Wall clock time and date at job start Thu Apr 9 2020 15:11:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38289 * 119.93525 * 2 1 4 4 C 1.38222 * 120.03750 * 179.76849 * 3 2 1 5 5 Cl 1.73602 * 120.03808 * 180.23144 * 4 3 2 6 6 C 1.38856 * 119.92170 * 0.48020 * 4 3 2 7 7 O 1.35920 * 120.05667 * 179.74433 * 6 4 3 8 8 C 1.38659 * 119.88198 * 359.77575 * 6 4 3 9 9 C 1.38194 * 119.95869 * 359.97438 * 8 6 4 10 10 C 1.50699 * 119.96131 * 180.02562 * 9 8 6 11 11 H 1.09007 * 109.46990 * 174.62592 * 10 9 8 12 12 C 1.52998 * 109.47637 * 54.62141 * 10 9 8 13 13 C 1.50702 * 109.46763 * 294.61502 * 10 9 8 14 14 H 1.07996 * 120.00260 * 0.02562 * 13 10 9 15 15 C 1.37882 * 119.99947 * 179.97438 * 13 10 9 16 16 N 1.31515 * 119.99800 * 0.02562 * 15 13 10 17 17 Si 1.86796 * 120.00300 * 180.02562 * 15 13 10 18 18 H 1.48498 * 109.47088 * 89.99958 * 17 15 13 19 19 H 1.48495 * 109.47421 * 210.00433 * 17 15 13 20 20 H 1.48508 * 109.46977 * 330.00295 * 17 15 13 21 21 H 1.08998 * 109.46862 * 263.94612 * 1 2 3 22 22 H 1.08998 * 109.46963 * 143.94947 * 1 2 3 23 23 H 1.08992 * 109.47241 * 23.94766 * 1 2 3 24 24 H 1.07996 * 119.98209 * 359.97438 * 3 2 1 25 25 H 0.96698 * 114.01040 * 270.02750 * 7 6 4 26 26 H 1.08005 * 120.02173 * 180.02562 * 8 6 4 27 27 H 1.08999 * 109.47021 * 59.99652 * 12 10 9 28 28 H 1.08998 * 109.47141 * 180.02562 * 12 10 9 29 29 H 1.09000 * 109.46654 * 300.00201 * 12 10 9 30 30 H 0.97004 * 119.99989 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1971 1.1984 0.0000 4 6 3.5793 1.2009 0.0048 5 17 4.4457 2.7053 0.0109 6 6 4.2742 -0.0013 -0.0004 7 8 5.6334 -0.0021 -0.0009 8 6 3.5789 -1.2010 -0.0057 9 6 2.1970 -1.1978 -0.0053 10 6 1.4413 -2.5016 -0.0106 11 1 0.3739 -2.3033 0.0868 12 6 1.9084 -3.3667 1.1618 13 6 1.7011 -3.2275 -1.3054 14 1 2.3490 -2.7888 -2.0499 15 6 1.1125 -4.4523 -1.5393 16 7 0.3240 -4.9867 -0.6325 17 14 1.4351 -5.3524 -3.1440 18 1 2.6221 -6.2312 -2.9886 19 1 0.2513 -6.1771 -3.4956 20 1 1.6884 -4.3645 -4.2234 21 1 -0.3633 -0.1084 1.0219 22 1 -0.3633 -0.8309 -0.6048 23 1 -0.3633 0.9391 -0.4171 24 1 1.6558 2.1329 -0.0004 25 1 6.0265 0.0018 -0.8844 26 1 4.1171 -2.1375 -0.0094 27 1 1.7205 -2.8415 2.0983 28 1 1.3621 -4.3099 1.1576 29 1 2.9758 -3.5649 1.0643 30 1 -0.0898 -5.8486 -0.7969 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259858744.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 15:11:21 Heat of formation + Delta-G solvation = -59.306394 kcal Electronic energy + Delta-G solvation = -14967.545259 eV Core-core repulsion = 12366.502507 eV Total energy + Delta-G solvation = -2601.042752 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 240.066 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.95470 -38.32158 -37.44224 -35.91935 -33.23489 -32.69544 -30.01378 -27.23304 -27.14177 -24.60579 -22.62973 -21.40558 -19.04885 -18.34669 -17.09897 -16.96092 -16.67654 -15.93142 -14.99544 -14.81263 -14.45371 -14.37945 -13.99608 -13.44869 -13.35428 -13.08279 -12.83053 -12.80212 -12.52834 -12.34245 -12.18911 -12.01951 -11.82855 -11.58830 -11.11305 -10.95119 -10.43022 -9.64379 -9.16960 -8.09152 -6.22507 0.22216 0.34108 1.17628 1.41653 1.43899 1.52595 2.41731 2.64568 3.18922 3.23797 3.88362 4.09846 4.32588 4.38931 4.61122 4.77083 4.84101 4.91726 4.96949 5.13147 5.19425 5.21828 5.31344 5.38326 5.56950 5.67216 5.87051 6.04147 6.07426 6.35204 6.77126 6.85338 7.45025 8.94923 Molecular weight = 240.07amu Principal moments of inertia in cm(-1) A = 0.031777 B = 0.006948 C = 0.006456 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 880.942039 B = 4029.006021 C = 4336.170818 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.100 4.100 3 C -0.093 4.093 4 C -0.083 4.083 5 Cl -0.061 7.061 6 C 0.106 3.894 7 O -0.496 6.496 8 C -0.137 4.137 9 C -0.035 4.035 10 C 0.067 3.933 11 H 0.032 0.968 12 C -0.126 4.126 13 C -0.520 4.520 14 H 0.049 0.951 15 C 0.019 3.981 16 N -0.914 5.914 17 Si 0.949 3.051 18 H -0.277 1.277 19 H -0.283 1.283 20 H -0.271 1.271 21 H 0.075 0.925 22 H 0.059 0.941 23 H 0.087 0.913 24 H 0.157 0.843 25 H 0.405 0.595 26 H 0.123 0.877 27 H 0.024 0.976 28 H 0.062 0.938 29 H 0.028 0.972 30 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.306 11.421 0.087 12.206 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.101 4.101 3 C -0.111 4.111 4 C -0.110 4.110 5 Cl -0.032 7.032 6 C 0.060 3.940 7 O -0.308 6.308 8 C -0.156 4.156 9 C -0.035 4.035 10 C 0.049 3.951 11 H 0.050 0.950 12 C -0.184 4.184 13 C -0.558 4.558 14 H 0.067 0.933 15 C -0.180 4.180 16 N -0.553 5.553 17 Si 0.775 3.225 18 H -0.203 1.203 19 H -0.209 1.209 20 H -0.195 1.195 21 H 0.093 0.907 22 H 0.077 0.923 23 H 0.106 0.894 24 H 0.175 0.825 25 H 0.264 0.736 26 H 0.141 0.859 27 H 0.043 0.957 28 H 0.081 0.919 29 H 0.047 0.953 30 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 4.218 11.400 0.717 12.176 hybrid contribution 0.354 -0.820 -1.234 1.523 sum 4.572 10.580 -0.517 11.537 Atomic orbital electron populations 1.20783 0.89630 1.03249 1.02742 1.20029 0.97565 0.91578 1.00886 1.20989 0.91192 0.98841 1.00112 1.21260 0.92998 0.86470 1.10294 1.98321 1.76932 1.30796 1.97152 1.18131 0.83593 0.90468 1.01797 1.84758 1.14794 1.96264 1.34987 1.21223 0.94342 0.97195 1.02801 1.20367 0.93446 0.96360 0.93365 1.17889 0.94801 0.88102 0.94347 0.94993 1.21678 0.99175 1.01537 0.95961 1.21319 1.28743 1.03847 1.01918 0.93270 1.25624 0.94866 0.98048 0.99469 1.69990 1.31812 1.18259 1.35244 0.85688 0.77650 0.78637 0.80496 1.20317 1.20856 1.19526 0.90668 0.92252 0.89389 0.82540 0.73644 0.85867 0.95718 0.91944 0.95333 0.92875 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -3.34 9.14 71.24 0.65 -2.69 16 2 C -0.10 -3.52 5.88 -19.85 -0.12 -3.64 16 3 C -0.09 -2.81 9.45 22.28 0.21 -2.60 16 4 C -0.08 -2.58 6.33 22.41 0.14 -2.44 16 5 Cl -0.06 -1.60 28.51 -2.72 -0.08 -1.67 16 6 C 0.11 3.56 6.70 22.52 0.15 3.71 16 7 O -0.50 -14.47 12.96 -92.65 -1.20 -15.67 16 8 C -0.14 -5.33 8.84 22.36 0.20 -5.13 16 9 C -0.04 -1.45 4.73 -19.88 -0.09 -1.54 16 10 C 0.07 3.21 2.21 -12.29 -0.03 3.18 16 11 H 0.03 1.62 5.70 -2.38 -0.01 1.61 16 12 C -0.13 -5.98 8.72 71.98 0.63 -5.36 16 13 C -0.52 -27.44 8.32 25.60 0.21 -27.23 16 14 H 0.05 2.60 7.72 -2.91 -0.02 2.58 16 15 C 0.02 1.01 5.30 84.66 0.45 1.46 16 16 N -0.91 -50.68 11.32 21.45 0.24 -50.44 16 17 Si 0.95 42.35 29.54 68.60 2.03 44.38 16 18 H -0.28 -12.17 7.11 99.48 0.71 -11.46 16 19 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 20 H -0.27 -11.81 7.11 99.48 0.71 -11.11 16 21 H 0.07 2.18 8.14 -2.39 -0.02 2.16 16 22 H 0.06 2.16 6.54 -2.39 -0.02 2.14 16 23 H 0.09 2.13 8.04 -2.39 -0.02 2.11 16 24 H 0.16 3.73 8.06 -2.91 -0.02 3.71 16 25 H 0.41 8.11 9.06 -74.06 -0.67 7.44 16 26 H 0.12 5.00 7.26 -2.91 -0.02 4.98 16 27 H 0.02 1.05 8.14 -2.39 -0.02 1.03 16 28 H 0.06 3.27 6.07 -2.39 -0.01 3.26 16 29 H 0.03 1.30 7.10 -2.39 -0.02 1.28 16 30 H 0.26 13.88 8.31 -92.71 -0.77 13.11 16 Total: -1.00 -58.45 269.41 3.89 -54.56 By element: Atomic # 1 Polarization: 10.63 SS G_CDS: 0.49 Total: 11.12 kcal Atomic # 6 Polarization: -44.68 SS G_CDS: 2.40 Total: -42.28 kcal Atomic # 7 Polarization: -50.68 SS G_CDS: 0.24 Total: -50.44 kcal Atomic # 8 Polarization: -14.47 SS G_CDS: -1.20 Total: -15.67 kcal Atomic # 14 Polarization: 42.35 SS G_CDS: 2.03 Total: 44.38 kcal Atomic # 17 Polarization: -1.60 SS G_CDS: -0.08 Total: -1.67 kcal Total: -58.45 3.89 -54.56 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259858744.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.744 kcal (2) G-P(sol) polarization free energy of solvation -58.449 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.194 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.887 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.562 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.306 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds