Wall clock time and date at job start Thu Apr 9 2020 15:11:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35661 * 116.99571 * 2 1 4 4 C 1.38406 * 120.19046 * 270.25111 * 3 2 1 5 5 C 1.50693 * 119.90869 * 359.97438 * 4 3 2 6 6 C 1.38281 * 120.18694 * 180.26353 * 4 3 2 7 7 C 1.50701 * 119.70928 * 179.76308 * 6 4 3 8 8 C 1.38952 * 120.57753 * 359.73805 * 6 4 3 9 9 Cl 1.73602 * 119.80829 * 179.97438 * 8 6 4 10 10 C 1.37568 * 120.38308 * 0.02562 * 8 6 4 11 11 C 1.40733 * 119.79957 * 359.97438 * 10 8 6 12 12 C 1.41149 * 120.28408 * 179.97438 * 11 10 8 13 13 H 1.07997 * 119.99832 * 205.34354 * 12 11 10 14 14 C 1.39926 * 119.99952 * 25.34666 * 12 11 10 15 15 N 1.30866 * 120.00145 * 26.46461 * 14 12 11 16 16 Si 1.86800 * 119.99780 * 206.46508 * 14 12 11 17 17 H 1.48504 * 109.47217 * 180.02562 * 16 14 12 18 18 H 1.48500 * 109.47201 * 299.99613 * 16 14 12 19 19 H 1.48500 * 109.47546 * 60.00104 * 16 14 12 20 20 H 1.09004 * 109.47215 * 60.00192 * 1 2 3 21 21 H 1.09007 * 109.46892 * 179.97438 * 1 2 3 22 22 H 1.09001 * 109.47525 * 299.99954 * 1 2 3 23 23 H 1.09010 * 109.47221 * 270.28187 * 5 4 3 24 24 H 1.08998 * 109.47436 * 30.27608 * 5 4 3 25 25 H 1.09000 * 109.47662 * 150.28540 * 5 4 3 26 26 H 1.08995 * 109.46833 * 269.97205 * 7 6 4 27 27 H 1.08996 * 109.47088 * 29.97805 * 7 6 4 28 28 H 1.08998 * 109.46707 * 149.97675 * 7 6 4 29 29 H 1.08008 * 120.10254 * 180.02562 * 10 8 6 30 30 H 0.97002 * 120.00146 * 5.88943 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0448 1.2088 0.0000 4 6 2.3561 1.8314 -1.1963 5 6 2.0105 1.1643 -2.5026 6 6 2.9886 3.0610 -1.1963 7 6 3.3273 3.7267 -2.5051 8 6 3.3142 3.6883 0.0001 9 17 4.1089 5.2316 -0.0232 10 6 3.0115 3.0931 1.2028 11 6 2.3678 1.8417 1.2214 12 6 2.0528 1.2215 2.4496 13 1 1.9508 0.1476 2.5016 14 6 1.8728 1.9980 3.5996 15 7 1.4825 3.2426 3.4943 16 14 2.1898 1.2580 5.2852 17 1 1.9280 2.2790 6.3313 18 1 1.2893 0.0955 5.4927 19 1 3.6032 0.8109 5.3719 20 1 -0.3634 0.5138 -0.8900 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3634 0.5138 0.8900 23 1 2.8411 0.5334 -2.8194 24 1 1.1181 0.5520 -2.3731 25 1 1.8225 1.9249 -3.2605 26 1 4.3230 3.4175 -2.8230 27 1 2.5977 3.4351 -3.2606 28 1 3.3063 4.8091 -2.3783 29 1 3.2663 3.5850 2.1300 30 1 1.2357 3.6019 2.6277 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259867251.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 15:11:25 Heat of formation + Delta-G solvation = -63.368060 kcal Electronic energy + Delta-G solvation = -15289.995947 eV Core-core repulsion = 12688.777068 eV Total energy + Delta-G solvation = -2601.218879 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 240.066 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.72265 -38.28815 -37.06762 -36.44389 -33.22578 -31.71536 -29.29899 -28.36396 -26.74221 -25.59332 -22.34844 -21.92405 -19.68097 -17.82665 -17.51741 -16.61887 -16.27566 -15.71870 -15.17361 -14.98662 -14.69143 -14.45640 -13.83547 -13.64604 -13.51584 -13.04408 -12.97883 -12.87599 -12.84583 -12.20914 -12.01740 -11.94345 -11.86330 -11.66016 -11.42456 -10.94701 -10.46475 -9.45782 -9.38184 -9.04250 -6.49839 0.50120 0.73273 1.36730 1.48116 1.58248 1.77666 2.27855 2.45652 3.04283 3.48793 4.11426 4.31496 4.37756 4.47530 4.56378 4.64836 4.75086 4.78481 4.88630 4.93237 5.04324 5.08577 5.18449 5.25166 5.38016 5.64615 5.78430 5.82244 6.00370 6.08885 6.44371 6.76165 7.09533 7.93827 Molecular weight = 240.07amu Principal moments of inertia in cm(-1) A = 0.020379 B = 0.011053 C = 0.007530 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1373.608320 B = 2532.616128 C = 3717.640716 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.337 6.337 3 C -0.042 4.042 4 C -0.059 4.059 5 C -0.099 4.099 6 C -0.206 4.206 7 C -0.088 4.088 8 C 0.005 3.995 9 Cl -0.091 7.091 10 C -0.226 4.226 11 C 0.061 3.939 12 C -0.526 4.526 13 H 0.075 0.925 14 C 0.006 3.994 15 N -0.805 5.805 16 Si 1.112 2.888 17 H -0.269 1.269 18 H -0.256 1.256 19 H -0.265 1.265 20 H 0.044 0.956 21 H 0.108 0.892 22 H 0.019 0.981 23 H 0.074 0.926 24 H 0.062 0.938 25 H 0.085 0.915 26 H 0.063 0.937 27 H 0.078 0.922 28 H 0.059 0.941 29 H 0.099 0.901 30 H 0.284 0.716 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.260 -1.506 -6.388 6.569 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.254 6.254 3 C -0.087 4.087 4 C -0.059 4.059 5 C -0.155 4.155 6 C -0.208 4.208 7 C -0.144 4.144 8 C -0.021 4.021 9 Cl -0.062 7.062 10 C -0.247 4.247 11 C 0.058 3.942 12 C -0.554 4.554 13 H 0.093 0.907 14 C -0.212 4.212 15 N -0.427 5.427 16 Si 0.929 3.071 17 H -0.194 1.194 18 H -0.180 1.180 19 H -0.189 1.189 20 H 0.063 0.937 21 H 0.126 0.874 22 H 0.038 0.962 23 H 0.093 0.907 24 H 0.081 0.919 25 H 0.104 0.896 26 H 0.082 0.918 27 H 0.097 0.903 28 H 0.078 0.922 29 H 0.117 0.883 30 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -0.107 -1.121 -4.801 4.931 hybrid contribution -0.169 0.199 -1.275 1.302 sum -0.276 -0.922 -6.076 6.152 Atomic orbital electron populations 1.22936 0.80657 1.03017 0.99339 1.85882 1.19576 1.25683 1.94233 1.18633 1.07286 0.91014 0.91773 1.19874 0.97648 0.93188 0.95232 1.20718 1.01756 1.00209 0.92814 1.19161 1.10615 0.96867 0.94194 1.20580 1.01520 0.99525 0.92806 1.20697 0.99593 0.86982 0.94857 1.98252 1.79199 1.29902 1.98873 1.20814 1.08580 0.99640 0.95618 1.18081 0.91056 0.91249 0.93850 1.20556 1.43960 0.96799 0.94053 0.90701 1.28441 0.90235 0.93644 1.08831 1.70599 1.26154 1.15468 1.30475 0.83070 0.78737 0.76119 0.69188 1.19391 1.17990 1.18939 0.93694 0.87408 0.96180 0.90728 0.91937 0.89643 0.91786 0.90294 0.92242 0.88329 0.90431 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 1.28 10.75 113.37 1.22 2.50 16 2 O -0.34 -15.25 8.93 -89.77 -0.80 -16.06 16 3 C -0.04 -2.06 5.72 23.06 0.13 -1.93 16 4 C -0.06 -2.47 5.89 -19.82 -0.12 -2.59 16 5 C -0.10 -3.15 9.36 71.23 0.67 -2.48 16 6 C -0.21 -8.56 5.90 -19.68 -0.12 -8.68 16 7 C -0.09 -2.79 9.18 71.24 0.65 -2.13 16 8 C 0.01 0.24 6.30 22.28 0.14 0.38 16 9 Cl -0.09 -3.56 27.24 -2.72 -0.07 -3.63 16 10 C -0.23 -11.74 7.74 22.72 0.18 -11.56 16 11 C 0.06 3.27 5.30 -21.20 -0.11 3.16 16 12 C -0.53 -28.26 8.64 23.39 0.20 -28.06 16 13 H 0.07 4.04 7.72 -2.91 -0.02 4.02 16 14 C 0.01 0.30 4.91 85.25 0.42 0.72 16 15 N -0.80 -43.10 12.32 21.83 0.27 -42.83 16 16 Si 1.11 43.10 30.01 68.60 2.06 45.15 16 17 H -0.27 -10.20 7.11 99.48 0.71 -9.50 16 18 H -0.26 -9.07 7.11 99.48 0.71 -8.36 16 19 H -0.26 -9.85 7.11 99.48 0.71 -9.14 16 20 H 0.04 1.48 7.23 -2.39 -0.02 1.47 16 21 H 0.11 3.16 8.14 -2.38 -0.02 3.14 16 22 H 0.02 0.81 8.14 -2.39 -0.02 0.79 16 23 H 0.07 2.22 8.14 -2.38 -0.02 2.20 16 24 H 0.06 1.94 6.29 -2.39 -0.02 1.92 16 25 H 0.08 2.27 5.91 -2.39 -0.01 2.25 16 26 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 27 H 0.08 2.12 5.91 -2.39 -0.01 2.10 16 28 H 0.06 1.84 6.87 -2.39 -0.02 1.82 16 29 H 0.10 5.41 6.53 -2.91 -0.02 5.39 16 30 H 0.28 15.85 6.78 -92.71 -0.63 15.23 16 Total: -1.00 -58.86 265.32 6.01 -52.85 By element: Atomic # 1 Polarization: 13.89 SS G_CDS: 1.30 Total: 15.19 kcal Atomic # 6 Polarization: -53.93 SS G_CDS: 3.26 Total: -50.67 kcal Atomic # 7 Polarization: -43.10 SS G_CDS: 0.27 Total: -42.83 kcal Atomic # 8 Polarization: -15.25 SS G_CDS: -0.80 Total: -16.06 kcal Atomic # 14 Polarization: 43.10 SS G_CDS: 2.06 Total: 45.15 kcal Atomic # 17 Polarization: -3.56 SS G_CDS: -0.07 Total: -3.63 kcal Total: -58.86 6.01 -52.85 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259867251.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.516 kcal (2) G-P(sol) polarization free energy of solvation -58.865 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.380 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.012 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.852 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.368 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds