 -0.02 2.51 15 26 H 0.12 3.87 7.50 -2.39 -0.02 3.85 15 Total: -1.00 -58.26 242.81 3.83 -54.43 By element: Atomic # 1 Polarization: 12.51 SS G_CDS: 1.21 Total: 13.72 kcal Atomic # 6 Polarization: -33.60 SS G_CDS: 2.45 Total: -31.15 kcal Atomic # 7 Polarization: -40.49 SS G_CDS: 0.24 Total: -40.25 kcal Atomic # 8 Polarization: -30.53 SS G_CDS: -2.03 Total: -32.56 kcal Atomic # 14 Polarization: 36.98 SS G_CDS: 2.03 Total: 39.01 kcal Atomic # 17 Polarization: -3.12 SS G_CDS: -0.07 Total: -3.20 kcal Total: -58.26 3.83 -54.43 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259856632.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.205 kcal (2) G-P(sol) polarization free energy of solvation -58.261 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.467 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.828 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.434 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.639 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds