Wall clock time and date at job start Thu Apr 9 2020 15:11:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38297 * 119.93801 * 2 1 4 4 C 1.38215 * 120.03788 * 180.29435 * 3 2 1 5 5 Cl 1.73595 * 120.03669 * 179.70762 * 4 3 2 6 6 C 1.38853 * 119.92631 * 359.73660 * 4 3 2 7 7 O 1.35923 * 120.06273 * 180.02562 * 6 4 3 8 8 C 1.38670 * 119.87732 * 359.97438 * 6 4 3 9 9 C 1.38189 * 119.96060 * 0.02562 * 8 6 4 10 10 C 1.50701 * 119.96456 * 179.97438 * 9 8 6 11 11 H 1.09002 * 109.47290 * 174.24524 * 10 9 8 12 12 C 1.52999 * 109.47020 * 294.25024 * 10 9 8 13 13 C 1.50707 * 109.46727 * 54.24896 * 10 9 8 14 14 H 1.07991 * 120.00409 * 0.02562 * 13 10 9 15 15 C 1.37878 * 119.99616 * 180.02562 * 13 10 9 16 16 N 1.31517 * 120.00217 * 359.97438 * 15 13 10 17 17 Si 1.86797 * 120.00088 * 179.97438 * 15 13 10 18 18 H 1.48506 * 109.47215 * 59.99814 * 17 15 13 19 19 H 1.48491 * 109.47479 * 179.97438 * 17 15 13 20 20 H 1.48504 * 109.47120 * 300.00140 * 17 15 13 21 21 H 1.09000 * 109.47169 * 264.63213 * 1 2 3 22 22 H 1.08998 * 109.47516 * 24.62603 * 1 2 3 23 23 H 1.08999 * 109.47240 * 144.63335 * 1 2 3 24 24 H 1.07993 * 119.97943 * 0.03004 * 3 2 1 25 25 H 0.96697 * 114.00215 * 269.97756 * 7 6 4 26 26 H 1.08007 * 120.01870 * 179.97438 * 8 6 4 27 27 H 1.09004 * 109.47012 * 179.97438 * 12 10 9 28 28 H 1.08997 * 109.47231 * 299.99517 * 12 10 9 29 29 H 1.08998 * 109.47011 * 59.99726 * 12 10 9 30 30 H 0.96998 * 120.00295 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1972 1.1984 0.0000 4 6 3.5793 1.2009 -0.0061 5 17 4.4456 2.7052 -0.0138 6 6 4.2742 -0.0013 -0.0068 7 8 5.6334 -0.0022 -0.0123 8 6 3.5788 -1.2011 -0.0007 9 6 2.1970 -1.1978 0.0054 10 6 1.4412 -2.5016 0.0114 11 1 0.3748 -2.3030 0.1188 12 6 1.6922 -3.2426 -1.3034 13 6 1.9127 -3.3501 1.1642 14 1 2.6822 -2.9820 1.8265 15 6 1.3615 -4.5965 1.3734 16 7 0.4240 -5.0447 0.5672 17 14 1.9463 -5.6487 2.8018 18 1 1.7027 -4.9299 4.0783 19 1 1.2015 -6.9333 2.8078 20 1 3.3992 -5.9189 2.6553 21 1 -0.3633 -0.0961 1.0232 22 1 -0.3634 0.9342 -0.4282 23 1 -0.3634 -0.8380 -0.5948 24 1 1.6559 2.1329 0.0005 25 1 6.0231 -0.0044 -0.8972 26 1 4.1170 -2.1375 -0.0016 27 1 1.1459 -4.1859 -1.2989 28 1 1.3512 -2.6289 -2.1372 29 1 2.7585 -3.4412 -1.4107 30 1 0.0365 -5.9217 0.7141 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259858745.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 15:11:22 Heat of formation + Delta-G solvation = -59.652703 kcal Electronic energy + Delta-G solvation = -14964.824697 eV Core-core repulsion = 12363.766928 eV Total energy + Delta-G solvation = -2601.057769 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 240.066 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.95551 -38.32867 -37.44359 -35.92032 -33.22985 -32.68796 -30.03359 -27.26867 -27.10719 -24.56045 -22.67716 -21.41569 -18.99765 -18.41279 -17.09592 -16.93976 -16.68049 -15.92037 -14.84467 -14.76723 -14.71371 -14.29339 -13.96049 -13.44626 -13.37670 -13.04801 -12.86238 -12.81299 -12.55632 -12.35145 -12.20818 -12.07216 -11.76215 -11.63777 -11.11190 -10.92414 -10.43088 -9.63927 -9.17319 -8.10246 -6.22592 0.21902 0.34270 1.17655 1.41711 1.42448 1.49908 2.41531 2.64997 3.17386 3.22663 3.89097 4.09896 4.32647 4.38800 4.61911 4.78549 4.84922 4.89568 4.98499 5.11951 5.20034 5.25461 5.30270 5.36383 5.56901 5.67455 5.85956 6.03966 6.08567 6.36576 6.78610 6.85066 7.44694 8.93865 Molecular weight = 240.07amu Principal moments of inertia in cm(-1) A = 0.031425 B = 0.007048 C = 0.006378 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 890.788443 B = 3971.869290 C = 4389.282241 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.101 4.101 3 C -0.093 4.093 4 C -0.083 4.083 5 Cl -0.061 7.061 6 C 0.105 3.895 7 O -0.496 6.496 8 C -0.135 4.135 9 C -0.036 4.036 10 C 0.067 3.933 11 H 0.032 0.968 12 C -0.123 4.123 13 C -0.525 4.525 14 H 0.046 0.954 15 C 0.021 3.979 16 N -0.912 5.912 17 Si 0.946 3.054 18 H -0.275 1.275 19 H -0.281 1.281 20 H -0.274 1.274 21 H 0.068 0.932 22 H 0.091 0.909 23 H 0.062 0.938 24 H 0.158 0.842 25 H 0.405 0.595 26 H 0.122 0.878 27 H 0.061 0.939 28 H 0.028 0.972 29 H 0.027 0.973 30 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.935 11.601 -3.597 12.767 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.101 4.101 3 C -0.111 4.111 4 C -0.110 4.110 5 Cl -0.032 7.032 6 C 0.060 3.940 7 O -0.309 6.309 8 C -0.154 4.154 9 C -0.037 4.037 10 C 0.049 3.951 11 H 0.050 0.950 12 C -0.181 4.181 13 C -0.563 4.563 14 H 0.065 0.935 15 C -0.178 4.178 16 N -0.551 5.551 17 Si 0.772 3.228 18 H -0.201 1.201 19 H -0.207 1.207 20 H -0.200 1.200 21 H 0.086 0.914 22 H 0.109 0.891 23 H 0.081 0.919 24 H 0.175 0.825 25 H 0.264 0.736 26 H 0.140 0.860 27 H 0.080 0.920 28 H 0.047 0.953 29 H 0.046 0.954 30 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 3.844 11.579 -3.027 12.570 hybrid contribution 0.503 -0.882 0.282 1.054 sum 4.347 10.697 -2.745 11.868 Atomic orbital electron populations 1.20778 0.89540 1.03338 1.02629 1.20044 0.97585 0.91559 1.00934 1.20987 0.91170 0.98859 1.00110 1.21260 0.93013 0.86449 1.10259 1.98320 1.76946 1.30780 1.97147 1.18150 0.83556 0.90489 1.01851 1.84782 1.14873 1.96267 1.34934 1.21229 0.94409 0.97118 1.02614 1.20374 0.93488 0.96300 0.93490 1.17874 0.95013 0.88194 0.94022 0.95006 1.21635 0.99277 1.01328 0.95832 1.21361 1.21376 1.01372 1.12166 0.93526 1.25584 0.95094 0.98754 0.98413 1.69967 1.27365 1.19391 1.38403 0.85797 0.78487 0.78237 0.80273 1.20066 1.20661 1.19972 0.91363 0.89056 0.91924 0.82482 0.73616 0.85995 0.91983 0.95285 0.95390 0.92832 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -3.24 9.13 71.24 0.65 -2.59 16 2 C -0.10 -3.51 5.88 -19.85 -0.12 -3.63 16 3 C -0.09 -2.78 9.46 22.28 0.21 -2.57 16 4 C -0.08 -2.57 6.33 22.41 0.14 -2.43 16 5 Cl -0.06 -1.59 28.51 -2.72 -0.08 -1.67 16 6 C 0.11 3.56 6.70 22.52 0.15 3.71 16 7 O -0.50 -14.63 12.96 -92.68 -1.20 -15.83 16 8 C -0.13 -5.31 8.53 22.36 0.19 -5.12 16 9 C -0.04 -1.49 4.75 -19.88 -0.09 -1.59 16 10 C 0.07 3.23 2.20 -12.28 -0.03 3.20 16 11 H 0.03 1.61 5.72 -2.39 -0.01 1.60 16 12 C -0.12 -5.73 8.84 71.98 0.64 -5.09 16 13 C -0.52 -28.18 8.09 25.60 0.21 -27.97 16 14 H 0.05 2.54 7.43 -2.92 -0.02 2.52 16 15 C 0.02 1.12 5.30 84.65 0.45 1.57 16 16 N -0.91 -50.75 11.32 21.45 0.24 -50.51 16 17 Si 0.95 43.15 29.54 68.60 2.03 45.18 16 18 H -0.28 -12.40 7.11 99.48 0.71 -11.70 16 19 H -0.28 -12.49 7.11 99.48 0.71 -11.79 16 20 H -0.27 -12.33 7.11 99.48 0.71 -11.62 16 21 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 22 H 0.09 2.09 8.05 -2.39 -0.02 2.07 16 23 H 0.06 2.09 6.54 -2.39 -0.02 2.08 16 24 H 0.16 3.70 8.06 -2.91 -0.02 3.67 16 25 H 0.41 7.89 9.06 -74.06 -0.67 7.21 16 26 H 0.12 5.07 7.76 -2.91 -0.02 5.05 16 27 H 0.06 3.20 6.07 -2.38 -0.01 3.19 16 28 H 0.03 1.18 8.14 -2.39 -0.02 1.17 16 29 H 0.03 1.25 7.75 -2.39 -0.02 1.23 16 30 H 0.26 13.97 8.31 -92.71 -0.77 13.20 16 Total: -1.00 -59.27 269.88 3.88 -55.39 By element: Atomic # 1 Polarization: 9.47 SS G_CDS: 0.49 Total: 9.96 kcal Atomic # 6 Polarization: -44.91 SS G_CDS: 2.40 Total: -42.51 kcal Atomic # 7 Polarization: -50.75 SS G_CDS: 0.24 Total: -50.51 kcal Atomic # 8 Polarization: -14.63 SS G_CDS: -1.20 Total: -15.83 kcal Atomic # 14 Polarization: 43.15 SS G_CDS: 2.03 Total: 45.18 kcal Atomic # 17 Polarization: -1.59 SS G_CDS: -0.08 Total: -1.67 kcal Total: -59.27 3.88 -55.39 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259858745.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.262 kcal (2) G-P(sol) polarization free energy of solvation -59.270 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.532 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.879 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.391 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.653 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds