Wall clock time and date at job start Thu Apr 9 2020 15:11:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46900 * 109.47138 * 2 1 4 4 C 1.46905 * 110.99613 * 72.23638 * 3 2 1 5 5 C 1.53002 * 109.46758 * 200.04788 * 4 3 2 6 6 C 1.46898 * 110.99730 * 196.18640 * 3 2 1 7 7 H 1.09000 * 109.46955 * 189.06629 * 6 3 2 8 8 C 1.53002 * 109.47426 * 309.06011 * 6 3 2 9 9 C 1.52991 * 109.47398 * 180.02562 * 8 6 3 10 10 C 1.53008 * 109.47050 * 299.99948 * 9 8 6 11 11 C 1.53003 * 109.46873 * 60.00173 * 10 9 8 12 12 C 1.52995 * 109.46916 * 300.00034 * 11 10 9 13 13 H 1.08999 * 109.47402 * 300.00097 * 12 11 10 14 14 C 1.53002 * 109.47172 * 180.02562 * 12 11 10 15 15 C 1.50693 * 109.47162 * 64.47915 * 14 12 11 16 16 H 1.07998 * 120.00299 * 359.72629 * 15 14 12 17 17 C 1.37877 * 120.00083 * 180.02562 * 15 14 12 18 18 N 1.31515 * 120.00091 * 0.02562 * 17 15 14 19 19 Si 1.86802 * 120.00164 * 179.97438 * 17 15 14 20 20 H 1.48500 * 109.47056 * 60.00138 * 19 17 15 21 21 H 1.48500 * 109.47070 * 180.02562 * 19 17 15 22 22 H 1.48506 * 109.46909 * 300.00347 * 19 17 15 23 23 H 1.08994 * 109.47074 * 63.35288 * 1 2 3 24 24 H 1.09005 * 109.46953 * 183.35730 * 1 2 3 25 25 H 1.09000 * 109.46871 * 303.35441 * 1 2 3 26 26 H 1.09000 * 109.46654 * 240.00097 * 2 1 3 27 27 H 1.09000 * 109.47315 * 120.00711 * 2 1 3 28 28 H 1.08997 * 109.46921 * 320.04606 * 4 3 2 29 29 H 1.08999 * 109.47104 * 80.04973 * 4 3 2 30 30 H 1.09003 * 109.47202 * 301.86665 * 5 4 3 31 31 H 1.08997 * 109.46983 * 61.86441 * 5 4 3 32 32 H 1.09000 * 109.46881 * 181.86241 * 5 4 3 33 33 H 1.08998 * 109.47042 * 300.00562 * 8 6 3 34 34 H 1.08999 * 109.46803 * 59.99885 * 8 6 3 35 35 H 1.08999 * 109.47504 * 59.99988 * 9 8 6 36 36 H 1.09002 * 109.47370 * 180.02562 * 9 8 6 37 37 H 1.09002 * 109.47101 * 180.02562 * 10 9 8 38 38 H 1.08990 * 109.47052 * 300.00184 * 10 9 8 39 39 H 1.08998 * 109.46937 * 179.97438 * 11 10 9 40 40 H 1.09000 * 109.46910 * 59.99792 * 11 10 9 41 41 H 1.09001 * 109.46738 * 304.47763 * 14 12 11 42 42 H 1.08999 * 109.46908 * 184.48243 * 14 12 11 43 43 H 0.96998 * 120.00159 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.8007 2.0207 1.3061 5 6 1.8420 3.5418 1.1462 6 6 3.4369 1.4422 -0.3823 7 1 3.8165 2.4510 -0.2200 8 6 4.2354 0.4537 0.4698 9 6 5.7115 0.5138 0.0721 10 6 5.8568 0.1463 -1.4061 11 6 5.0583 1.1349 -2.2582 12 6 3.5822 1.0748 -1.8604 13 1 3.2028 0.0660 -2.0229 14 6 2.7836 2.0629 -2.7129 15 6 2.8363 1.6370 -4.1574 16 1 3.3881 0.7527 -4.4399 17 6 2.1850 2.3797 -5.1193 18 7 1.5182 3.4601 -4.7763 19 14 2.2508 1.8521 -6.9101 20 1 1.6654 0.4943 -7.0479 21 1 1.4766 2.8118 -7.7376 22 1 3.6632 1.8310 -7.3683 23 1 -0.3633 0.4609 -0.9185 24 1 -0.3633 -1.0260 0.0602 25 1 -0.3633 0.5650 0.8584 26 1 1.8933 -0.5138 -0.8900 27 1 1.8934 -0.5139 0.8899 28 1 0.8276 1.7227 1.6966 29 1 2.5817 1.7068 1.9986 30 1 2.8029 3.8369 0.7246 31 1 1.0401 3.8590 0.4796 32 1 1.7125 4.0132 2.1205 33 1 4.1322 0.7157 1.5228 34 1 3.8558 -0.5551 0.3076 35 1 6.0909 1.5226 0.2346 36 1 6.2803 -0.1908 0.6789 37 1 6.9085 0.1886 -1.6893 38 1 5.4775 -0.8625 -1.5686 39 1 5.1622 0.8734 -3.3112 40 1 5.4377 2.1437 -2.0956 41 1 3.2132 3.0596 -2.6120 42 1 1.7471 2.0783 -2.3761 43 1 1.0597 3.9824 -5.4529 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259856638.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 15:11:16 Heat of formation + Delta-G solvation = -28.337689 kcal Electronic energy + Delta-G solvation = -18723.202740 eV Core-core repulsion = 16188.011673 eV Total energy + Delta-G solvation = -2535.191067 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 239.194 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.37602 -35.91293 -33.21776 -31.48870 -31.05479 -30.20274 -27.44479 -26.07186 -23.17575 -22.73178 -22.43110 -20.24624 -19.90660 -18.39388 -16.18883 -15.64052 -15.09021 -14.46996 -14.20556 -13.99445 -13.79144 -13.63040 -13.17581 -12.54373 -12.31724 -11.91732 -11.78714 -11.73632 -11.51760 -11.41213 -11.18603 -10.98784 -10.88585 -10.74171 -10.66905 -10.52032 -10.31645 -10.08544 -10.00575 -9.65487 -9.40253 -8.93840 -8.71676 -8.18222 -7.58690 -5.83745 -3.83896 3.40148 3.44790 3.46937 4.34219 4.57160 5.09740 5.21339 5.29413 5.39441 5.46167 5.51409 5.55222 5.67109 5.72971 5.81408 5.86471 5.89814 5.95559 6.00235 6.05415 6.10048 6.17324 6.21846 6.28037 6.34695 6.41782 6.49577 6.54538 6.61785 6.67074 6.69245 6.76478 7.10949 7.15927 7.38817 7.68196 7.72860 7.91621 8.14480 8.29232 8.62809 9.24389 9.77765 11.27146 Molecular weight = 239.19amu Principal moments of inertia in cm(-1) A = 0.019733 B = 0.008354 C = 0.006947 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1418.614689 B = 3351.006573 C = 4029.334575 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.052 3.948 3 N -0.518 5.518 4 C 0.048 3.952 5 C -0.145 4.145 6 C 0.091 3.909 7 H 0.075 0.925 8 C -0.150 4.150 9 C -0.111 4.111 10 C -0.121 4.121 11 C -0.105 4.105 12 C -0.068 4.068 13 H 0.054 0.946 14 C 0.037 3.963 15 C -0.512 4.512 16 H 0.050 0.950 17 C 0.057 3.943 18 N -0.894 5.894 19 Si 0.883 3.117 20 H -0.279 1.279 21 H -0.289 1.289 22 H -0.279 1.279 23 H 0.067 0.933 24 H 0.049 0.951 25 H 0.048 0.952 26 H 0.079 0.921 27 H 0.023 0.977 28 H 0.067 0.933 29 H 0.027 0.973 30 H 0.054 0.946 31 H 0.064 0.936 32 H 0.047 0.953 33 H 0.050 0.950 34 H 0.060 0.940 35 H 0.057 0.943 36 H 0.050 0.950 37 H 0.051 0.949 38 H 0.054 0.946 39 H 0.071 0.929 40 H 0.052 0.948 41 H 0.007 0.993 42 H 0.035 0.965 43 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.350 -5.214 12.168 13.655 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.076 4.076 3 N -0.241 5.241 4 C -0.080 4.080 5 C -0.202 4.202 6 C -0.017 4.017 7 H 0.093 0.907 8 C -0.189 4.189 9 C -0.149 4.149 10 C -0.159 4.159 11 C -0.143 4.143 12 C -0.087 4.087 13 H 0.072 0.928 14 C 0.000 4.000 15 C -0.551 4.551 16 H 0.068 0.932 17 C -0.143 4.143 18 N -0.534 5.534 19 Si 0.711 3.289 20 H -0.205 1.205 21 H -0.215 1.215 22 H -0.205 1.205 23 H 0.086 0.914 24 H 0.068 0.932 25 H 0.067 0.933 26 H 0.098 0.902 27 H 0.041 0.959 28 H 0.085 0.915 29 H 0.046 0.954 30 H 0.073 0.927 31 H 0.083 0.917 32 H 0.066 0.934 33 H 0.069 0.931 34 H 0.079 0.921 35 H 0.076 0.924 36 H 0.068 0.932 37 H 0.070 0.930 38 H 0.073 0.927 39 H 0.090 0.910 40 H 0.071 0.929 41 H 0.026 0.974 42 H 0.053 0.947 43 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 2.945 -4.795 11.744 13.023 hybrid contribution 0.489 -0.688 -0.430 0.948 sum 3.435 -5.483 11.314 13.033 Atomic orbital electron populations 1.21789 0.95549 1.00453 1.02604 1.22055 0.95570 0.89714 1.00288 1.62154 1.18043 1.16506 1.27359 1.22100 1.00012 0.95516 0.90412 1.21742 1.02983 0.94921 1.00590 1.21871 0.85510 0.98156 0.96196 0.90653 1.22245 0.96445 1.00918 0.99303 1.21431 0.95870 1.00870 0.96711 1.21620 0.99531 0.99897 0.94838 1.21526 0.95203 0.97927 0.99663 1.21206 0.94917 1.00811 0.91757 0.92805 1.19013 0.95985 0.92680 0.92315 1.21289 1.30930 1.09977 0.92893 0.93156 1.24972 0.95813 0.95206 0.98355 1.69967 1.33967 1.16218 1.33220 0.86815 0.77888 0.78276 0.85891 1.20478 1.21492 1.20512 0.91369 0.93189 0.93310 0.90248 0.95903 0.91484 0.95449 0.92651 0.91652 0.93378 0.93119 0.92111 0.92395 0.93166 0.92997 0.92687 0.91045 0.92909 0.97436 0.94657 0.93299 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.12 10.02 37.16 0.37 -1.75 16 2 C 0.05 0.80 4.29 -3.82 -0.02 0.79 16 3 N -0.52 -8.80 3.47 -226.65 -0.79 -9.59 16 4 C 0.05 0.69 5.44 -3.82 -0.02 0.67 16 5 C -0.14 -2.10 10.05 37.16 0.37 -1.73 16 6 C 0.09 1.58 1.52 -67.71 -0.10 1.47 16 7 H 0.08 1.38 6.58 -51.93 -0.34 1.04 16 8 C -0.15 -2.19 4.47 -26.73 -0.12 -2.31 16 9 C -0.11 -1.52 5.92 -26.73 -0.16 -1.68 16 10 C -0.12 -1.83 5.92 -26.73 -0.16 -1.99 16 11 C -0.11 -1.97 5.01 -26.73 -0.13 -2.11 16 12 C -0.07 -1.38 1.55 -90.62 -0.14 -1.52 16 13 H 0.05 1.13 6.41 -51.93 -0.33 0.80 16 14 C 0.04 0.96 4.36 -27.89 -0.12 0.83 16 15 C -0.51 -14.42 8.41 -34.44 -0.29 -14.71 16 16 H 0.05 1.38 7.01 -52.49 -0.37 1.01 16 17 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 18 N -0.89 -27.22 13.29 55.43 0.74 -26.48 16 19 Si 0.88 22.00 29.54 -169.99 -5.02 16.98 16 20 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 21 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 22 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 23 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 24 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 25 H 0.05 0.65 6.47 -51.93 -0.34 0.32 16 26 H 0.08 1.36 6.09 -51.93 -0.32 1.04 16 27 H 0.02 0.32 7.16 -51.93 -0.37 -0.05 16 28 H 0.07 0.90 6.22 -51.93 -0.32 0.58 16 29 H 0.03 0.37 6.36 -51.93 -0.33 0.04 16 30 H 0.05 0.85 6.74 -51.93 -0.35 0.50 16 31 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 32 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 33 H 0.05 0.69 6.60 -51.93 -0.34 0.35 16 34 H 0.06 0.89 6.66 -51.93 -0.35 0.55 16 35 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 36 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 39 H 0.07 1.46 6.91 -51.93 -0.36 1.10 16 40 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 41 H 0.01 0.21 8.14 -51.93 -0.42 -0.22 16 42 H 0.04 0.99 7.47 -51.93 -0.39 0.60 16 43 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 LS Contribution 316.45 15.07 4.77 4.77 Total: -1.00 -29.36 316.45 -8.78 -38.14 By element: Atomic # 1 Polarization: 6.53 SS G_CDS: -7.87 Total: -1.33 kcal Atomic # 6 Polarization: -21.87 SS G_CDS: -0.61 Total: -22.48 kcal Atomic # 7 Polarization: -36.02 SS G_CDS: -0.05 Total: -36.08 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.02 Total: 16.98 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -29.36 -8.78 -38.14 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259856638.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.802 kcal (2) G-P(sol) polarization free energy of solvation -29.356 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.554 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.783 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.140 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.338 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds