Wall clock time and date at job start Thu Apr 9 2020 15:11:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46900 * 109.47244 * 2 1 4 4 C 1.46903 * 110.99706 * 78.66469 * 3 2 1 5 5 C 1.53006 * 109.46828 * 282.31852 * 4 3 2 6 6 C 1.46905 * 110.99863 * 202.61156 * 3 2 1 7 7 H 1.09005 * 109.46855 * 49.43185 * 6 3 2 8 8 C 1.52995 * 109.47329 * 289.42762 * 6 3 2 9 9 C 1.52997 * 109.47069 * 179.97438 * 8 6 3 10 10 C 1.53004 * 109.47033 * 60.00479 * 9 8 6 11 11 C 1.53005 * 109.46721 * 300.00062 * 10 9 8 12 12 C 1.52993 * 109.47379 * 59.99643 * 11 10 9 13 13 H 1.09008 * 109.46835 * 60.00485 * 12 11 10 14 14 C 1.53002 * 109.47033 * 179.97438 * 12 11 10 15 15 C 1.50695 * 109.47218 * 295.00009 * 14 12 11 16 16 H 1.08005 * 120.00243 * 0.02562 * 15 14 12 17 17 C 1.37878 * 120.00426 * 180.02562 * 15 14 12 18 18 N 1.31519 * 119.99622 * 0.02562 * 17 15 14 19 19 Si 1.86796 * 120.00510 * 180.02562 * 17 15 14 20 20 H 1.48501 * 109.47169 * 89.99775 * 19 17 15 21 21 H 1.48498 * 109.47124 * 210.00060 * 19 17 15 22 22 H 1.48500 * 109.47241 * 329.99768 * 19 17 15 23 23 H 1.09000 * 109.46831 * 289.56140 * 1 2 3 24 24 H 1.08998 * 109.47095 * 49.56101 * 1 2 3 25 25 H 1.08998 * 109.47489 * 169.56199 * 1 2 3 26 26 H 1.09004 * 109.47141 * 239.99979 * 2 1 3 27 27 H 1.08993 * 109.47304 * 120.00645 * 2 1 3 28 28 H 1.08998 * 109.47286 * 42.31990 * 4 3 2 29 29 H 1.08993 * 109.46989 * 162.32330 * 4 3 2 30 30 H 1.09002 * 109.47158 * 319.90091 * 5 4 3 31 31 H 1.08997 * 109.46971 * 79.89303 * 5 4 3 32 32 H 1.08988 * 109.47167 * 199.89574 * 5 4 3 33 33 H 1.08996 * 109.47368 * 300.00052 * 8 6 3 34 34 H 1.09010 * 109.47068 * 60.00065 * 8 6 3 35 35 H 1.08996 * 109.47221 * 300.00329 * 9 8 6 36 36 H 1.09000 * 109.47100 * 180.02562 * 9 8 6 37 37 H 1.08996 * 109.47017 * 180.02562 * 10 9 8 38 38 H 1.08997 * 109.46876 * 59.99463 * 10 9 8 39 39 H 1.09006 * 109.47086 * 299.99375 * 11 10 9 40 40 H 1.09002 * 109.46679 * 180.02562 * 11 10 9 41 41 H 1.08990 * 109.47211 * 55.00486 * 14 12 11 42 42 H 1.09002 * 109.46992 * 175.00409 * 14 12 11 43 43 H 0.97003 * 119.99855 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.9410 1.9711 1.3447 5 6 0.4946 2.3716 1.6426 6 6 3.3888 1.4592 -0.5273 7 1 3.4449 0.9157 -1.4705 8 6 4.3576 0.8355 0.4792 9 6 5.7834 0.9123 -0.0703 10 6 6.1622 2.3764 -0.3027 11 6 5.1933 3.0002 -1.3092 12 6 3.7675 2.9232 -0.7598 13 1 3.7117 3.4672 0.1833 14 6 2.7988 3.5476 -1.7661 15 6 3.0948 5.0190 -1.9019 16 1 3.8943 5.4642 -1.3282 17 6 2.3452 5.7969 -2.7586 18 7 1.3713 5.2549 -3.4568 19 14 2.7126 7.6205 -2.9275 20 1 3.7082 7.8267 -4.0099 21 1 1.4619 8.3487 -3.2601 22 1 3.2598 8.1360 -1.6469 23 1 -0.3633 0.3441 0.9684 24 1 -0.3633 0.6666 -0.7821 25 1 -0.3634 -1.0106 -0.1862 26 1 1.8933 -0.5139 -0.8900 27 1 1.8933 -0.5139 0.8899 28 1 2.2742 1.2390 2.0803 29 1 2.5797 2.8529 1.3946 30 1 0.0468 2.8069 0.7493 31 1 -0.0725 1.4897 1.9404 32 1 0.4792 3.1032 2.4503 33 1 4.3015 1.3790 1.4223 34 1 4.0880 -0.2077 0.6445 35 1 5.8391 0.3685 -1.0132 36 1 6.4735 0.4675 0.6466 37 1 7.1778 2.4311 -0.6946 38 1 6.1064 2.9201 0.6403 39 1 5.2491 2.4564 -2.2523 40 1 5.4635 4.0431 -1.4751 41 1 2.9180 3.0621 -2.7345 42 1 1.7752 3.4138 -1.4161 43 1 0.8441 5.8021 -4.0598 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259856642.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 15:11:17 Heat of formation + Delta-G solvation = -39.876935 kcal Electronic energy + Delta-G solvation = -18694.093898 eV Core-core repulsion = 16158.402452 eV Total energy + Delta-G solvation = -2535.691446 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 239.194 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.72793 -37.37366 -35.23321 -32.92744 -32.03961 -31.91388 -29.13328 -27.82796 -24.94194 -23.91123 -23.57524 -21.66265 -21.48111 -19.93339 -18.33844 -17.11209 -16.54685 -16.11261 -15.99725 -15.25989 -15.08400 -14.75077 -14.26469 -14.07769 -13.67939 -13.61787 -13.46204 -13.31316 -13.12269 -12.75142 -12.69887 -12.50272 -12.34157 -12.33285 -12.22268 -11.80203 -11.69965 -11.62903 -11.34892 -11.26518 -10.96010 -10.72065 -10.56401 -10.41637 -8.89992 -8.09407 -6.17637 1.39264 1.40311 1.50786 2.44946 3.10211 3.23014 3.83647 3.96993 4.08200 4.18330 4.23358 4.37943 4.41203 4.53983 4.55270 4.62854 4.65474 4.71157 4.77111 4.79479 4.85191 4.91518 4.97020 4.97927 5.14856 5.22464 5.22917 5.25856 5.30592 5.33426 5.44499 5.54146 5.56850 5.57820 5.59467 5.74375 5.98946 6.08585 6.39100 6.43012 6.48538 7.01465 7.49032 9.01884 Molecular weight = 239.19amu Principal moments of inertia in cm(-1) A = 0.019261 B = 0.008536 C = 0.006656 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1453.377627 B = 3279.424621 C = 4205.666162 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.054 3.946 3 N -0.547 5.547 4 C 0.055 3.945 5 C -0.145 4.145 6 C 0.097 3.903 7 H 0.058 0.942 8 C -0.138 4.138 9 C -0.108 4.108 10 C -0.113 4.113 11 C -0.104 4.104 12 C -0.060 4.060 13 H 0.048 0.952 14 C 0.049 3.951 15 C -0.525 4.525 16 H 0.054 0.946 17 C -0.001 4.001 18 N -0.933 5.933 19 Si 0.953 3.047 20 H -0.275 1.275 21 H -0.285 1.285 22 H -0.265 1.265 23 H 0.068 0.932 24 H 0.037 0.963 25 H 0.069 0.931 26 H 0.061 0.939 27 H 0.048 0.952 28 H 0.048 0.952 29 H 0.057 0.943 30 H 0.037 0.963 31 H 0.072 0.928 32 H 0.060 0.940 33 H 0.063 0.937 34 H 0.068 0.932 35 H 0.059 0.941 36 H 0.079 0.921 37 H 0.070 0.930 38 H 0.059 0.941 39 H 0.043 0.957 40 H 0.047 0.953 41 H -0.028 1.028 42 H 0.004 0.996 43 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.658 -10.868 10.510 15.819 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.074 4.074 3 N -0.271 5.271 4 C -0.072 4.072 5 C -0.203 4.203 6 C -0.011 4.011 7 H 0.076 0.924 8 C -0.177 4.177 9 C -0.146 4.146 10 C -0.151 4.151 11 C -0.142 4.142 12 C -0.079 4.079 13 H 0.066 0.934 14 C 0.012 3.988 15 C -0.563 4.563 16 H 0.072 0.928 17 C -0.198 4.198 18 N -0.574 5.574 19 Si 0.779 3.221 20 H -0.200 1.200 21 H -0.211 1.211 22 H -0.189 1.189 23 H 0.087 0.913 24 H 0.056 0.944 25 H 0.088 0.912 26 H 0.080 0.920 27 H 0.066 0.934 28 H 0.066 0.934 29 H 0.076 0.924 30 H 0.057 0.943 31 H 0.091 0.909 32 H 0.079 0.921 33 H 0.082 0.918 34 H 0.087 0.913 35 H 0.078 0.922 36 H 0.098 0.902 37 H 0.089 0.911 38 H 0.077 0.923 39 H 0.062 0.938 40 H 0.066 0.934 41 H -0.010 1.010 42 H 0.022 0.978 43 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 4.203 -10.555 10.081 15.189 hybrid contribution 0.244 0.794 -0.251 0.867 sum 4.446 -9.761 9.829 14.549 Atomic orbital electron populations 1.22020 0.94939 1.01463 1.02312 1.22109 0.96446 0.88254 1.00544 1.62132 1.22241 1.19018 1.23670 1.22084 0.97809 0.98736 0.88595 1.21989 0.96226 1.01382 1.00680 1.21701 0.86574 0.96042 0.96805 0.92371 1.22159 0.95953 1.00592 0.99041 1.21442 0.95792 0.96182 1.01213 1.21542 0.98527 0.96176 0.98807 1.21451 0.94584 1.00070 0.98065 1.21039 0.94834 0.93893 0.98089 0.93375 1.18800 0.94739 0.93084 0.92141 1.21716 1.15655 0.95737 1.23242 0.92759 1.25882 0.95146 1.02937 0.95861 1.70134 1.21825 1.37296 1.28144 0.85626 0.77509 0.80300 0.78682 1.20045 1.21074 1.18919 0.91307 0.94377 0.91191 0.92018 0.93421 0.93362 0.92444 0.94335 0.90891 0.92123 0.91849 0.91325 0.92220 0.90244 0.91113 0.92270 0.93822 0.93390 1.01007 0.97772 0.93294 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.91 9.31 71.98 0.67 -3.23 16 2 C 0.05 1.49 5.02 86.30 0.43 1.92 16 3 N -0.55 -18.62 3.51 -870.98 -3.05 -21.68 16 4 C 0.06 1.70 4.25 86.30 0.37 2.06 16 5 C -0.15 -4.25 8.89 71.98 0.64 -3.61 16 6 C 0.10 3.36 1.60 44.91 0.07 3.43 16 7 H 0.06 2.17 7.79 -2.38 -0.02 2.15 16 8 C -0.14 -3.64 4.58 30.59 0.14 -3.50 16 9 C -0.11 -2.61 5.92 30.59 0.18 -2.43 16 10 C -0.11 -3.16 5.92 30.60 0.18 -2.97 16 11 C -0.10 -3.90 5.01 30.59 0.15 -3.75 16 12 C -0.06 -2.49 1.51 -10.80 -0.02 -2.50 16 13 H 0.05 2.06 6.27 -2.38 -0.01 2.05 16 14 C 0.05 2.69 4.36 29.85 0.13 2.82 16 15 C -0.53 -30.56 8.41 25.60 0.22 -30.35 16 16 H 0.05 3.05 7.06 -2.91 -0.02 3.03 16 17 C 0.00 -0.08 5.46 84.65 0.46 0.38 16 18 N -0.93 -58.89 13.29 21.45 0.28 -58.60 16 19 Si 0.95 45.84 29.54 68.60 2.03 47.86 16 20 H -0.27 -12.79 7.11 99.48 0.71 -12.08 16 21 H -0.28 -13.47 7.11 99.48 0.71 -12.77 16 22 H -0.26 -12.17 7.11 99.48 0.71 -11.46 16 23 H 0.07 1.65 4.96 -2.39 -0.01 1.63 16 24 H 0.04 1.21 8.14 -2.39 -0.02 1.19 16 25 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 26 H 0.06 1.72 7.67 -2.39 -0.02 1.70 16 27 H 0.05 1.12 7.24 -2.39 -0.02 1.10 16 28 H 0.05 1.24 7.10 -2.39 -0.02 1.23 16 29 H 0.06 1.97 5.80 -2.39 -0.01 1.96 16 30 H 0.04 1.38 8.13 -2.39 -0.02 1.36 16 31 H 0.07 1.78 5.53 -2.39 -0.01 1.77 16 32 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 33 H 0.06 1.66 6.75 -2.39 -0.02 1.64 16 34 H 0.07 1.59 7.27 -2.38 -0.02 1.58 16 35 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 36 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 37 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 38 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 39 H 0.04 1.69 8.14 -2.38 -0.02 1.67 16 40 H 0.05 1.99 6.95 -2.39 -0.02 1.97 16 41 H -0.03 -1.73 8.14 -2.39 -0.02 -1.75 16 42 H 0.00 0.23 7.45 -2.39 -0.02 0.22 16 43 H 0.26 15.41 8.31 -92.71 -0.77 14.64 16 Total: -1.00 -65.87 315.48 3.83 -62.04 By element: Atomic # 1 Polarization: 11.17 SS G_CDS: 0.94 Total: 12.11 kcal Atomic # 6 Polarization: -45.37 SS G_CDS: 3.63 Total: -41.74 kcal Atomic # 7 Polarization: -77.51 SS G_CDS: -2.77 Total: -80.28 kcal Atomic # 14 Polarization: 45.84 SS G_CDS: 2.03 Total: 47.86 kcal Total: -65.87 3.83 -62.04 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259856642.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.167 kcal (2) G-P(sol) polarization free energy of solvation -65.875 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.707 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.830 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.044 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.877 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds