Wall clock time and date at job start Thu Apr 9 2020 15:11:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46900 * 109.47244 * 2 1 4 4 C 1.46903 * 110.99706 * 78.66469 * 3 2 1 5 5 C 1.53006 * 109.46828 * 282.31852 * 4 3 2 6 6 C 1.46905 * 110.99863 * 202.61156 * 3 2 1 7 7 H 1.09005 * 109.46855 * 49.43185 * 6 3 2 8 8 C 1.52995 * 109.47329 * 289.42762 * 6 3 2 9 9 C 1.52997 * 109.47069 * 179.97438 * 8 6 3 10 10 C 1.53004 * 109.47033 * 60.00479 * 9 8 6 11 11 C 1.53005 * 109.46721 * 300.00062 * 10 9 8 12 12 C 1.52993 * 109.47379 * 59.99643 * 11 10 9 13 13 H 1.09008 * 109.46835 * 60.00485 * 12 11 10 14 14 C 1.53002 * 109.47033 * 179.97438 * 12 11 10 15 15 C 1.50695 * 109.47218 * 295.00009 * 14 12 11 16 16 H 1.08005 * 120.00243 * 0.02562 * 15 14 12 17 17 C 1.37878 * 120.00426 * 180.02562 * 15 14 12 18 18 N 1.31519 * 119.99622 * 0.02562 * 17 15 14 19 19 Si 1.86796 * 120.00510 * 180.02562 * 17 15 14 20 20 H 1.48501 * 109.47169 * 89.99775 * 19 17 15 21 21 H 1.48498 * 109.47124 * 210.00060 * 19 17 15 22 22 H 1.48500 * 109.47241 * 329.99768 * 19 17 15 23 23 H 1.09000 * 109.46831 * 289.56140 * 1 2 3 24 24 H 1.08998 * 109.47095 * 49.56101 * 1 2 3 25 25 H 1.08998 * 109.47489 * 169.56199 * 1 2 3 26 26 H 1.09004 * 109.47141 * 239.99979 * 2 1 3 27 27 H 1.08993 * 109.47304 * 120.00645 * 2 1 3 28 28 H 1.08998 * 109.47286 * 42.31990 * 4 3 2 29 29 H 1.08993 * 109.46989 * 162.32330 * 4 3 2 30 30 H 1.09002 * 109.47158 * 319.90091 * 5 4 3 31 31 H 1.08997 * 109.46971 * 79.89303 * 5 4 3 32 32 H 1.08988 * 109.47167 * 199.89574 * 5 4 3 33 33 H 1.08996 * 109.47368 * 300.00052 * 8 6 3 34 34 H 1.09010 * 109.47068 * 60.00065 * 8 6 3 35 35 H 1.08996 * 109.47221 * 300.00329 * 9 8 6 36 36 H 1.09000 * 109.47100 * 180.02562 * 9 8 6 37 37 H 1.08996 * 109.47017 * 180.02562 * 10 9 8 38 38 H 1.08997 * 109.46876 * 59.99463 * 10 9 8 39 39 H 1.09006 * 109.47086 * 299.99375 * 11 10 9 40 40 H 1.09002 * 109.46679 * 180.02562 * 11 10 9 41 41 H 1.08990 * 109.47211 * 55.00486 * 14 12 11 42 42 H 1.09002 * 109.46992 * 175.00409 * 14 12 11 43 43 H 0.97003 * 119.99855 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.9410 1.9711 1.3447 5 6 0.4946 2.3716 1.6426 6 6 3.3888 1.4592 -0.5273 7 1 3.4449 0.9157 -1.4705 8 6 4.3576 0.8355 0.4792 9 6 5.7834 0.9123 -0.0703 10 6 6.1622 2.3764 -0.3027 11 6 5.1933 3.0002 -1.3092 12 6 3.7675 2.9232 -0.7598 13 1 3.7117 3.4672 0.1833 14 6 2.7988 3.5476 -1.7661 15 6 3.0948 5.0190 -1.9019 16 1 3.8943 5.4642 -1.3282 17 6 2.3452 5.7969 -2.7586 18 7 1.3713 5.2549 -3.4568 19 14 2.7126 7.6205 -2.9275 20 1 3.7082 7.8267 -4.0099 21 1 1.4619 8.3487 -3.2601 22 1 3.2598 8.1360 -1.6469 23 1 -0.3633 0.3441 0.9684 24 1 -0.3633 0.6666 -0.7821 25 1 -0.3634 -1.0106 -0.1862 26 1 1.8933 -0.5139 -0.8900 27 1 1.8933 -0.5139 0.8899 28 1 2.2742 1.2390 2.0803 29 1 2.5797 2.8529 1.3946 30 1 0.0468 2.8069 0.7493 31 1 -0.0725 1.4897 1.9404 32 1 0.4792 3.1032 2.4503 33 1 4.3015 1.3790 1.4223 34 1 4.0880 -0.2077 0.6445 35 1 5.8391 0.3685 -1.0132 36 1 6.4735 0.4675 0.6466 37 1 7.1778 2.4311 -0.6946 38 1 6.1064 2.9201 0.6403 39 1 5.2491 2.4564 -2.2523 40 1 5.4635 4.0431 -1.4751 41 1 2.9180 3.0621 -2.7345 42 1 1.7752 3.4138 -1.4161 43 1 0.8441 5.8021 -4.0598 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259856642.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 15:11:18 Heat of formation + Delta-G solvation = -23.779833 kcal Electronic energy + Delta-G solvation = -18693.395875 eV Core-core repulsion = 16158.402452 eV Total energy + Delta-G solvation = -2534.993424 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 239.194 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.36341 -36.05740 -33.22464 -31.21992 -30.73204 -30.67028 -27.64999 -26.07907 -23.16066 -22.66303 -22.20966 -20.29763 -20.02535 -18.48484 -16.18457 -15.75659 -14.94324 -14.80365 -14.37270 -13.96111 -13.69055 -13.36882 -12.76638 -12.58280 -12.44049 -12.10051 -11.94066 -11.77469 -11.57462 -11.31098 -11.13669 -11.08633 -10.91694 -10.74003 -10.60900 -10.41657 -10.26349 -10.06625 -9.95473 -9.63521 -9.39652 -8.95500 -8.71195 -8.19148 -7.63354 -5.84462 -3.84565 3.38499 3.45055 3.47845 4.35047 4.56736 5.11089 5.19163 5.26182 5.36696 5.43388 5.50846 5.59454 5.68363 5.75174 5.80057 5.87390 5.91700 5.97741 6.02814 6.05087 6.08530 6.11843 6.16644 6.22526 6.34881 6.41438 6.50013 6.54962 6.65370 6.66730 6.72530 6.78129 7.09733 7.15402 7.37724 7.68706 7.72239 7.91147 8.13630 8.28156 8.62037 9.23846 9.77213 11.26484 Molecular weight = 239.19amu Principal moments of inertia in cm(-1) A = 0.019261 B = 0.008536 C = 0.006656 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1453.377627 B = 3279.424621 C = 4205.666162 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.053 3.947 3 N -0.518 5.518 4 C 0.053 3.947 5 C -0.151 4.151 6 C 0.091 3.909 7 H 0.073 0.927 8 C -0.149 4.149 9 C -0.111 4.111 10 C -0.121 4.121 11 C -0.105 4.105 12 C -0.069 4.069 13 H 0.055 0.945 14 C 0.036 3.964 15 C -0.511 4.511 16 H 0.051 0.949 17 C 0.056 3.944 18 N -0.894 5.894 19 Si 0.883 3.117 20 H -0.283 1.283 21 H -0.288 1.288 22 H -0.276 1.276 23 H 0.060 0.940 24 H 0.067 0.933 25 H 0.046 0.954 26 H 0.064 0.936 27 H 0.026 0.974 28 H 0.024 0.976 29 H 0.078 0.922 30 H 0.072 0.928 31 H 0.051 0.949 32 H 0.048 0.952 33 H 0.060 0.940 34 H 0.049 0.951 35 H 0.058 0.942 36 H 0.050 0.950 37 H 0.051 0.949 38 H 0.054 0.946 39 H 0.052 0.948 40 H 0.071 0.929 41 H 0.008 0.992 42 H 0.035 0.965 43 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.309 -10.035 8.679 13.674 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.075 4.075 3 N -0.240 5.240 4 C -0.075 4.075 5 C -0.208 4.208 6 C -0.017 4.017 7 H 0.092 0.908 8 C -0.188 4.188 9 C -0.149 4.149 10 C -0.159 4.159 11 C -0.143 4.143 12 C -0.088 4.088 13 H 0.073 0.927 14 C -0.001 4.001 15 C -0.550 4.550 16 H 0.069 0.931 17 C -0.144 4.144 18 N -0.534 5.534 19 Si 0.711 3.289 20 H -0.209 1.209 21 H -0.214 1.214 22 H -0.201 1.201 23 H 0.079 0.921 24 H 0.086 0.914 25 H 0.065 0.935 26 H 0.083 0.917 27 H 0.044 0.956 28 H 0.042 0.958 29 H 0.096 0.904 30 H 0.091 0.909 31 H 0.069 0.931 32 H 0.067 0.933 33 H 0.078 0.922 34 H 0.068 0.932 35 H 0.076 0.924 36 H 0.068 0.932 37 H 0.070 0.930 38 H 0.073 0.927 39 H 0.071 0.929 40 H 0.090 0.910 41 H 0.026 0.974 42 H 0.054 0.946 43 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 2.841 -9.716 8.239 13.052 hybrid contribution 0.718 0.542 0.353 0.966 sum 3.558 -9.174 8.591 13.063 Atomic orbital electron populations 1.22067 0.95452 1.00782 1.02973 1.22064 0.96066 0.89626 0.99715 1.62198 1.22207 1.17009 1.22624 1.22111 0.97808 0.99010 0.88597 1.22039 0.96549 1.00319 1.01927 1.21905 0.85119 0.98483 0.96176 0.90832 1.22272 0.96391 0.99931 1.00206 1.21438 0.95890 0.97312 1.00302 1.21619 0.98886 0.95350 1.00029 1.21526 0.94528 1.01146 0.97122 1.21233 0.95183 0.91983 1.00381 0.92703 1.19027 0.94846 0.93698 0.92532 1.21321 1.15806 0.94443 1.23434 0.93103 1.24976 0.95369 0.97859 0.96178 1.69983 1.20674 1.35392 1.27326 0.86748 0.77538 0.86376 0.78215 1.20934 1.21433 1.20094 0.92129 0.91356 0.93509 0.91728 0.95607 0.95790 0.90398 0.90862 0.93068 0.93297 0.92165 0.93199 0.92370 0.93160 0.92981 0.92684 0.92874 0.91041 0.97403 0.94631 0.93353 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.09 9.31 37.16 0.35 -1.75 16 2 C 0.05 0.77 5.02 -3.83 -0.02 0.75 16 3 N -0.52 -8.80 3.51 -226.65 -0.79 -9.59 16 4 C 0.05 0.83 4.25 -3.82 -0.02 0.81 16 5 C -0.15 -2.24 8.89 37.16 0.33 -1.91 16 6 C 0.09 1.58 1.60 -67.71 -0.11 1.48 16 7 H 0.07 1.34 7.79 -51.93 -0.40 0.94 16 8 C -0.15 -2.16 4.58 -26.74 -0.12 -2.28 16 9 C -0.11 -1.52 5.92 -26.73 -0.16 -1.68 16 10 C -0.12 -1.82 5.92 -26.73 -0.16 -1.98 16 11 C -0.11 -1.96 5.01 -26.73 -0.13 -2.10 16 12 C -0.07 -1.40 1.51 -90.62 -0.14 -1.54 16 13 H 0.05 1.15 6.27 -51.92 -0.33 0.82 16 14 C 0.04 0.93 4.36 -27.88 -0.12 0.80 16 15 C -0.51 -14.38 8.41 -34.44 -0.29 -14.67 16 16 H 0.05 1.40 7.06 -52.48 -0.37 1.03 16 17 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 18 N -0.89 -27.21 13.29 55.43 0.74 -26.48 16 19 Si 0.88 21.98 29.54 -169.99 -5.02 16.96 16 20 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 21 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 22 H -0.28 -6.74 7.11 56.52 0.40 -6.33 16 23 H 0.06 0.77 4.96 -51.93 -0.26 0.52 16 24 H 0.07 1.06 8.14 -51.93 -0.42 0.63 16 25 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 26 H 0.06 0.93 7.67 -51.93 -0.40 0.53 16 27 H 0.03 0.35 7.24 -51.93 -0.38 -0.03 16 28 H 0.02 0.34 7.10 -51.93 -0.37 -0.02 16 29 H 0.08 1.34 5.80 -51.93 -0.30 1.04 16 30 H 0.07 1.27 8.13 -51.93 -0.42 0.85 16 31 H 0.05 0.67 5.53 -51.93 -0.29 0.38 16 32 H 0.05 0.66 8.14 -51.94 -0.42 0.24 16 33 H 0.06 0.88 6.75 -51.93 -0.35 0.53 16 34 H 0.05 0.67 7.27 -51.92 -0.38 0.30 16 35 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 36 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 37 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 39 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 40 H 0.07 1.45 6.95 -51.93 -0.36 1.09 16 41 H 0.01 0.21 8.14 -51.93 -0.42 -0.21 16 42 H 0.04 0.99 7.45 -51.93 -0.39 0.61 16 43 H 0.26 7.43 8.31 -40.82 -0.34 7.10 16 LS Contribution 315.48 15.07 4.75 4.75 Total: -1.00 -29.32 315.48 -8.94 -38.26 By element: Atomic # 1 Polarization: 6.55 SS G_CDS: -7.93 Total: -1.38 kcal Atomic # 6 Polarization: -21.83 SS G_CDS: -0.69 Total: -22.51 kcal Atomic # 7 Polarization: -36.01 SS G_CDS: -0.06 Total: -36.07 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.02 Total: 16.96 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -29.32 -8.94 -38.26 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259856642.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.476 kcal (2) G-P(sol) polarization free energy of solvation -29.318 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.842 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.938 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.256 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.780 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds