Wall clock time and date at job start Thu Apr 9 2020 15:11:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38272 * 119.96096 * 2 1 4 4 C 1.38247 * 120.11973 * 180.27905 * 3 2 1 5 5 C 1.38254 * 120.03899 * 359.44327 * 4 3 2 6 6 Cl 1.73602 * 120.03511 * 180.25837 * 5 4 3 7 7 C 1.38813 * 119.92538 * 0.27522 * 5 4 3 8 8 O 1.35924 * 120.06049 * 179.97438 * 7 5 4 9 9 C 1.38155 * 119.95980 * 179.72128 * 2 1 3 10 10 C 1.50695 * 120.02096 * 0.02562 * 9 2 1 11 11 H 1.09000 * 109.47407 * 5.24194 * 10 9 2 12 12 C 1.53000 * 109.47180 * 245.23963 * 10 9 2 13 13 C 1.50708 * 109.47094 * 125.24306 * 10 9 2 14 14 H 1.08000 * 119.99775 * 359.97438 * 13 10 9 15 15 C 1.37871 * 119.99944 * 179.97438 * 13 10 9 16 16 N 1.31517 * 120.00426 * 359.97438 * 15 13 10 17 17 Si 1.86798 * 119.99819 * 179.97438 * 15 13 10 18 18 H 1.48499 * 109.47414 * 90.00037 * 17 15 13 19 19 H 1.48500 * 109.47167 * 210.00021 * 17 15 13 20 20 H 1.48503 * 109.47277 * 329.99567 * 17 15 13 21 21 H 1.08998 * 109.47148 * 264.44798 * 1 2 3 22 22 H 1.09000 * 109.47271 * 24.45153 * 1 2 3 23 23 H 1.09000 * 109.46980 * 144.45112 * 1 2 3 24 24 H 1.08006 * 119.93951 * 359.97438 * 3 2 1 25 25 H 1.07999 * 119.98270 * 179.72678 * 4 3 2 26 26 H 0.96700 * 113.99522 * 90.00219 * 8 7 5 27 27 H 1.09009 * 109.46745 * 300.00000 * 12 10 9 28 28 H 1.08998 * 109.46914 * 60.00077 * 12 10 9 29 29 H 1.08994 * 109.47554 * 180.02562 * 12 10 9 30 30 H 0.96996 * 120.00263 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1976 1.1979 0.0000 4 6 3.5800 1.2018 -0.0058 5 6 4.2755 0.0069 0.0000 6 17 6.0115 0.0119 -0.0006 7 6 3.5840 -1.1968 0.0059 8 8 4.2650 -2.3731 0.0110 9 6 2.1970 -1.1969 0.0058 10 6 1.4431 -2.5017 0.0116 11 1 0.3752 -2.3048 -0.0836 12 6 1.7105 -3.2395 1.3250 13 6 1.9021 -3.3523 -1.1448 14 1 2.6633 -2.9845 -1.8168 15 6 1.3503 -4.5998 -1.3446 16 7 0.4237 -5.0479 -0.5259 17 14 1.9188 -5.6537 -2.7783 18 1 3.0600 -6.5010 -2.3480 19 1 0.8008 -6.5210 -3.2291 20 1 2.3475 -4.7771 -3.8977 21 1 -0.3633 -0.0994 1.0228 22 1 -0.3634 0.9355 -0.4254 23 1 -0.3633 -0.8361 -0.5975 24 1 1.6559 2.1324 -0.0004 25 1 4.1171 2.1387 -0.0103 26 1 4.4623 -2.7094 0.8959 27 1 2.7784 -3.4364 1.4201 28 1 1.3785 -2.6243 2.1613 29 1 1.1656 -4.1834 1.3291 30 1 0.0357 -5.9258 -0.6664 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259892706.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 15:11:28 Heat of formation + Delta-G solvation = -36.587536 kcal Electronic energy + Delta-G solvation = -15318.107743 eV Core-core repulsion = 12718.050155 eV Total energy + Delta-G solvation = -2600.057588 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 240.066 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.57942 -36.23680 -36.15478 -34.26923 -31.93711 -30.56954 -28.24075 -26.24678 -25.10953 -22.71117 -21.11211 -19.70489 -17.33807 -16.51052 -16.03514 -15.13531 -14.66341 -14.32009 -13.54575 -13.11795 -12.89018 -12.66205 -12.30524 -12.21850 -11.61129 -11.39197 -11.27622 -10.89026 -10.85763 -10.66757 -10.56212 -10.29987 -10.26474 -9.95736 -9.33170 -8.90002 -8.30607 -7.94763 -7.85298 -5.96553 -3.98999 1.60334 1.81713 2.56074 3.35258 3.41249 3.46975 4.04409 4.50093 4.78586 5.21551 5.35493 5.43986 5.61484 5.79120 5.97371 6.08060 6.11391 6.45726 6.55118 6.57526 6.70936 6.81892 6.90604 7.06710 7.18456 7.34150 7.71558 7.89859 8.09398 8.33333 8.45142 9.02961 9.63752 11.09757 Molecular weight = 240.07amu Principal moments of inertia in cm(-1) A = 0.024086 B = 0.009325 C = 0.007597 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1162.228853 B = 3002.019327 C = 3685.018864 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.081 4.081 3 C -0.125 4.125 4 C -0.123 4.123 5 C -0.074 4.074 6 Cl -0.083 7.083 7 C 0.130 3.870 8 O -0.463 6.463 9 C -0.050 4.050 10 C 0.073 3.927 11 H 0.046 0.954 12 C -0.133 4.133 13 C -0.485 4.485 14 H 0.060 0.940 15 C 0.058 3.942 16 N -0.897 5.897 17 Si 0.893 3.107 18 H -0.282 1.282 19 H -0.289 1.289 20 H -0.275 1.275 21 H 0.066 0.934 22 H 0.057 0.943 23 H 0.083 0.917 24 H 0.122 0.878 25 H 0.124 0.876 26 H 0.378 0.622 27 H 0.027 0.973 28 H 0.006 0.994 29 H 0.089 0.911 30 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.632 9.844 3.531 11.071 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.081 4.081 3 C -0.143 4.143 4 C -0.141 4.141 5 C -0.101 4.101 6 Cl -0.054 7.054 7 C 0.084 3.916 8 O -0.273 6.273 9 C -0.051 4.051 10 C 0.055 3.945 11 H 0.064 0.936 12 C -0.191 4.191 13 C -0.523 4.523 14 H 0.078 0.922 15 C -0.142 4.142 16 N -0.537 5.537 17 Si 0.721 3.279 18 H -0.208 1.208 19 H -0.215 1.215 20 H -0.200 1.200 21 H 0.085 0.915 22 H 0.076 0.924 23 H 0.102 0.898 24 H 0.140 0.860 25 H 0.142 0.858 26 H 0.234 0.766 27 H 0.046 0.954 28 H 0.025 0.975 29 H 0.108 0.892 30 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 3.646 9.729 2.938 10.797 hybrid contribution 0.645 -0.636 -0.286 0.950 sum 4.291 9.092 2.652 10.398 Atomic orbital electron populations 1.20831 0.91070 1.02669 1.02416 1.19859 0.96513 0.92132 0.99610 1.20853 0.93063 0.97609 1.02777 1.20664 0.94116 0.95897 1.03465 1.21450 0.83750 0.95092 1.09766 1.98314 1.10933 1.98954 1.97184 1.18037 0.89564 0.84068 0.99957 1.84974 1.75223 1.35106 1.31948 1.20948 0.92333 0.97567 0.94251 1.17951 0.95163 0.86454 0.94967 0.93580 1.21779 0.99683 1.02519 0.95112 1.21069 1.20842 1.00177 1.10207 0.92190 1.24903 0.95088 0.97731 0.96438 1.69868 1.27620 1.18983 1.37252 0.86570 0.78060 0.80313 0.82914 1.20773 1.21517 1.20038 0.91486 0.92424 0.89814 0.85960 0.85792 0.76591 0.95362 0.97486 0.89226 0.93137 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.80 9.27 36.01 0.33 -1.47 16 2 C -0.08 -1.46 5.88 -104.64 -0.62 -2.08 16 3 C -0.12 -1.94 9.67 -39.57 -0.38 -2.32 16 4 C -0.12 -1.93 9.83 -39.57 -0.39 -2.32 16 5 C -0.07 -1.31 6.33 -39.36 -0.25 -1.56 16 6 Cl -0.08 -1.32 28.50 -51.86 -1.48 -2.80 16 7 C 0.13 2.61 6.13 -39.20 -0.24 2.37 16 8 O -0.46 -9.45 10.29 -19.50 -0.20 -9.66 16 9 C -0.05 -1.05 4.76 -104.48 -0.50 -1.55 16 10 C 0.07 1.74 2.19 -92.92 -0.20 1.53 16 11 H 0.05 1.15 5.54 -51.93 -0.29 0.87 16 12 C -0.13 -3.04 8.80 37.16 0.33 -2.72 16 13 C -0.48 -13.05 7.32 -34.44 -0.25 -13.30 16 14 H 0.06 1.70 7.14 -52.49 -0.37 1.32 16 15 C 0.06 1.59 5.30 -17.82 -0.09 1.50 16 16 N -0.90 -25.00 11.32 55.43 0.63 -24.38 16 17 Si 0.89 21.70 29.54 -169.99 -5.02 16.68 16 18 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 19 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 20 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 21 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 22 H 0.06 0.75 8.05 -51.93 -0.42 0.34 16 23 H 0.08 1.50 6.34 -51.93 -0.33 1.18 16 24 H 0.12 1.52 8.06 -52.48 -0.42 1.09 16 25 H 0.12 1.62 8.06 -52.49 -0.42 1.20 16 26 H 0.38 6.36 7.73 45.56 0.35 6.71 16 27 H 0.03 0.60 5.81 -51.92 -0.30 0.30 16 28 H 0.01 0.13 8.14 -51.93 -0.42 -0.29 16 29 H 0.09 2.28 6.07 -51.93 -0.32 1.96 16 30 H 0.26 6.95 8.31 -40.82 -0.34 6.61 16 LS Contribution 263.84 15.07 3.98 3.98 Total: -1.00 -28.70 263.84 -6.86 -35.56 By element: Atomic # 1 Polarization: 5.02 SS G_CDS: -2.50 Total: 2.52 kcal Atomic # 6 Polarization: -19.64 SS G_CDS: -2.26 Total: -21.91 kcal Atomic # 7 Polarization: -25.00 SS G_CDS: 0.63 Total: -24.38 kcal Atomic # 8 Polarization: -9.45 SS G_CDS: -0.20 Total: -9.66 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.68 kcal Atomic # 17 Polarization: -1.32 SS G_CDS: -1.48 Total: -2.80 kcal Total LS contribution 3.98 Total: 3.98 kcal Total: -28.70 -6.86 -35.56 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259892706.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.031 kcal (2) G-P(sol) polarization free energy of solvation -28.698 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.729 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.859 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.557 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.588 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds