Wall clock time and date at job start Thu Apr 9 2020 15:11:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38269 * 119.96150 * 2 1 4 4 C 1.38250 * 120.11762 * 180.02562 * 3 2 1 5 5 C 1.38252 * 120.04340 * 359.95683 * 4 3 2 6 6 Cl 1.73605 * 120.03979 * 180.02562 * 5 4 3 7 7 C 1.38819 * 119.92392 * 359.76874 * 5 4 3 8 8 O 1.35923 * 120.06188 * 180.25051 * 7 5 4 9 9 C 1.38157 * 119.95880 * 179.97438 * 2 1 3 10 10 C 1.50700 * 120.02225 * 359.97310 * 9 2 1 11 11 H 1.09004 * 109.46901 * 354.21889 * 10 9 2 12 12 C 1.53002 * 109.46977 * 114.21457 * 10 9 2 13 13 C 1.50694 * 109.47278 * 234.21964 * 10 9 2 14 14 H 1.08008 * 120.00116 * 359.97438 * 13 10 9 15 15 C 1.37879 * 120.00068 * 180.02562 * 13 10 9 16 16 N 1.31511 * 119.99971 * 359.97438 * 15 13 10 17 17 Si 1.86804 * 119.99868 * 179.97438 * 15 13 10 18 18 H 1.48493 * 109.47309 * 89.99803 * 17 15 13 19 19 H 1.48495 * 109.46761 * 210.00084 * 17 15 13 20 20 H 1.48506 * 109.47227 * 329.99455 * 17 15 13 21 21 H 1.08997 * 109.47101 * 264.32222 * 1 2 3 22 22 H 1.09000 * 109.46925 * 24.31960 * 1 2 3 23 23 H 1.08999 * 109.46921 * 144.31808 * 1 2 3 24 24 H 1.08000 * 119.94397 * 0.02562 * 3 2 1 25 25 H 1.08005 * 119.97986 * 179.97438 * 4 3 2 26 26 H 0.96694 * 114.00028 * 270.25530 * 8 7 5 27 27 H 1.09004 * 109.46952 * 60.00463 * 12 10 9 28 28 H 1.09003 * 109.46715 * 179.97438 * 12 10 9 29 29 H 1.08992 * 109.47119 * 300.00320 * 12 10 9 30 30 H 0.97002 * 120.00068 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1976 1.1979 0.0000 4 6 3.5801 1.2017 -0.0005 5 6 4.2755 0.0068 -0.0002 6 17 6.0116 0.0116 -0.0002 7 6 3.5840 -1.1969 0.0056 8 8 4.2649 -2.3733 0.0111 9 6 2.1970 -1.1970 0.0005 10 6 1.4431 -2.5018 0.0017 11 1 0.3760 -2.3048 0.1056 12 6 1.6997 -3.2403 -1.3135 13 6 1.9115 -3.3516 1.1547 14 1 2.6788 -2.9838 1.8199 15 6 1.3613 -4.5991 1.3599 16 7 0.4274 -5.0472 0.5496 17 14 1.9425 -5.6527 2.7887 18 1 1.1134 -5.3637 3.9863 19 1 1.8116 -7.0879 2.4307 20 1 3.3646 -5.3442 3.0850 21 1 -0.3633 -0.1017 1.0226 22 1 -0.3633 0.9365 -0.4232 23 1 -0.3633 -0.8347 -0.5994 24 1 1.6561 2.1323 0.0004 25 1 4.1172 2.1387 -0.0010 26 1 4.4653 -2.7159 -0.8706 27 1 2.7667 -3.4373 -1.4173 28 1 1.1547 -4.1843 -1.3124 29 1 1.3609 -2.6256 -2.1474 30 1 0.0400 -5.9247 0.6941 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259892707.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 15:11:29 Heat of formation + Delta-G solvation = -37.073670 kcal Electronic energy + Delta-G solvation = -15319.082782 eV Core-core repulsion = 12719.004114 eV Total energy + Delta-G solvation = -2600.078669 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 240.066 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.57788 -36.23472 -36.15141 -34.26824 -31.94049 -30.56563 -28.23649 -26.25686 -25.10182 -22.70507 -21.10888 -19.70193 -17.33608 -16.52965 -16.02764 -15.12801 -14.66069 -14.31112 -13.52373 -13.15663 -12.90987 -12.58025 -12.27245 -12.22041 -11.63392 -11.40434 -11.24662 -10.96959 -10.86602 -10.66962 -10.55594 -10.29698 -10.24914 -9.95975 -9.32654 -8.89483 -8.30275 -7.95249 -7.85273 -5.96368 -3.98548 1.60367 1.81649 2.56100 3.34632 3.41134 3.48476 4.04413 4.50380 4.79055 5.21473 5.35842 5.43751 5.61372 5.77880 5.96967 6.08317 6.14064 6.45920 6.54460 6.56146 6.70165 6.81911 6.91074 7.06173 7.18633 7.32968 7.71284 7.89962 8.09480 8.33939 8.45652 9.03393 9.64067 11.10072 Molecular weight = 240.07amu Principal moments of inertia in cm(-1) A = 0.024062 B = 0.009342 C = 0.007595 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1163.366162 B = 2996.504734 C = 3685.851369 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.081 4.081 3 C -0.125 4.125 4 C -0.122 4.122 5 C -0.074 4.074 6 Cl -0.083 7.083 7 C 0.130 3.870 8 O -0.463 6.463 9 C -0.051 4.051 10 C 0.073 3.927 11 H 0.046 0.954 12 C -0.134 4.134 13 C -0.484 4.484 14 H 0.060 0.940 15 C 0.058 3.942 16 N -0.897 5.897 17 Si 0.891 3.109 18 H -0.283 1.283 19 H -0.288 1.288 20 H -0.273 1.273 21 H 0.071 0.929 22 H 0.056 0.944 23 H 0.077 0.923 24 H 0.123 0.877 25 H 0.124 0.876 26 H 0.378 0.622 27 H 0.027 0.973 28 H 0.089 0.911 29 H 0.006 0.994 30 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.654 9.852 -3.569 11.097 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.081 4.081 3 C -0.143 4.143 4 C -0.141 4.141 5 C -0.101 4.101 6 Cl -0.054 7.054 7 C 0.084 3.916 8 O -0.272 6.272 9 C -0.051 4.051 10 C 0.055 3.945 11 H 0.063 0.937 12 C -0.192 4.192 13 C -0.522 4.522 14 H 0.078 0.922 15 C -0.142 4.142 16 N -0.537 5.537 17 Si 0.720 3.280 18 H -0.209 1.209 19 H -0.214 1.214 20 H -0.198 1.198 21 H 0.090 0.910 22 H 0.075 0.925 23 H 0.096 0.904 24 H 0.140 0.860 25 H 0.142 0.858 26 H 0.234 0.766 27 H 0.046 0.954 28 H 0.108 0.892 29 H 0.025 0.975 30 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 3.674 9.736 -2.983 10.825 hybrid contribution 0.625 -0.639 0.325 0.951 sum 4.299 9.096 -2.657 10.406 Atomic orbital electron populations 1.20798 0.91048 1.02069 1.02820 1.19865 0.96506 0.92145 0.99596 1.20847 0.93061 0.97600 1.02805 1.20666 0.94114 0.95898 1.03449 1.21458 0.83752 0.95116 1.09757 1.98314 1.10933 1.98953 1.97185 1.18045 0.89567 0.84101 0.99875 1.84980 1.75192 1.34994 1.32026 1.20957 0.92345 0.97560 0.94278 1.17932 0.95150 0.86443 0.94961 0.93653 1.21786 0.99682 1.02546 0.95154 1.21065 1.20425 1.00150 1.10571 0.92155 1.24903 0.95119 0.97726 0.96417 1.69868 1.27400 1.19076 1.37392 0.86587 0.79353 0.79423 0.82661 1.20946 1.21434 1.19789 0.91025 0.92517 0.90439 0.85954 0.85792 0.76616 0.95378 0.89224 0.97464 0.93148 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.76 9.14 36.01 0.33 -1.43 16 2 C -0.08 -1.46 5.88 -104.64 -0.62 -2.07 16 3 C -0.12 -1.94 9.67 -39.57 -0.38 -2.32 16 4 C -0.12 -1.92 9.83 -39.57 -0.39 -2.31 16 5 C -0.07 -1.31 6.33 -39.36 -0.25 -1.56 16 6 Cl -0.08 -1.32 28.51 -51.86 -1.48 -2.80 16 7 C 0.13 2.62 6.13 -39.19 -0.24 2.38 16 8 O -0.46 -9.48 10.25 -19.50 -0.20 -9.68 16 9 C -0.05 -1.06 4.76 -104.48 -0.50 -1.56 16 10 C 0.07 1.75 2.10 -92.93 -0.20 1.55 16 11 H 0.05 1.14 5.72 -51.93 -0.30 0.84 16 12 C -0.13 -3.06 8.81 37.16 0.33 -2.73 16 13 C -0.48 -13.03 7.30 -34.44 -0.25 -13.28 16 14 H 0.06 1.71 7.08 -52.48 -0.37 1.34 16 15 C 0.06 1.59 5.30 -17.82 -0.09 1.50 16 16 N -0.90 -25.04 11.32 55.43 0.63 -24.41 16 17 Si 0.89 21.68 29.54 -169.99 -5.02 16.66 16 18 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 19 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 20 H -0.27 -6.71 7.11 56.52 0.40 -6.31 16 21 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 22 H 0.06 0.72 8.05 -51.93 -0.42 0.30 16 23 H 0.08 1.32 6.54 -51.93 -0.34 0.98 16 24 H 0.12 1.52 8.06 -52.49 -0.42 1.09 16 25 H 0.12 1.62 8.06 -52.48 -0.42 1.19 16 26 H 0.38 6.37 7.76 45.56 0.35 6.72 16 27 H 0.03 0.59 5.89 -51.93 -0.31 0.29 16 28 H 0.09 2.28 6.07 -51.93 -0.32 1.96 16 29 H 0.01 0.13 8.14 -51.93 -0.42 -0.29 16 30 H 0.26 6.96 8.31 -40.82 -0.34 6.62 16 LS Contribution 264.01 15.07 3.98 3.98 Total: -1.00 -28.76 264.01 -6.87 -35.64 By element: Atomic # 1 Polarization: 4.98 SS G_CDS: -2.52 Total: 2.46 kcal Atomic # 6 Polarization: -19.59 SS G_CDS: -2.26 Total: -21.85 kcal Atomic # 7 Polarization: -25.04 SS G_CDS: 0.63 Total: -24.41 kcal Atomic # 8 Polarization: -9.48 SS G_CDS: -0.20 Total: -9.68 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.66 kcal Atomic # 17 Polarization: -1.32 SS G_CDS: -1.48 Total: -2.80 kcal Total LS contribution 3.98 Total: 3.98 kcal Total: -28.76 -6.87 -35.64 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259892707.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.438 kcal (2) G-P(sol) polarization free energy of solvation -28.765 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.202 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.871 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.636 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.074 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds