Wall clock time and date at job start Thu Apr 9 2020 15:11:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46901 * 109.47094 * 2 1 4 4 C 1.46904 * 110.99920 * 71.76686 * 3 2 1 5 5 C 1.53004 * 109.46902 * 68.13530 * 4 3 2 6 6 C 1.46900 * 111.00298 * 195.72382 * 3 2 1 7 7 H 1.09003 * 109.46931 * 305.25033 * 6 3 2 8 8 C 1.52993 * 109.47429 * 185.24997 * 6 3 2 9 9 C 1.52996 * 109.47324 * 179.97438 * 8 6 3 10 10 C 1.52999 * 109.47220 * 59.99970 * 9 8 6 11 11 C 1.53003 * 109.46971 * 300.00191 * 10 9 8 12 12 C 1.52996 * 109.47305 * 59.99861 * 11 10 9 13 13 H 1.08999 * 109.47385 * 179.97438 * 12 11 10 14 14 C 1.53007 * 109.47413 * 59.99698 * 12 11 10 15 15 C 1.50707 * 109.46695 * 65.31038 * 14 12 11 16 16 H 1.08001 * 119.99849 * 0.02562 * 15 14 12 17 17 C 1.37876 * 119.99787 * 180.02562 * 15 14 12 18 18 N 1.31516 * 120.00151 * 0.02562 * 17 15 14 19 19 Si 1.86801 * 119.99760 * 180.02562 * 17 15 14 20 20 H 1.48498 * 109.47089 * 90.00343 * 19 17 15 21 21 H 1.48506 * 109.46705 * 209.99980 * 19 17 15 22 22 H 1.48494 * 109.47289 * 329.99551 * 19 17 15 23 23 H 1.08994 * 109.47143 * 63.23595 * 1 2 3 24 24 H 1.09001 * 109.46962 * 183.23564 * 1 2 3 25 25 H 1.08993 * 109.46983 * 303.22953 * 1 2 3 26 26 H 1.09003 * 109.46975 * 239.99949 * 2 1 3 27 27 H 1.09001 * 109.47413 * 120.00107 * 2 1 3 28 28 H 1.09002 * 109.47094 * 188.13530 * 4 3 2 29 29 H 1.08996 * 109.46932 * 308.13804 * 4 3 2 30 30 H 1.09002 * 109.47081 * 61.57930 * 5 4 3 31 31 H 1.08995 * 109.46901 * 181.58004 * 5 4 3 32 32 H 1.08999 * 109.47228 * 301.58257 * 5 4 3 33 33 H 1.09003 * 109.47093 * 299.99936 * 8 6 3 34 34 H 1.09007 * 109.47294 * 59.99605 * 8 6 3 35 35 H 1.08999 * 109.47385 * 180.02562 * 9 8 6 36 36 H 1.08999 * 109.47417 * 299.99692 * 9 8 6 37 37 H 1.09003 * 109.46922 * 59.99996 * 10 9 8 38 38 H 1.09002 * 109.47601 * 179.97438 * 10 9 8 39 39 H 1.08999 * 109.46667 * 299.99666 * 11 10 9 40 40 H 1.09004 * 109.46764 * 179.97438 * 11 10 9 41 41 H 1.08995 * 109.47001 * 185.31221 * 14 12 11 42 42 H 1.08996 * 109.46872 * 305.31849 * 14 12 11 43 43 H 0.96998 * 120.00277 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.7905 2.0244 1.3026 5 6 2.6859 1.3697 2.3565 6 6 3.4397 1.4414 -0.3717 7 1 4.0137 0.7892 0.2867 8 6 3.9463 2.8785 -0.2341 9 6 5.4255 2.9370 -0.6206 10 6 5.5929 2.4737 -2.0691 11 6 5.0863 1.0365 -2.2066 12 6 3.6071 0.9780 -1.8202 13 1 3.2461 -0.0458 -1.9186 14 6 2.8017 1.8933 -2.7446 15 6 2.8603 1.3614 -4.1535 16 1 3.4160 0.4605 -4.3679 17 6 2.2045 2.0250 -5.1687 18 7 1.5283 3.1224 -4.9076 19 14 2.2765 1.3654 -6.9148 20 1 1.1478 0.4260 -7.1360 21 1 2.1764 2.4940 -7.8748 22 1 3.5623 0.6520 -7.1219 23 1 -0.3633 0.4628 -0.9175 24 1 -0.3633 -1.0260 0.0580 25 1 -0.3633 0.5631 0.8596 26 1 1.8933 -0.5139 -0.8900 27 1 1.8934 -0.5138 0.8900 28 1 2.0278 3.0860 1.2330 29 1 0.7455 1.9035 1.5879 30 1 3.7317 1.5148 2.0857 31 1 2.4956 1.8250 3.3284 32 1 2.4682 0.3028 2.4062 33 1 3.3723 3.5306 -0.8925 34 1 3.8274 3.2085 0.7980 35 1 5.7865 3.9608 -0.5222 36 1 5.9992 2.2850 0.0380 37 1 5.0192 3.1258 -2.7277 38 1 6.6467 2.5158 -2.3447 39 1 5.6601 0.3846 -1.5480 40 1 5.2052 0.7066 -3.2387 41 1 1.7646 1.9250 -2.4110 42 1 3.2230 2.8982 -2.7179 43 1 1.0666 3.5890 -5.6217 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259856634.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 15:11:14 Heat of formation + Delta-G solvation = -20.447120 kcal Electronic energy + Delta-G solvation = -18911.419883 eV Core-core repulsion = 16376.570977 eV Total energy + Delta-G solvation = -2534.848906 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 239.194 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.46441 -36.26117 -32.93969 -31.54764 -30.64554 -29.81154 -27.53649 -26.26253 -23.79423 -22.90803 -21.74940 -20.91929 -19.48535 -17.48639 -16.32824 -15.92082 -15.12099 -14.41711 -14.22509 -14.15429 -13.80843 -13.09205 -12.92988 -12.81081 -12.42548 -12.06868 -11.85773 -11.78302 -11.54534 -11.25769 -11.06857 -11.02182 -10.85962 -10.67397 -10.54707 -10.50347 -10.19737 -10.12334 -9.86190 -9.45859 -9.21423 -8.86998 -8.64093 -8.15251 -7.61336 -5.84088 -3.83664 3.38622 3.45228 3.47847 4.36458 4.57315 5.21092 5.24681 5.37851 5.46790 5.51543 5.53928 5.59011 5.63695 5.70575 5.84673 5.88924 5.93126 6.01738 6.06426 6.15311 6.19950 6.23374 6.25301 6.27823 6.38142 6.41259 6.45058 6.65118 6.67873 6.83737 6.88758 7.03457 7.03857 7.11433 7.43370 7.68037 7.76192 7.93761 8.16584 8.30010 8.63681 9.24857 9.77871 11.26703 Molecular weight = 239.19amu Principal moments of inertia in cm(-1) A = 0.022533 B = 0.008491 C = 0.006969 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1242.313349 B = 3296.982064 C = 4016.581420 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.047 3.953 3 N -0.518 5.518 4 C 0.046 3.954 5 C -0.192 4.192 6 C 0.096 3.904 7 H 0.024 0.976 8 C -0.115 4.115 9 C -0.111 4.111 10 C -0.120 4.120 11 C -0.101 4.101 12 C -0.076 4.076 13 H 0.052 0.948 14 C 0.036 3.964 15 C -0.511 4.511 16 H 0.049 0.951 17 C 0.057 3.943 18 N -0.894 5.894 19 Si 0.881 3.119 20 H -0.283 1.283 21 H -0.289 1.289 22 H -0.276 1.276 23 H 0.067 0.933 24 H 0.049 0.951 25 H 0.047 0.953 26 H 0.080 0.920 27 H 0.025 0.975 28 H 0.075 0.925 29 H 0.069 0.931 30 H 0.058 0.942 31 H 0.052 0.948 32 H 0.052 0.948 33 H 0.081 0.919 34 H 0.050 0.950 35 H 0.053 0.947 36 H 0.047 0.953 37 H 0.080 0.920 38 H 0.045 0.955 39 H 0.033 0.967 40 H 0.069 0.931 41 H 0.032 0.968 42 H 0.020 0.980 43 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.303 -2.875 12.148 12.914 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.081 4.081 3 N -0.241 5.241 4 C -0.083 4.083 5 C -0.251 4.251 6 C -0.012 4.012 7 H 0.042 0.958 8 C -0.153 4.153 9 C -0.150 4.150 10 C -0.157 4.157 11 C -0.139 4.139 12 C -0.095 4.095 13 H 0.071 0.929 14 C -0.001 4.001 15 C -0.550 4.550 16 H 0.068 0.932 17 C -0.143 4.143 18 N -0.534 5.534 19 Si 0.710 3.290 20 H -0.210 1.210 21 H -0.215 1.215 22 H -0.201 1.201 23 H 0.086 0.914 24 H 0.068 0.932 25 H 0.066 0.934 26 H 0.099 0.901 27 H 0.043 0.957 28 H 0.094 0.906 29 H 0.088 0.912 30 H 0.077 0.923 31 H 0.071 0.929 32 H 0.071 0.929 33 H 0.100 0.900 34 H 0.069 0.931 35 H 0.072 0.928 36 H 0.066 0.934 37 H 0.099 0.901 38 H 0.064 0.936 39 H 0.052 0.948 40 H 0.088 0.912 41 H 0.050 0.950 42 H 0.038 0.962 43 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 2.922 -2.480 11.702 12.313 hybrid contribution 0.452 -0.835 -0.396 1.029 sum 3.374 -3.315 11.305 12.255 Atomic orbital electron populations 1.21749 0.95446 1.00470 1.02528 1.22113 0.95799 0.89692 1.00500 1.62165 1.18288 1.16721 1.26957 1.22210 0.99050 0.99323 0.87690 1.22457 1.01458 1.01249 0.99896 1.21644 0.86447 0.95959 0.97168 0.95809 1.21689 0.95975 0.97186 1.00453 1.21465 0.96199 0.99953 0.97336 1.21549 0.99627 0.98320 0.96198 1.21417 0.95894 0.95488 1.01096 1.21262 0.95303 1.00160 0.92778 0.92937 1.19112 0.95673 0.93728 0.91539 1.21345 1.30470 1.09586 0.93588 0.93236 1.24955 0.95825 0.95137 0.98389 1.69973 1.33673 1.17618 1.32124 0.86772 0.78204 0.78444 0.85598 1.20950 1.21473 1.20133 0.91386 0.93208 0.93350 0.90135 0.95712 0.90621 0.91248 0.92302 0.92860 0.92880 0.90010 0.93122 0.92803 0.93375 0.90126 0.93635 0.94820 0.91243 0.94965 0.96203 0.93376 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.12 10.02 37.16 0.37 -1.75 16 2 C 0.05 0.74 5.46 -3.82 -0.02 0.72 16 3 N -0.52 -8.85 3.68 -226.64 -0.83 -9.68 16 4 C 0.05 0.65 5.39 -3.82 -0.02 0.63 16 5 C -0.19 -2.37 8.99 37.16 0.33 -2.03 16 6 C 0.10 1.67 0.97 -67.72 -0.07 1.60 16 7 H 0.02 0.41 6.82 -51.93 -0.35 0.05 16 8 C -0.12 -1.93 4.19 -26.74 -0.11 -2.04 16 9 C -0.11 -1.74 5.92 -26.73 -0.16 -1.90 16 10 C -0.12 -2.13 5.65 -26.73 -0.15 -2.28 16 11 C -0.10 -1.91 5.27 -26.73 -0.14 -2.05 16 12 C -0.08 -1.56 1.94 -90.62 -0.18 -1.73 16 13 H 0.05 1.11 6.26 -51.93 -0.32 0.78 16 14 C 0.04 0.91 3.66 -27.88 -0.10 0.81 16 15 C -0.51 -14.25 8.41 -34.44 -0.29 -14.54 16 16 H 0.05 1.36 7.08 -52.49 -0.37 0.99 16 17 C 0.06 1.64 5.46 -17.82 -0.10 1.55 16 18 N -0.89 -26.95 13.29 55.43 0.74 -26.22 16 19 Si 0.88 21.90 29.54 -169.99 -5.02 16.88 16 20 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 21 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 22 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 23 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 24 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 25 H 0.05 0.65 6.51 -51.93 -0.34 0.31 16 26 H 0.08 1.42 5.90 -51.93 -0.31 1.11 16 27 H 0.02 0.36 6.12 -51.93 -0.32 0.04 16 28 H 0.08 1.09 6.47 -51.93 -0.34 0.75 16 29 H 0.07 0.94 6.38 -51.93 -0.33 0.61 16 30 H 0.06 0.76 5.91 -51.93 -0.31 0.45 16 31 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 32 H 0.05 0.66 6.35 -51.93 -0.33 0.33 16 33 H 0.08 1.60 6.55 -51.93 -0.34 1.26 16 34 H 0.05 0.75 5.65 -51.93 -0.29 0.46 16 35 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 36 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.08 1.68 6.31 -51.93 -0.33 1.35 16 38 H 0.04 0.73 8.14 -51.93 -0.42 0.30 16 39 H 0.03 0.57 8.14 -51.93 -0.42 0.14 16 40 H 0.07 1.43 6.97 -51.93 -0.36 1.07 16 41 H 0.03 0.89 7.44 -51.93 -0.39 0.51 16 42 H 0.02 0.53 4.83 -51.93 -0.25 0.28 16 43 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 LS Contribution 306.01 15.07 4.61 4.61 Total: -1.00 -29.05 306.01 -8.51 -37.56 By element: Atomic # 1 Polarization: 7.24 SS G_CDS: -7.37 Total: -0.13 kcal Atomic # 6 Polarization: -22.40 SS G_CDS: -0.63 Total: -23.02 kcal Atomic # 7 Polarization: -35.80 SS G_CDS: -0.10 Total: -35.90 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.02 Total: 16.88 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -29.05 -8.51 -37.56 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259856634.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.113 kcal (2) G-P(sol) polarization free energy of solvation -29.053 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.940 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.507 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.560 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.447 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds