Wall clock time and date at job start Thu Apr 9 2020 15:11:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46900 * 109.47138 * 2 1 4 4 C 1.46905 * 110.99613 * 72.23638 * 3 2 1 5 5 C 1.53002 * 109.46758 * 200.04788 * 4 3 2 6 6 C 1.46898 * 110.99730 * 196.18640 * 3 2 1 7 7 H 1.09000 * 109.46955 * 189.06629 * 6 3 2 8 8 C 1.53002 * 109.47426 * 309.06011 * 6 3 2 9 9 C 1.52991 * 109.47398 * 180.02562 * 8 6 3 10 10 C 1.53008 * 109.47050 * 299.99948 * 9 8 6 11 11 C 1.53003 * 109.46873 * 60.00173 * 10 9 8 12 12 C 1.52995 * 109.46916 * 300.00034 * 11 10 9 13 13 H 1.08999 * 109.47402 * 300.00097 * 12 11 10 14 14 C 1.53002 * 109.47172 * 180.02562 * 12 11 10 15 15 C 1.50693 * 109.47162 * 64.47915 * 14 12 11 16 16 H 1.07998 * 120.00299 * 359.72629 * 15 14 12 17 17 C 1.37877 * 120.00083 * 180.02562 * 15 14 12 18 18 N 1.31515 * 120.00091 * 0.02562 * 17 15 14 19 19 Si 1.86802 * 120.00164 * 179.97438 * 17 15 14 20 20 H 1.48500 * 109.47056 * 60.00138 * 19 17 15 21 21 H 1.48500 * 109.47070 * 180.02562 * 19 17 15 22 22 H 1.48506 * 109.46909 * 300.00347 * 19 17 15 23 23 H 1.08994 * 109.47074 * 63.35288 * 1 2 3 24 24 H 1.09005 * 109.46953 * 183.35730 * 1 2 3 25 25 H 1.09000 * 109.46871 * 303.35441 * 1 2 3 26 26 H 1.09000 * 109.46654 * 240.00097 * 2 1 3 27 27 H 1.09000 * 109.47315 * 120.00711 * 2 1 3 28 28 H 1.08997 * 109.46921 * 320.04606 * 4 3 2 29 29 H 1.08999 * 109.47104 * 80.04973 * 4 3 2 30 30 H 1.09003 * 109.47202 * 301.86665 * 5 4 3 31 31 H 1.08997 * 109.46983 * 61.86441 * 5 4 3 32 32 H 1.09000 * 109.46881 * 181.86241 * 5 4 3 33 33 H 1.08998 * 109.47042 * 300.00562 * 8 6 3 34 34 H 1.08999 * 109.46803 * 59.99885 * 8 6 3 35 35 H 1.08999 * 109.47504 * 59.99988 * 9 8 6 36 36 H 1.09002 * 109.47370 * 180.02562 * 9 8 6 37 37 H 1.09002 * 109.47101 * 180.02562 * 10 9 8 38 38 H 1.08990 * 109.47052 * 300.00184 * 10 9 8 39 39 H 1.08998 * 109.46937 * 179.97438 * 11 10 9 40 40 H 1.09000 * 109.46910 * 59.99792 * 11 10 9 41 41 H 1.09001 * 109.46738 * 304.47763 * 14 12 11 42 42 H 1.08999 * 109.46908 * 184.48243 * 14 12 11 43 43 H 0.96998 * 120.00159 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.8007 2.0207 1.3061 5 6 1.8420 3.5418 1.1462 6 6 3.4369 1.4422 -0.3823 7 1 3.8165 2.4510 -0.2200 8 6 4.2354 0.4537 0.4698 9 6 5.7115 0.5138 0.0721 10 6 5.8568 0.1463 -1.4061 11 6 5.0583 1.1349 -2.2582 12 6 3.5822 1.0748 -1.8604 13 1 3.2028 0.0660 -2.0229 14 6 2.7836 2.0629 -2.7129 15 6 2.8363 1.6370 -4.1574 16 1 3.3881 0.7527 -4.4399 17 6 2.1850 2.3797 -5.1193 18 7 1.5182 3.4601 -4.7763 19 14 2.2508 1.8521 -6.9101 20 1 1.6654 0.4943 -7.0479 21 1 1.4766 2.8118 -7.7376 22 1 3.6632 1.8310 -7.3683 23 1 -0.3633 0.4609 -0.9185 24 1 -0.3633 -1.0260 0.0602 25 1 -0.3633 0.5650 0.8584 26 1 1.8933 -0.5138 -0.8900 27 1 1.8934 -0.5139 0.8899 28 1 0.8276 1.7227 1.6966 29 1 2.5817 1.7068 1.9986 30 1 2.8029 3.8369 0.7246 31 1 1.0401 3.8590 0.4796 32 1 1.7125 4.0132 2.1205 33 1 4.1322 0.7157 1.5228 34 1 3.8558 -0.5551 0.3076 35 1 6.0909 1.5226 0.2346 36 1 6.2803 -0.1908 0.6789 37 1 6.9085 0.1886 -1.6893 38 1 5.4775 -0.8625 -1.5686 39 1 5.1622 0.8734 -3.3112 40 1 5.4377 2.1437 -2.0956 41 1 3.2132 3.0596 -2.6120 42 1 1.7471 2.0783 -2.3761 43 1 1.0597 3.9824 -5.4529 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259856638.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 15:11:16 Heat of formation + Delta-G solvation = -44.451291 kcal Electronic energy + Delta-G solvation = -18723.901478 eV Core-core repulsion = 16188.011673 eV Total energy + Delta-G solvation = -2535.889805 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 239.194 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.74089 -37.24274 -35.22663 -32.92321 -32.61949 -31.49097 -28.97771 -27.77399 -24.94756 -24.01054 -23.76803 -21.70993 -21.34697 -19.79691 -18.32982 -17.03443 -16.51788 -16.32901 -15.47727 -15.26747 -15.13959 -14.90520 -14.64950 -14.16773 -13.79643 -13.56509 -13.42734 -13.08294 -12.95823 -12.77300 -12.65886 -12.51339 -12.40151 -12.26009 -12.19284 -12.01771 -11.70359 -11.60639 -11.38076 -11.33342 -11.05557 -10.71529 -10.58099 -10.41125 -8.85150 -8.08959 -6.17288 1.39127 1.41832 1.49209 2.45100 3.10290 3.23224 3.83439 3.98384 4.09003 4.19215 4.26280 4.36085 4.39613 4.44438 4.57936 4.61814 4.65098 4.69248 4.78745 4.81627 4.84970 4.89258 4.96955 5.06444 5.14903 5.18740 5.23794 5.25665 5.28376 5.33547 5.42944 5.44653 5.54303 5.57794 5.59085 5.74504 5.99663 6.08804 6.39737 6.43758 6.48315 7.01675 7.49272 9.02065 Molecular weight = 239.19amu Principal moments of inertia in cm(-1) A = 0.019733 B = 0.008354 C = 0.006947 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1418.614689 B = 3351.006573 C = 4029.334575 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.054 3.946 3 N -0.548 5.548 4 C 0.050 3.950 5 C -0.142 4.142 6 C 0.097 3.903 7 H 0.060 0.940 8 C -0.140 4.140 9 C -0.108 4.108 10 C -0.113 4.113 11 C -0.103 4.103 12 C -0.059 4.059 13 H 0.046 0.954 14 C 0.051 3.949 15 C -0.527 4.527 16 H 0.054 0.946 17 C -0.001 4.001 18 N -0.932 5.932 19 Si 0.953 3.047 20 H -0.269 1.269 21 H -0.286 1.286 22 H -0.269 1.269 23 H 0.034 0.966 24 H 0.072 0.928 25 H 0.061 0.939 26 H 0.058 0.942 27 H 0.048 0.952 28 H 0.080 0.920 29 H 0.046 0.954 30 H 0.039 0.961 31 H 0.038 0.962 32 H 0.077 0.923 33 H 0.069 0.931 34 H 0.064 0.936 35 H 0.058 0.942 36 H 0.079 0.921 37 H 0.070 0.930 38 H 0.059 0.941 39 H 0.047 0.953 40 H 0.042 0.958 41 H -0.029 1.029 42 H 0.003 0.997 43 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.392 -6.949 13.533 15.835 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.074 4.074 3 N -0.272 5.272 4 C -0.077 4.077 5 C -0.199 4.199 6 C -0.011 4.011 7 H 0.078 0.922 8 C -0.179 4.179 9 C -0.146 4.146 10 C -0.151 4.151 11 C -0.141 4.141 12 C -0.078 4.078 13 H 0.065 0.935 14 C 0.014 3.986 15 C -0.565 4.565 16 H 0.072 0.928 17 C -0.198 4.198 18 N -0.573 5.573 19 Si 0.778 3.222 20 H -0.194 1.194 21 H -0.211 1.211 22 H -0.194 1.194 23 H 0.053 0.947 24 H 0.091 0.909 25 H 0.080 0.920 26 H 0.076 0.924 27 H 0.066 0.934 28 H 0.098 0.902 29 H 0.064 0.936 30 H 0.058 0.942 31 H 0.058 0.942 32 H 0.096 0.904 33 H 0.087 0.913 34 H 0.082 0.918 35 H 0.077 0.923 36 H 0.098 0.902 37 H 0.089 0.911 38 H 0.078 0.922 39 H 0.066 0.934 40 H 0.061 0.939 41 H -0.010 1.010 42 H 0.021 0.979 43 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 3.998 -6.544 13.118 15.195 hybrid contribution 0.123 -0.097 -0.858 0.872 sum 4.121 -6.641 12.260 14.539 Atomic orbital electron populations 1.21746 0.94954 1.01757 1.01390 1.22032 0.96038 0.88999 1.00314 1.62077 1.17957 1.17768 1.29398 1.22139 1.01321 0.94840 0.89437 1.21724 1.01035 0.95693 1.01482 1.21649 0.86663 0.98275 0.94500 0.92166 1.22141 0.96421 0.99866 0.99495 1.21436 0.95552 1.01815 0.95772 1.21544 0.99752 0.98582 0.95185 1.21448 0.94748 0.98746 0.99207 1.21014 0.95045 0.98426 0.93316 0.93525 1.18776 0.94758 0.92353 0.92684 1.21697 1.30590 1.09986 0.94239 0.92769 1.25879 0.95417 0.95196 1.03300 1.70122 1.34950 1.17502 1.34767 0.85692 0.78356 0.78135 0.79993 1.19437 1.21126 1.19408 0.94720 0.90930 0.91997 0.92392 0.93415 0.90169 0.93596 0.94229 0.94236 0.90385 0.91259 0.91755 0.92280 0.90223 0.91136 0.92250 0.93433 0.93896 1.01022 0.97867 0.93290 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.99 10.02 71.98 0.72 -3.26 16 2 C 0.05 1.62 4.29 86.30 0.37 1.99 16 3 N -0.55 -18.62 3.47 -870.97 -3.02 -21.64 16 4 C 0.05 1.37 5.44 86.30 0.47 1.84 16 5 C -0.14 -4.09 10.05 71.98 0.72 -3.36 16 6 C 0.10 3.37 1.52 44.92 0.07 3.44 16 7 H 0.06 2.25 6.58 -2.39 -0.02 2.23 16 8 C -0.14 -3.71 4.47 30.59 0.14 -3.57 16 9 C -0.11 -2.61 5.92 30.59 0.18 -2.43 16 10 C -0.11 -3.18 5.92 30.60 0.18 -3.00 16 11 C -0.10 -3.92 5.01 30.59 0.15 -3.76 16 12 C -0.06 -2.47 1.55 -10.80 -0.02 -2.49 16 13 H 0.05 2.01 6.41 -2.39 -0.02 1.99 16 14 C 0.05 2.80 4.36 29.85 0.13 2.93 16 15 C -0.53 -30.72 8.41 25.60 0.22 -30.51 16 16 H 0.05 3.05 7.01 -2.91 -0.02 3.03 16 17 C 0.00 -0.06 5.46 84.65 0.46 0.40 16 18 N -0.93 -58.90 13.29 21.45 0.28 -58.62 16 19 Si 0.95 45.88 29.54 68.60 2.03 47.90 16 20 H -0.27 -12.47 7.11 99.48 0.71 -11.77 16 21 H -0.29 -13.52 7.11 99.48 0.71 -12.81 16 22 H -0.27 -12.43 7.11 99.48 0.71 -11.73 16 23 H 0.03 1.19 8.14 -2.39 -0.02 1.17 16 24 H 0.07 1.70 8.14 -2.38 -0.02 1.68 16 25 H 0.06 1.56 6.47 -2.39 -0.02 1.55 16 26 H 0.06 1.98 6.09 -2.39 -0.01 1.97 16 27 H 0.05 1.21 7.16 -2.39 -0.02 1.19 16 28 H 0.08 1.99 6.22 -2.39 -0.01 1.97 16 29 H 0.05 1.11 6.36 -2.39 -0.02 1.09 16 30 H 0.04 1.24 6.74 -2.39 -0.02 1.22 16 31 H 0.04 1.31 8.14 -2.39 -0.02 1.29 16 32 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 33 H 0.07 1.62 6.60 -2.39 -0.02 1.60 16 34 H 0.06 1.68 6.66 -2.39 -0.02 1.67 16 35 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 36 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 37 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 38 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 39 H 0.05 1.98 6.91 -2.39 -0.02 1.97 16 40 H 0.04 1.67 8.14 -2.39 -0.02 1.65 16 41 H -0.03 -1.74 8.14 -2.39 -0.02 -1.76 16 42 H 0.00 0.18 7.47 -2.39 -0.02 0.16 16 43 H 0.26 15.46 8.31 -92.71 -0.77 14.69 16 Total: -1.00 -66.09 316.45 4.03 -62.07 By element: Atomic # 1 Polarization: 11.12 SS G_CDS: 0.95 Total: 12.07 kcal Atomic # 6 Polarization: -45.58 SS G_CDS: 3.80 Total: -41.78 kcal Atomic # 7 Polarization: -77.52 SS G_CDS: -2.74 Total: -80.26 kcal Atomic # 14 Polarization: 45.88 SS G_CDS: 2.03 Total: 47.90 kcal Total: -66.09 4.03 -62.07 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259856638.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.615 kcal (2) G-P(sol) polarization free energy of solvation -66.094 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.480 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.028 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.066 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.451 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds