Wall clock time and date at job start Thu Apr 9 2020 15:11:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46899 * 109.46889 * 2 1 4 4 C 1.46896 * 111.00153 * 295.18814 * 3 2 1 5 5 C 1.53002 * 109.47479 * 298.45729 * 4 3 2 6 6 C 1.46906 * 111.00273 * 59.14676 * 3 2 1 7 7 H 1.09000 * 109.46876 * 299.99724 * 6 3 2 8 8 C 1.52999 * 109.46854 * 59.99365 * 6 3 2 9 9 C 1.53005 * 109.46926 * 180.02562 * 8 6 3 10 10 C 1.53007 * 109.46899 * 300.00372 * 9 8 6 11 11 C 1.52999 * 109.47136 * 59.99878 * 10 9 8 12 12 C 1.52995 * 109.47239 * 299.99800 * 11 10 9 13 13 H 1.09001 * 109.47398 * 180.02562 * 12 11 10 14 14 C 1.52997 * 109.47044 * 300.00396 * 12 11 10 15 15 C 1.50698 * 109.47197 * 294.99529 * 14 12 11 16 16 H 1.08007 * 119.99819 * 0.02562 * 15 14 12 17 17 C 1.37879 * 120.00540 * 179.97438 * 15 14 12 18 18 N 1.31511 * 119.99662 * 0.02562 * 17 15 14 19 19 Si 1.86796 * 120.00149 * 180.02562 * 17 15 14 20 20 H 1.48505 * 109.46831 * 180.02562 * 19 17 15 21 21 H 1.48496 * 109.47259 * 60.00170 * 19 17 15 22 22 H 1.48505 * 109.47216 * 299.99646 * 19 17 15 23 23 H 1.09000 * 109.47154 * 174.87157 * 1 2 3 24 24 H 1.09002 * 109.47445 * 294.87633 * 1 2 3 25 25 H 1.09007 * 109.46741 * 54.87153 * 1 2 3 26 26 H 1.08997 * 109.47447 * 239.99853 * 2 1 3 27 27 H 1.08999 * 109.46680 * 119.99600 * 2 1 3 28 28 H 1.09001 * 109.47211 * 58.46058 * 4 3 2 29 29 H 1.09005 * 109.47449 * 178.45696 * 4 3 2 30 30 H 1.08991 * 109.47579 * 185.88100 * 5 4 3 31 31 H 1.08998 * 109.47021 * 305.88629 * 5 4 3 32 32 H 1.09002 * 109.46766 * 65.87528 * 5 4 3 33 33 H 1.08999 * 109.47404 * 60.00929 * 8 6 3 34 34 H 1.08997 * 109.47892 * 299.99999 * 8 6 3 35 35 H 1.09001 * 109.47485 * 180.02562 * 9 8 6 36 36 H 1.09006 * 109.47095 * 59.99508 * 9 8 6 37 37 H 1.09000 * 109.47147 * 299.99776 * 10 9 8 38 38 H 1.09005 * 109.46967 * 179.97438 * 10 9 8 39 39 H 1.09001 * 109.47029 * 179.97438 * 11 10 9 40 40 H 1.09000 * 109.47186 * 59.99922 * 11 10 9 41 41 H 1.09007 * 109.46923 * 175.00254 * 14 12 11 42 42 H 1.08995 * 109.47576 * 54.99840 * 14 12 11 43 43 H 0.97001 * 120.00091 * 359.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.6448 2.0759 -1.2410 5 6 2.2839 1.3633 -2.4346 6 6 1.5320 2.1158 1.1774 7 1 0.4421 2.1305 1.1702 8 6 2.0243 1.4213 2.4487 9 6 1.5159 2.1821 3.6749 10 6 2.0450 3.6174 3.6401 11 6 1.5526 4.3118 2.3688 12 6 2.0610 3.5510 1.1426 13 1 1.7107 4.0459 0.2369 14 6 3.5908 3.5309 1.1530 15 6 4.1127 4.9358 0.9951 16 1 3.4223 5.7606 0.8975 17 6 5.4716 5.1685 0.9762 18 7 6.3124 4.1643 1.0956 19 14 6.1184 6.9100 0.7812 20 1 7.6033 6.8905 0.7912 21 1 5.6264 7.7494 1.9030 22 1 5.6400 7.4745 -0.5064 23 1 -0.3633 -1.0235 -0.0919 24 1 -0.3634 0.4323 0.9323 25 1 -0.3633 0.5914 -0.8406 26 1 1.8934 -0.5138 -0.8899 27 1 1.8932 -0.5138 0.8900 28 1 0.5603 2.0651 -1.3495 29 1 1.9958 3.1072 -1.2030 30 1 2.0930 1.9339 -3.3433 31 1 3.3592 1.2817 -2.2758 32 1 1.8549 0.3662 -2.5347 33 1 3.1142 1.4067 2.4559 34 1 1.6470 0.3990 2.4737 35 1 1.8670 1.6877 4.5807 36 1 0.4260 2.1965 3.6675 37 1 3.1349 3.6031 3.6475 38 1 1.6824 4.1596 4.5135 39 1 1.9292 5.3344 2.3443 40 1 0.4628 4.3260 2.3614 41 1 3.9517 2.9146 0.3295 42 1 3.9424 3.1168 2.0980 43 1 5.9765 3.2600 1.1972 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259856646.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 15:11:19 Heat of formation + Delta-G solvation = -41.139095 kcal Electronic energy + Delta-G solvation = -18963.132011 eV Core-core repulsion = 16427.385833 eV Total energy + Delta-G solvation = -2535.746178 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 239.194 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.98463 -37.77826 -35.28620 -32.92984 -32.11734 -31.28437 -28.98283 -27.70543 -25.19819 -24.87403 -23.20605 -22.50914 -20.87253 -19.52269 -18.28258 -17.54833 -16.72646 -15.80123 -15.63960 -15.56384 -15.30179 -15.09865 -14.28773 -14.20439 -13.96851 -13.77462 -13.48890 -13.09420 -13.04757 -12.84506 -12.75351 -12.50875 -12.29965 -12.18575 -12.13218 -11.96459 -11.92558 -11.66688 -11.40867 -11.06465 -10.90245 -10.71423 -10.36304 -10.31564 -8.99461 -8.54647 -6.21255 1.50863 1.59586 1.78006 2.61119 3.03746 3.28714 3.81100 3.87979 4.03006 4.18814 4.26390 4.28644 4.37179 4.42624 4.46954 4.54535 4.58391 4.60971 4.65489 4.65823 4.77120 4.79230 4.93689 4.99721 5.08141 5.11659 5.16721 5.24019 5.25332 5.27215 5.29120 5.34912 5.44065 5.51974 5.59286 5.75090 5.85732 6.19560 6.32230 6.34502 6.42807 6.77424 7.58130 8.85566 Molecular weight = 239.19amu Principal moments of inertia in cm(-1) A = 0.022570 B = 0.008556 C = 0.006979 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1240.264264 B = 3271.891593 C = 4011.315597 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.043 3.957 3 N -0.547 5.547 4 C 0.048 3.952 5 C -0.139 4.139 6 C 0.100 3.900 7 H 0.046 0.954 8 C -0.107 4.107 9 C -0.106 4.106 10 C -0.117 4.117 11 C -0.099 4.099 12 C -0.067 4.067 13 H 0.042 0.958 14 C 0.040 3.960 15 C -0.602 4.602 16 H 0.041 0.959 17 C -0.042 4.042 18 N -0.943 5.943 19 Si 1.109 2.891 20 H -0.286 1.286 21 H -0.271 1.271 22 H -0.273 1.273 23 H 0.075 0.925 24 H 0.053 0.947 25 H 0.053 0.947 26 H 0.079 0.921 27 H 0.073 0.927 28 H 0.043 0.957 29 H 0.052 0.948 30 H 0.066 0.934 31 H 0.040 0.960 32 H 0.069 0.931 33 H 0.040 0.960 34 H 0.075 0.925 35 H 0.070 0.930 36 H 0.076 0.924 37 H 0.035 0.965 38 H 0.069 0.931 39 H 0.044 0.956 40 H 0.066 0.934 41 H -0.010 1.010 42 H -0.008 1.008 43 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.790 -6.884 -0.248 15.415 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C -0.084 4.084 3 N -0.271 5.271 4 C -0.080 4.080 5 C -0.197 4.197 6 C -0.007 4.007 7 H 0.064 0.936 8 C -0.145 4.145 9 C -0.144 4.144 10 C -0.154 4.154 11 C -0.137 4.137 12 C -0.086 4.086 13 H 0.060 0.940 14 C 0.003 3.997 15 C -0.640 4.640 16 H 0.059 0.941 17 C -0.238 4.238 18 N -0.582 5.582 19 Si 0.931 3.069 20 H -0.212 1.212 21 H -0.197 1.197 22 H -0.199 1.199 23 H 0.094 0.906 24 H 0.072 0.928 25 H 0.072 0.928 26 H 0.097 0.903 27 H 0.092 0.908 28 H 0.061 0.939 29 H 0.070 0.930 30 H 0.085 0.915 31 H 0.059 0.941 32 H 0.088 0.912 33 H 0.059 0.941 34 H 0.093 0.907 35 H 0.089 0.911 36 H 0.095 0.905 37 H 0.054 0.946 38 H 0.087 0.913 39 H 0.063 0.937 40 H 0.084 0.916 41 H 0.009 0.991 42 H 0.011 0.989 43 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -11.900 -6.003 -0.331 13.333 hybrid contribution -1.712 -0.756 -0.066 1.873 sum -13.612 -6.760 -0.397 15.203 Atomic orbital electron populations 1.22324 0.97195 1.02868 1.01707 1.22275 0.93768 0.89614 1.02774 1.62150 1.60334 1.02727 1.01844 1.22071 0.97797 0.98147 0.89992 1.21729 1.00428 1.00808 0.96720 1.21546 0.96034 0.93029 0.90139 0.93640 1.21562 1.00258 0.98923 0.93775 1.21460 1.00887 0.94613 0.97402 1.21489 0.99871 0.96653 0.97403 1.21378 0.99108 0.98705 0.94523 1.21048 0.96662 0.94028 0.96887 0.93958 1.18965 0.92096 0.94396 0.94204 1.22538 0.94029 0.94763 1.52670 0.94053 1.27168 0.94658 1.08168 0.93825 1.70886 1.37801 1.00434 1.49071 0.83045 0.75506 0.70714 0.77613 1.21171 1.19669 1.19851 0.90632 0.92782 0.92812 0.90311 0.90831 0.93921 0.92982 0.91465 0.94110 0.91232 0.94104 0.90702 0.91103 0.90536 0.94604 0.91283 0.93746 0.91555 0.99120 0.98947 0.93675 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.84 9.18 71.98 0.66 -3.18 16 2 C 0.04 1.12 5.43 86.30 0.47 1.59 16 3 N -0.55 -18.34 3.77 -870.98 -3.28 -21.62 16 4 C 0.05 1.53 5.12 86.30 0.44 1.98 16 5 C -0.14 -3.94 9.55 71.98 0.69 -3.26 16 6 C 0.10 3.41 1.22 44.91 0.05 3.47 16 7 H 0.05 1.41 6.40 -2.39 -0.02 1.39 16 8 C -0.11 -3.48 4.69 30.60 0.14 -3.33 16 9 C -0.11 -3.05 5.92 30.60 0.18 -2.87 16 10 C -0.12 -4.10 5.65 30.60 0.17 -3.93 16 11 C -0.10 -3.74 5.26 30.59 0.16 -3.58 16 12 C -0.07 -2.81 1.65 -10.80 -0.02 -2.83 16 13 H 0.04 1.85 6.23 -2.39 -0.01 1.83 16 14 C 0.04 2.12 2.97 29.85 0.09 2.21 16 15 C -0.60 -35.04 8.41 25.60 0.22 -34.82 16 16 H 0.04 2.37 7.06 -2.91 -0.02 2.35 16 17 C -0.04 -2.48 5.46 84.66 0.46 -2.02 16 18 N -0.94 -60.70 13.65 21.45 0.29 -60.41 16 19 Si 1.11 52.46 29.90 68.60 2.05 54.51 16 20 H -0.29 -13.57 7.11 99.48 0.71 -12.86 16 21 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 22 H -0.27 -12.06 7.11 99.48 0.71 -11.36 16 23 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 24 H 0.05 1.17 6.68 -2.39 -0.02 1.15 16 25 H 0.05 1.16 6.26 -2.38 -0.01 1.14 16 26 H 0.08 1.93 6.23 -2.39 -0.01 1.91 16 27 H 0.07 1.90 6.35 -2.39 -0.02 1.88 16 28 H 0.04 1.21 6.26 -2.39 -0.01 1.20 16 29 H 0.05 2.03 5.93 -2.38 -0.01 2.02 16 30 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 31 H 0.04 1.34 8.14 -2.39 -0.02 1.32 16 32 H 0.07 1.64 6.65 -2.39 -0.02 1.62 16 33 H 0.04 1.62 6.55 -2.39 -0.02 1.61 16 34 H 0.07 2.04 6.42 -2.39 -0.02 2.03 16 35 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 36 H 0.08 1.86 8.14 -2.38 -0.02 1.84 16 37 H 0.04 1.54 6.32 -2.39 -0.02 1.53 16 38 H 0.07 2.10 8.14 -2.38 -0.02 2.08 16 39 H 0.04 1.87 6.95 -2.39 -0.02 1.86 16 40 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 41 H -0.01 -0.56 7.32 -2.38 -0.02 -0.57 16 42 H -0.01 -0.43 4.69 -2.39 -0.01 -0.44 16 43 H 0.25 16.70 7.22 -92.71 -0.67 16.03 16 Total: -1.00 -66.78 305.66 3.85 -62.93 By element: Atomic # 1 Polarization: 14.10 SS G_CDS: 1.07 Total: 15.17 kcal Atomic # 6 Polarization: -54.30 SS G_CDS: 3.72 Total: -50.58 kcal Atomic # 7 Polarization: -79.05 SS G_CDS: -2.99 Total: -82.03 kcal Atomic # 14 Polarization: 52.46 SS G_CDS: 2.05 Total: 54.51 kcal Total: -66.78 3.85 -62.93 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259856646.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.791 kcal (2) G-P(sol) polarization free energy of solvation -66.783 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.992 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.853 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.930 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.139 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds