Wall clock time and date at job start Thu Apr 9 2020 15:11:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38297 * 119.93801 * 2 1 4 4 C 1.38215 * 120.03788 * 180.29435 * 3 2 1 5 5 Cl 1.73595 * 120.03669 * 179.70762 * 4 3 2 6 6 C 1.38853 * 119.92631 * 359.73660 * 4 3 2 7 7 O 1.35923 * 120.06273 * 180.02562 * 6 4 3 8 8 C 1.38670 * 119.87732 * 359.97438 * 6 4 3 9 9 C 1.38189 * 119.96060 * 0.02562 * 8 6 4 10 10 C 1.50701 * 119.96456 * 179.97438 * 9 8 6 11 11 H 1.09002 * 109.47290 * 174.24524 * 10 9 8 12 12 C 1.52999 * 109.47020 * 294.25024 * 10 9 8 13 13 C 1.50707 * 109.46727 * 54.24896 * 10 9 8 14 14 H 1.07991 * 120.00409 * 0.02562 * 13 10 9 15 15 C 1.37878 * 119.99616 * 180.02562 * 13 10 9 16 16 N 1.31517 * 120.00217 * 359.97438 * 15 13 10 17 17 Si 1.86797 * 120.00088 * 179.97438 * 15 13 10 18 18 H 1.48506 * 109.47215 * 59.99814 * 17 15 13 19 19 H 1.48491 * 109.47479 * 179.97438 * 17 15 13 20 20 H 1.48504 * 109.47120 * 300.00140 * 17 15 13 21 21 H 1.09000 * 109.47169 * 264.63213 * 1 2 3 22 22 H 1.08998 * 109.47516 * 24.62603 * 1 2 3 23 23 H 1.08999 * 109.47240 * 144.63335 * 1 2 3 24 24 H 1.07993 * 119.97943 * 0.03004 * 3 2 1 25 25 H 0.96697 * 114.00215 * 269.97756 * 7 6 4 26 26 H 1.08007 * 120.01870 * 179.97438 * 8 6 4 27 27 H 1.09004 * 109.47012 * 179.97438 * 12 10 9 28 28 H 1.08997 * 109.47231 * 299.99517 * 12 10 9 29 29 H 1.08998 * 109.47011 * 59.99726 * 12 10 9 30 30 H 0.96998 * 120.00295 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1972 1.1984 0.0000 4 6 3.5793 1.2009 -0.0061 5 17 4.4456 2.7052 -0.0138 6 6 4.2742 -0.0013 -0.0068 7 8 5.6334 -0.0022 -0.0123 8 6 3.5788 -1.2011 -0.0007 9 6 2.1970 -1.1978 0.0054 10 6 1.4412 -2.5016 0.0114 11 1 0.3748 -2.3030 0.1188 12 6 1.6922 -3.2426 -1.3034 13 6 1.9127 -3.3501 1.1642 14 1 2.6822 -2.9820 1.8265 15 6 1.3615 -4.5965 1.3734 16 7 0.4240 -5.0447 0.5672 17 14 1.9463 -5.6487 2.8018 18 1 1.7027 -4.9299 4.0783 19 1 1.2015 -6.9333 2.8078 20 1 3.3992 -5.9189 2.6553 21 1 -0.3633 -0.0961 1.0232 22 1 -0.3634 0.9342 -0.4282 23 1 -0.3634 -0.8380 -0.5948 24 1 1.6559 2.1329 0.0005 25 1 6.0231 -0.0044 -0.8972 26 1 4.1170 -2.1375 -0.0016 27 1 1.1459 -4.1859 -1.2989 28 1 1.3512 -2.6289 -2.1372 29 1 2.7585 -3.4412 -1.4107 30 1 0.0365 -5.9217 0.7141 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259858745.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 15:11:22 Heat of formation + Delta-G solvation = -43.562932 kcal Electronic energy + Delta-G solvation = -14964.126992 eV Core-core repulsion = 12363.766928 eV Total energy + Delta-G solvation = -2600.360064 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 240.066 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.56100 -36.95942 -36.19076 -34.15654 -31.48128 -31.29069 -28.43577 -25.85301 -25.18269 -22.98826 -21.22636 -19.84677 -17.60947 -16.55541 -15.70089 -15.50069 -14.85922 -14.42297 -13.43771 -13.23843 -13.16569 -12.73854 -12.43450 -12.19697 -11.63989 -11.54602 -11.16651 -11.12099 -10.98900 -10.84765 -10.60004 -10.32796 -10.19104 -10.14514 -9.46413 -9.02445 -8.42413 -8.23795 -7.74857 -6.08059 -4.14794 1.60162 1.74313 2.47169 3.28651 3.33082 3.36866 4.01914 4.38790 4.49924 5.20695 5.24113 5.48522 5.66860 5.77377 5.97399 6.13012 6.20057 6.27576 6.54885 6.62129 6.71014 6.83564 6.91528 7.07070 7.18039 7.32870 7.63873 7.82846 7.93563 8.00389 8.30329 8.87303 9.50290 10.97617 Molecular weight = 240.07amu Principal moments of inertia in cm(-1) A = 0.031425 B = 0.007048 C = 0.006378 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 890.788443 B = 3971.869290 C = 4389.282241 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.094 4.094 3 C -0.103 4.103 4 C -0.081 4.081 5 Cl -0.084 7.084 6 C 0.100 3.900 7 O -0.491 6.491 8 C -0.119 4.119 9 C -0.012 4.012 10 C 0.066 3.934 11 H 0.048 0.952 12 C -0.133 4.133 13 C -0.512 4.512 14 H 0.058 0.942 15 C 0.064 3.936 16 N -0.889 5.889 17 Si 0.893 3.107 18 H -0.277 1.277 19 H -0.287 1.287 20 H -0.276 1.276 21 H 0.071 0.929 22 H 0.055 0.945 23 H 0.078 0.922 24 H 0.126 0.874 25 H 0.383 0.617 26 H 0.139 0.861 27 H 0.088 0.912 28 H 0.009 0.991 29 H 0.028 0.972 30 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.422 9.825 -3.686 11.037 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.095 4.095 3 C -0.122 4.122 4 C -0.108 4.108 5 Cl -0.056 7.056 6 C 0.055 3.945 7 O -0.300 6.300 8 C -0.138 4.138 9 C -0.012 4.012 10 C 0.048 3.952 11 H 0.066 0.934 12 C -0.190 4.190 13 C -0.550 4.550 14 H 0.076 0.924 15 C -0.137 4.137 16 N -0.528 5.528 17 Si 0.720 3.280 18 H -0.202 1.202 19 H -0.212 1.212 20 H -0.202 1.202 21 H 0.089 0.911 22 H 0.074 0.926 23 H 0.097 0.903 24 H 0.144 0.856 25 H 0.238 0.762 26 H 0.156 0.844 27 H 0.106 0.894 28 H 0.028 0.972 29 H 0.047 0.953 30 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 3.315 9.797 -3.101 10.797 hybrid contribution 0.582 -0.434 0.340 0.801 sum 3.897 9.363 -2.761 10.511 Atomic orbital electron populations 1.20774 0.90837 1.02123 1.02808 1.19845 0.96513 0.91834 1.01283 1.20710 0.91204 0.98384 1.01878 1.21139 0.92575 0.85741 1.11343 1.98309 1.77399 1.32557 1.97311 1.18239 0.82863 0.90822 1.02604 1.84844 1.15894 1.96380 1.32884 1.21340 0.94577 0.96745 1.01105 1.20589 0.93111 0.96695 0.90799 1.18034 0.95604 0.86755 0.94822 0.93434 1.21796 0.99813 1.02341 0.95098 1.21085 1.21775 1.00701 1.11407 0.92419 1.24930 0.94839 0.97648 0.96319 1.69859 1.26542 1.19143 1.37231 0.86640 0.78920 0.79541 0.82867 1.20216 1.21222 1.20189 0.91053 0.92564 0.90340 0.85602 0.76204 0.84363 0.89381 0.97169 0.95282 0.92794 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.74 9.13 36.01 0.33 -1.41 16 2 C -0.09 -1.71 5.88 -104.60 -0.62 -2.33 16 3 C -0.10 -1.70 9.46 -39.57 -0.37 -2.07 16 4 C -0.08 -1.37 6.33 -39.36 -0.25 -1.62 16 5 Cl -0.08 -1.24 28.51 -51.86 -1.48 -2.72 16 6 C 0.10 1.77 6.70 -39.19 -0.26 1.51 16 7 O -0.49 -7.71 12.96 -19.50 -0.25 -7.96 16 8 C -0.12 -2.34 8.53 -39.44 -0.34 -2.68 16 9 C -0.01 -0.24 4.75 -104.64 -0.50 -0.74 16 10 C 0.07 1.55 2.20 -92.92 -0.20 1.35 16 11 H 0.05 1.17 5.72 -51.93 -0.30 0.87 16 12 C -0.13 -3.03 8.84 37.16 0.33 -2.70 16 13 C -0.51 -13.44 8.09 -34.44 -0.28 -13.72 16 14 H 0.06 1.54 7.43 -52.49 -0.39 1.15 16 15 C 0.06 1.71 5.30 -17.82 -0.09 1.61 16 16 N -0.89 -24.28 11.32 55.43 0.63 -23.65 16 17 Si 0.89 20.85 29.54 -169.99 -5.02 15.83 16 18 H -0.28 -6.47 7.11 56.52 0.40 -6.06 16 19 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 20 H -0.28 -6.43 7.11 56.52 0.40 -6.02 16 21 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 22 H 0.06 0.73 8.05 -51.93 -0.42 0.31 16 23 H 0.08 1.32 6.54 -51.93 -0.34 0.98 16 24 H 0.13 1.76 8.06 -52.49 -0.42 1.34 16 25 H 0.38 4.16 9.06 45.56 0.41 4.57 16 26 H 0.14 2.79 7.76 -52.48 -0.41 2.38 16 27 H 0.09 2.21 6.07 -51.93 -0.32 1.90 16 28 H 0.01 0.19 8.14 -51.93 -0.42 -0.23 16 29 H 0.03 0.63 7.75 -51.93 -0.40 0.23 16 30 H 0.26 6.88 8.31 -40.82 -0.34 6.54 16 LS Contribution 269.88 15.07 4.07 4.07 Total: -1.00 -27.92 269.88 -6.87 -34.80 By element: Atomic # 1 Polarization: 4.99 SS G_CDS: -2.56 Total: 2.43 kcal Atomic # 6 Polarization: -20.54 SS G_CDS: -2.25 Total: -22.79 kcal Atomic # 7 Polarization: -24.28 SS G_CDS: 0.63 Total: -23.65 kcal Atomic # 8 Polarization: -7.71 SS G_CDS: -0.25 Total: -7.96 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -5.02 Total: 15.83 kcal Atomic # 17 Polarization: -1.24 SS G_CDS: -1.48 Total: -2.72 kcal Total LS contribution 4.07 Total: 4.07 kcal Total: -27.92 -6.87 -34.80 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259858745.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.767 kcal (2) G-P(sol) polarization free energy of solvation -27.925 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.691 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.871 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.796 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.563 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds