Wall clock time and date at job start Thu Apr 9 2020 15:11:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38289 * 119.93525 * 2 1 4 4 C 1.38222 * 120.03750 * 179.76849 * 3 2 1 5 5 Cl 1.73602 * 120.03808 * 180.23144 * 4 3 2 6 6 C 1.38856 * 119.92170 * 0.48020 * 4 3 2 7 7 O 1.35920 * 120.05667 * 179.74433 * 6 4 3 8 8 C 1.38659 * 119.88198 * 359.77575 * 6 4 3 9 9 C 1.38194 * 119.95869 * 359.97438 * 8 6 4 10 10 C 1.50699 * 119.96131 * 180.02562 * 9 8 6 11 11 H 1.09007 * 109.46990 * 174.62592 * 10 9 8 12 12 C 1.52998 * 109.47637 * 54.62141 * 10 9 8 13 13 C 1.50702 * 109.46763 * 294.61502 * 10 9 8 14 14 H 1.07996 * 120.00260 * 0.02562 * 13 10 9 15 15 C 1.37882 * 119.99947 * 179.97438 * 13 10 9 16 16 N 1.31515 * 119.99800 * 0.02562 * 15 13 10 17 17 Si 1.86796 * 120.00300 * 180.02562 * 15 13 10 18 18 H 1.48498 * 109.47088 * 89.99958 * 17 15 13 19 19 H 1.48495 * 109.47421 * 210.00433 * 17 15 13 20 20 H 1.48508 * 109.46977 * 330.00295 * 17 15 13 21 21 H 1.08998 * 109.46862 * 263.94612 * 1 2 3 22 22 H 1.08998 * 109.46963 * 143.94947 * 1 2 3 23 23 H 1.08992 * 109.47241 * 23.94766 * 1 2 3 24 24 H 1.07996 * 119.98209 * 359.97438 * 3 2 1 25 25 H 0.96698 * 114.01040 * 270.02750 * 7 6 4 26 26 H 1.08005 * 120.02173 * 180.02562 * 8 6 4 27 27 H 1.08999 * 109.47021 * 59.99652 * 12 10 9 28 28 H 1.08998 * 109.47141 * 180.02562 * 12 10 9 29 29 H 1.09000 * 109.46654 * 300.00201 * 12 10 9 30 30 H 0.97004 * 119.99989 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1971 1.1984 0.0000 4 6 3.5793 1.2009 0.0048 5 17 4.4457 2.7053 0.0109 6 6 4.2742 -0.0013 -0.0004 7 8 5.6334 -0.0021 -0.0009 8 6 3.5789 -1.2010 -0.0057 9 6 2.1970 -1.1978 -0.0053 10 6 1.4413 -2.5016 -0.0106 11 1 0.3739 -2.3033 0.0868 12 6 1.9084 -3.3667 1.1618 13 6 1.7011 -3.2275 -1.3054 14 1 2.3490 -2.7888 -2.0499 15 6 1.1125 -4.4523 -1.5393 16 7 0.3240 -4.9867 -0.6325 17 14 1.4351 -5.3524 -3.1440 18 1 2.6221 -6.2312 -2.9886 19 1 0.2513 -6.1771 -3.4956 20 1 1.6884 -4.3645 -4.2234 21 1 -0.3633 -0.1084 1.0219 22 1 -0.3633 -0.8309 -0.6048 23 1 -0.3633 0.9391 -0.4171 24 1 1.6558 2.1329 -0.0004 25 1 6.0265 0.0018 -0.8844 26 1 4.1171 -2.1375 -0.0094 27 1 1.7205 -2.8415 2.0983 28 1 1.3621 -4.3099 1.1576 29 1 2.9758 -3.5649 1.0643 30 1 -0.0898 -5.8486 -0.7969 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259858744.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 15:11:21 Heat of formation + Delta-G solvation = -43.563888 kcal Electronic energy + Delta-G solvation = -14966.862613 eV Core-core repulsion = 12366.502507 eV Total energy + Delta-G solvation = -2600.360106 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 240.066 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.55859 -36.95241 -36.18795 -34.16295 -31.45933 -31.32874 -28.41006 -25.81912 -25.21422 -23.02368 -21.18575 -19.83009 -17.65710 -16.48473 -15.66572 -15.56573 -14.89670 -14.45287 -13.46225 -13.31301 -13.05973 -12.69568 -12.52102 -12.20320 -11.62449 -11.49309 -11.18927 -11.08289 -11.00324 -10.85122 -10.56272 -10.37074 -10.22130 -10.04846 -9.46613 -9.07685 -8.44022 -8.24252 -7.73473 -6.09526 -4.17012 1.60684 1.74385 2.47336 3.24562 3.31965 3.34931 4.00328 4.36964 4.52884 5.19482 5.23331 5.49628 5.69165 5.77984 5.97103 6.12500 6.21382 6.27693 6.58577 6.62215 6.72896 6.85007 6.92586 7.05907 7.21507 7.34758 7.62620 7.83093 7.93275 8.00014 8.28316 8.85125 9.48065 10.95833 Molecular weight = 240.07amu Principal moments of inertia in cm(-1) A = 0.031777 B = 0.006948 C = 0.006456 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 880.942039 B = 4029.006021 C = 4336.170818 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.093 4.093 3 C -0.103 4.103 4 C -0.082 4.082 5 Cl -0.084 7.084 6 C 0.101 3.899 7 O -0.492 6.492 8 C -0.122 4.122 9 C -0.010 4.010 10 C 0.066 3.934 11 H 0.048 0.952 12 C -0.134 4.134 13 C -0.510 4.510 14 H 0.057 0.943 15 C 0.064 3.936 16 N -0.888 5.888 17 Si 0.893 3.107 18 H -0.280 1.280 19 H -0.286 1.286 20 H -0.274 1.274 21 H 0.066 0.934 22 H 0.085 0.915 23 H 0.056 0.944 24 H 0.126 0.874 25 H 0.384 0.616 26 H 0.137 0.863 27 H 0.010 0.990 28 H 0.087 0.913 29 H 0.029 0.971 30 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.730 9.617 0.536 10.329 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.093 4.093 3 C -0.121 4.121 4 C -0.109 4.109 5 Cl -0.056 7.056 6 C 0.055 3.945 7 O -0.302 6.302 8 C -0.141 4.141 9 C -0.010 4.010 10 C 0.047 3.953 11 H 0.066 0.934 12 C -0.192 4.192 13 C -0.548 4.548 14 H 0.075 0.925 15 C -0.138 4.138 16 N -0.526 5.526 17 Si 0.720 3.280 18 H -0.206 1.206 19 H -0.211 1.211 20 H -0.199 1.199 21 H 0.085 0.915 22 H 0.104 0.896 23 H 0.075 0.925 24 H 0.144 0.856 25 H 0.240 0.760 26 H 0.155 0.845 27 H 0.029 0.971 28 H 0.106 0.894 29 H 0.048 0.952 30 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 3.625 9.587 1.179 10.317 hybrid contribution 0.452 -0.360 -1.393 1.508 sum 4.077 9.227 -0.213 10.090 Atomic orbital electron populations 1.20799 0.90813 1.02698 1.02462 1.19832 0.96558 0.91765 1.01143 1.20725 0.91195 0.98413 1.01801 1.21135 0.92581 0.85726 1.11408 1.98310 1.77399 1.32561 1.97317 1.18214 0.82876 0.90806 1.02557 1.84814 1.15854 1.96379 1.33118 1.21311 0.94575 0.96726 1.01474 1.20583 0.93012 0.96809 0.90644 1.18050 0.95257 0.86552 0.95397 0.93418 1.21818 0.99777 1.02562 0.95053 1.21052 1.29237 1.03503 1.01008 0.92518 1.24939 0.94878 0.97228 0.96715 1.69876 1.30966 1.17985 1.33794 0.86579 0.77818 0.79775 0.83794 1.20616 1.21141 1.19884 0.91510 0.89612 0.92525 0.85599 0.76043 0.84530 0.97138 0.89430 0.95215 0.92817 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.80 9.14 36.01 0.33 -1.47 16 2 C -0.09 -1.69 5.88 -104.60 -0.62 -2.31 16 3 C -0.10 -1.70 9.45 -39.57 -0.37 -2.07 16 4 C -0.08 -1.38 6.33 -39.36 -0.25 -1.63 16 5 Cl -0.08 -1.25 28.51 -51.86 -1.48 -2.72 16 6 C 0.10 1.78 6.70 -39.20 -0.26 1.52 16 7 O -0.49 -7.69 12.96 -19.49 -0.25 -7.94 16 8 C -0.12 -2.39 8.84 -39.44 -0.35 -2.74 16 9 C -0.01 -0.21 4.73 -104.64 -0.49 -0.70 16 10 C 0.07 1.54 2.21 -92.92 -0.21 1.34 16 11 H 0.05 1.17 5.70 -51.93 -0.30 0.87 16 12 C -0.13 -3.12 8.72 37.16 0.32 -2.80 16 13 C -0.51 -13.19 8.32 -34.44 -0.29 -13.48 16 14 H 0.06 1.47 7.72 -52.49 -0.41 1.07 16 15 C 0.06 1.68 5.30 -17.82 -0.09 1.59 16 16 N -0.89 -24.11 11.32 55.43 0.63 -23.48 16 17 Si 0.89 20.49 29.54 -169.99 -5.02 15.47 16 18 H -0.28 -6.41 7.11 56.52 0.40 -6.00 16 19 H -0.29 -6.54 7.11 56.52 0.40 -6.13 16 20 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 21 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 22 H 0.09 1.55 6.54 -51.93 -0.34 1.21 16 23 H 0.06 0.76 8.04 -51.93 -0.42 0.34 16 24 H 0.13 1.78 8.06 -52.49 -0.42 1.35 16 25 H 0.38 4.29 9.06 45.56 0.41 4.71 16 26 H 0.14 2.71 7.26 -52.48 -0.38 2.33 16 27 H 0.01 0.21 8.14 -51.93 -0.42 -0.22 16 28 H 0.09 2.23 6.07 -51.93 -0.32 1.91 16 29 H 0.03 0.66 7.10 -51.93 -0.37 0.29 16 30 H 0.26 6.81 8.31 -40.82 -0.34 6.47 16 LS Contribution 269.41 15.07 4.06 4.06 Total: -1.00 -27.58 269.41 -6.86 -34.43 By element: Atomic # 1 Polarization: 5.46 SS G_CDS: -2.51 Total: 2.95 kcal Atomic # 6 Polarization: -20.48 SS G_CDS: -2.28 Total: -22.76 kcal Atomic # 7 Polarization: -24.11 SS G_CDS: 0.63 Total: -23.48 kcal Atomic # 8 Polarization: -7.69 SS G_CDS: -0.25 Total: -7.94 kcal Atomic # 14 Polarization: 20.49 SS G_CDS: -5.02 Total: 15.47 kcal Atomic # 17 Polarization: -1.25 SS G_CDS: -1.48 Total: -2.72 kcal Total LS contribution 4.06 Total: 4.06 kcal Total: -27.58 -6.86 -34.43 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259858744.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.132 kcal (2) G-P(sol) polarization free energy of solvation -27.576 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.709 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.855 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.432 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.564 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds