Wall clock time and date at job start Thu Apr 9 2020 15:11:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86807 * 119.99920 * 2 1 4 4 H 1.48497 * 109.47029 * 239.99880 * 3 2 1 5 5 H 1.48499 * 109.47003 * 359.97438 * 3 2 1 6 6 H 1.48492 * 109.47251 * 119.99700 * 3 2 1 7 7 C 1.37876 * 120.00343 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99834 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00160 * 0.02562 * 7 2 1 10 10 C 1.50706 * 115.54541 * 325.58399 * 9 7 2 11 11 C 1.38213 * 120.00337 * 114.62010 * 10 9 7 12 12 C 1.38325 * 120.00981 * 179.97438 * 11 10 9 13 13 Cl 1.73601 * 119.98674 * 180.02562 * 12 11 10 14 14 C 1.38375 * 120.02929 * 359.97438 * 12 11 10 15 15 C 1.38173 * 120.00863 * 359.97438 * 14 12 11 16 16 C 1.38434 * 120.00505 * 294.34713 * 10 9 7 17 17 F 1.35096 * 120.01480 * 359.97438 * 16 10 9 18 18 C 1.52995 * 117.50043 * 111.24928 * 9 7 2 19 19 C 1.52991 * 117.50126 * 179.91352 * 9 7 2 20 20 H 0.96999 * 120.00400 * 0.02562 * 1 2 3 21 21 H 1.07995 * 119.99446 * 359.97438 * 11 10 9 22 22 H 1.08001 * 119.99892 * 180.02562 * 14 12 11 23 23 H 1.08001 * 120.00761 * 180.02562 * 15 14 12 24 24 H 1.08999 * 117.50268 * 215.00515 * 18 9 7 25 25 H 1.09002 * 117.49648 * 0.03103 * 18 9 7 26 26 H 1.09005 * 117.49994 * 359.97438 * 19 9 7 27 27 H 1.09005 * 117.50200 * 144.97436 * 19 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1027 1.6965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1939 0.0010 9 6 1.2511 -2.4992 0.0005 10 6 -0.0455 -2.5011 0.7686 11 6 -1.2437 -2.6730 0.1014 12 6 -2.4339 -2.6753 0.8063 13 17 -3.9385 -2.8920 -0.0322 14 6 -2.4257 -2.5060 2.1796 15 6 -1.2284 -2.3351 2.8477 16 6 -0.0363 -2.3362 2.1430 17 9 1.1350 -2.1741 2.7963 18 6 1.3244 -3.3572 -1.2641 19 6 2.0732 -3.7894 -0.0009 20 1 -0.4851 0.8400 -0.0004 21 1 -1.2507 -2.8056 -0.9704 22 1 -3.3553 -2.5083 2.7295 23 1 -1.2220 -2.2033 3.9196 24 1 0.4349 -3.9231 -1.5406 25 1 1.9180 -2.9779 -2.0959 26 1 3.1591 -3.6943 -0.0023 27 1 1.6765 -4.6397 0.5539 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259866793.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 15:11:24 Heat of formation + Delta-G solvation = -6.916098 kcal Electronic energy + Delta-G solvation = -15072.522773 eV Core-core repulsion = 12350.291530 eV Total energy + Delta-G solvation = -2722.231243 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 240.041 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -47.77748 -38.57577 -36.34556 -35.46493 -32.21927 -29.99162 -29.17312 -25.73252 -22.78242 -22.06011 -20.91457 -19.38841 -17.19265 -16.33574 -15.53225 -15.10958 -14.80268 -14.40907 -13.87241 -13.39428 -13.09858 -12.47876 -12.46181 -12.08430 -11.70529 -11.05526 -11.00701 -10.80067 -10.61851 -10.53734 -10.35541 -10.31163 -9.61142 -9.23243 -9.01544 -8.45361 -8.03779 -7.53942 -6.06407 -4.18206 1.91591 2.09401 2.73994 3.26285 3.31532 3.33908 4.30662 4.38445 4.87573 5.20314 5.40249 5.52538 5.57841 5.80726 6.08940 6.16882 6.32360 6.47450 6.56863 6.66871 6.68793 6.84684 6.91822 7.15267 7.18785 7.35682 7.67499 7.78425 8.21648 8.77566 9.41717 10.90452 Molecular weight = 240.04amu Principal moments of inertia in cm(-1) A = 0.022689 B = 0.010060 C = 0.009533 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1233.764946 B = 2782.551623 C = 2936.377314 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.871 5.871 2 C 0.071 3.929 3 Si 0.897 3.103 4 H -0.275 1.275 5 H -0.286 1.286 6 H -0.275 1.275 7 C -0.488 4.488 8 H 0.065 0.935 9 C 0.075 3.925 10 C 0.031 3.969 11 C -0.056 4.056 12 C -0.045 4.045 13 Cl -0.097 7.097 14 C -0.115 4.115 15 C -0.155 4.155 16 C 0.112 3.888 17 F -0.135 7.135 18 C -0.202 4.202 19 C -0.198 4.198 20 H 0.265 0.735 21 H 0.127 0.873 22 H 0.124 0.876 23 H 0.126 0.874 24 H 0.070 0.930 25 H 0.083 0.917 26 H 0.082 0.918 27 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.265 -4.822 2.323 6.844 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.506 5.506 2 C -0.133 4.133 3 Si 0.725 3.275 4 H -0.201 1.201 5 H -0.211 1.211 6 H -0.200 1.200 7 C -0.525 4.525 8 H 0.083 0.917 9 C 0.075 3.925 10 C 0.029 3.971 11 C -0.075 4.075 12 C -0.072 4.072 13 Cl -0.068 7.068 14 C -0.134 4.134 15 C -0.175 4.175 16 C 0.092 3.908 17 F -0.113 7.113 18 C -0.240 4.240 19 C -0.235 4.235 20 H 0.075 0.925 21 H 0.145 0.855 22 H 0.142 0.858 23 H 0.144 0.856 24 H 0.088 0.912 25 H 0.102 0.898 26 H 0.100 0.900 27 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -4.526 -4.682 2.273 6.897 hybrid contribution 0.408 1.104 -0.027 1.177 sum -4.119 -3.578 2.245 5.900 Atomic orbital electron populations 1.69901 1.05656 1.26957 1.48092 1.25003 0.95017 0.99307 0.93999 0.86554 0.79606 0.82581 0.78796 1.20078 1.21136 1.20034 1.20414 0.92422 0.87789 1.51860 0.91652 1.17705 0.90225 0.90793 0.93805 1.19064 0.94985 0.92383 0.90685 1.20483 0.89253 0.98128 0.99649 1.20692 0.86091 1.08029 0.92378 1.98300 1.33650 1.95965 1.78900 1.20413 0.97525 1.03358 0.92116 1.20774 0.91133 1.05692 0.99852 1.17435 0.80920 1.02109 0.90335 1.91444 1.46203 1.92797 1.80894 1.23117 1.01448 1.06451 0.92983 1.22926 0.98304 0.99624 1.02651 0.92454 0.85520 0.85806 0.85559 0.91186 0.89838 0.89972 0.91144 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -23.41 10.89 55.43 0.60 -22.81 15 2 C 0.07 1.89 5.37 -17.82 -0.10 1.79 15 3 Si 0.90 20.82 29.54 -169.99 -5.02 15.80 15 4 H -0.28 -6.31 7.11 56.52 0.40 -5.91 15 5 H -0.29 -6.61 7.11 56.52 0.40 -6.21 15 6 H -0.27 -6.39 7.11 56.52 0.40 -5.99 15 7 C -0.49 -12.92 8.77 -34.44 -0.30 -13.23 15 8 H 0.07 1.73 7.81 -52.49 -0.41 1.32 15 9 C 0.08 1.81 1.72 -156.82 -0.27 1.54 15 10 C 0.03 0.71 3.04 -104.56 -0.32 0.39 15 11 C -0.06 -1.20 8.36 -39.56 -0.33 -1.54 15 12 C -0.05 -0.87 6.32 -39.50 -0.25 -1.12 15 13 Cl -0.10 -1.61 28.95 -51.86 -1.50 -3.11 15 14 C -0.12 -2.06 9.83 -39.55 -0.39 -2.45 15 15 C -0.16 -2.96 10.03 -39.52 -0.40 -3.35 15 16 C 0.11 2.50 7.18 -39.42 -0.28 2.21 15 17 F -0.13 -3.16 16.60 2.25 0.04 -3.12 15 18 C -0.20 -4.33 9.43 -26.70 -0.25 -4.58 15 19 C -0.20 -4.17 9.94 -26.70 -0.27 -4.44 15 20 H 0.26 6.98 8.31 -40.82 -0.34 6.64 15 21 H 0.13 2.69 7.01 -52.49 -0.37 2.33 15 22 H 0.12 1.85 8.06 -52.49 -0.42 1.42 15 23 H 0.13 2.03 8.06 -52.49 -0.42 1.61 15 24 H 0.07 1.38 7.13 -51.93 -0.37 1.01 15 25 H 0.08 1.78 8.14 -51.93 -0.42 1.36 15 26 H 0.08 1.68 8.14 -51.93 -0.42 1.26 15 27 H 0.07 1.38 8.14 -51.93 -0.42 0.96 15 LS Contribution 258.08 15.07 3.89 3.89 Total: -1.00 -26.79 258.08 -7.54 -34.33 By element: Atomic # 1 Polarization: 2.19 SS G_CDS: -2.40 Total: -0.21 kcal Atomic # 6 Polarization: -21.62 SS G_CDS: -3.15 Total: -24.77 kcal Atomic # 7 Polarization: -23.41 SS G_CDS: 0.60 Total: -22.81 kcal Atomic # 9 Polarization: -3.16 SS G_CDS: 0.04 Total: -3.12 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -5.02 Total: 15.80 kcal Atomic # 17 Polarization: -1.61 SS G_CDS: -1.50 Total: -3.11 kcal Total LS contribution 3.89 Total: 3.89 kcal Total: -26.79 -7.54 -34.33 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259866793.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.416 kcal (2) G-P(sol) polarization free energy of solvation -26.793 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.623 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.539 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.332 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.916 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds