Wall clock time and date at job start Thu Apr 9 2020 15:11:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30921 * 1 3 3 Si 1.86804 * 119.99925 * 2 1 4 4 H 1.48499 * 109.47168 * 239.99741 * 3 2 1 5 5 H 1.48501 * 109.46813 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46943 * 119.99938 * 3 2 1 7 7 C 1.39827 * 120.00180 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99895 * 162.94901 * 7 2 1 9 9 C 1.41059 * 120.00211 * 342.95198 * 7 2 1 10 10 C 1.40296 * 120.11262 * 154.61526 * 9 7 2 11 11 C 1.38045 * 120.95113 * 180.30168 * 10 9 7 12 12 C 1.38878 * 118.48809 * 359.43341 * 11 10 9 13 13 C 1.40420 * 120.90119 * 0.58939 * 12 11 10 14 14 Cl 1.73598 * 119.62672 * 179.69858 * 13 12 11 15 15 C 1.36058 * 120.74453 * 359.67918 * 13 12 11 16 16 S 1.76811 * 110.04644 * 180.35884 * 12 11 10 17 17 C 1.81487 * 97.03287 * 359.61540 * 16 12 11 18 18 C 1.50261 * 126.09168 * 179.70088 * 11 10 9 19 19 H 0.97006 * 120.00576 * 359.97438 * 1 2 3 20 20 H 1.08002 * 119.52368 * 0.02562 * 10 9 7 21 21 H 1.08002 * 120.43276 * 180.02562 * 15 13 12 22 22 H 1.09005 * 110.75054 * 241.38020 * 17 16 12 23 23 H 1.09002 * 109.97034 * 119.24089 * 17 16 12 24 24 H 1.08993 * 108.90297 * 300.79043 * 18 11 10 25 25 H 1.08999 * 108.90583 * 59.24798 * 18 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3092 0.0000 0.0000 3 14 2.2432 1.6178 0.0000 4 1 3.0970 1.6964 -1.2125 5 1 1.2781 2.7464 0.0006 6 1 3.0969 1.6964 1.2125 7 6 2.0084 -1.2109 0.0005 8 1 3.0528 -1.2315 -0.2737 9 6 1.3497 -2.4056 0.3592 10 6 1.8176 -3.6384 -0.1197 11 6 1.1826 -4.8175 0.2153 12 6 0.0736 -4.7589 1.0492 13 6 -0.4012 -3.5288 1.5323 14 17 -1.7951 -3.4933 2.5665 15 6 0.2191 -2.3646 1.1992 16 16 -0.5537 -6.3864 1.3388 17 6 0.6582 -7.2758 0.3220 18 6 1.5789 -6.1952 -0.2349 19 1 -0.4851 0.8400 0.0004 20 1 2.6845 -3.6651 -0.7633 21 1 -0.1501 -1.4213 1.5740 22 1 0.1639 -7.8078 -0.4910 23 1 1.2235 -7.9727 0.9408 24 1 1.5495 -6.2329 -1.3238 25 1 2.5982 -6.3951 0.0953 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259896984.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 15:11:32 Heat of formation + Delta-G solvation = -5.303707 kcal Electronic energy + Delta-G solvation = -12492.899109 eV Core-core repulsion = 10201.117866 eV Total energy + Delta-G solvation = -2291.781243 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 240.007 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -38.17945 -35.54012 -34.74379 -32.78831 -29.83178 -28.57818 -25.61780 -23.45096 -21.20057 -20.31899 -17.35823 -16.46238 -15.47209 -14.90584 -14.47674 -14.11766 -13.81856 -12.90931 -12.45803 -12.40055 -12.09195 -11.55186 -11.48176 -11.23839 -11.05596 -10.94498 -10.43419 -10.21701 -10.00533 -9.93408 -9.43349 -9.35245 -8.42715 -7.53970 -7.00119 -6.63303 -4.54722 2.40361 2.41686 2.60144 2.96487 2.98076 3.01610 3.03153 3.43663 3.77566 4.29267 5.13663 5.17622 5.36670 5.43747 5.92115 6.05672 6.14051 6.43967 6.61522 6.79721 6.98513 7.12639 7.28214 7.49758 7.68442 7.89407 8.26646 8.59005 8.61235 9.95171 Molecular weight = 240.01amu Principal moments of inertia in cm(-1) A = 0.032254 B = 0.008392 C = 0.006808 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 867.911237 B = 3335.702220 C = 4111.891689 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.781 5.781 2 C 0.074 3.926 3 Si 0.915 3.085 4 H -0.263 1.263 5 H -0.276 1.276 6 H -0.261 1.261 7 C -0.448 4.448 8 H 0.085 0.915 9 C 0.123 3.877 10 C -0.208 4.208 11 C -0.058 4.058 12 C -0.203 4.203 13 C 0.032 3.968 14 Cl -0.112 7.112 15 C -0.141 4.141 16 S -0.163 6.163 17 C -0.092 4.092 18 C -0.078 4.078 19 H 0.287 0.713 20 H 0.099 0.901 21 H 0.137 0.863 22 H 0.090 0.910 23 H 0.089 0.911 24 H 0.078 0.922 25 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.645 -4.894 0.178 5.166 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.405 5.405 2 C -0.146 4.146 3 Si 0.738 3.262 4 H -0.188 1.188 5 H -0.201 1.201 6 H -0.185 1.185 7 C -0.477 4.477 8 H 0.103 0.897 9 C 0.119 3.881 10 C -0.229 4.229 11 C -0.063 4.063 12 C -0.316 4.316 13 C 0.001 3.999 14 Cl -0.084 7.084 15 C -0.162 4.162 16 S 0.074 5.926 17 C -0.241 4.241 18 C -0.116 4.116 19 H 0.098 0.902 20 H 0.118 0.882 21 H 0.155 0.845 22 H 0.108 0.892 23 H 0.108 0.892 24 H 0.096 0.904 25 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 0.335 -5.259 0.922 5.350 hybrid contribution 1.176 1.281 -0.733 1.887 sum 1.511 -3.978 0.189 4.260 Atomic orbital electron populations 1.69825 1.07664 1.30133 1.32902 1.25999 0.94839 1.01750 0.92031 0.86249 0.80111 0.79610 0.80202 1.18778 1.20083 1.18547 1.19509 0.98075 0.90819 1.39285 0.89710 1.17295 0.90382 0.92180 0.88259 1.20449 1.04168 0.91060 1.07251 1.19673 0.95241 0.93870 0.97565 1.20923 1.04384 0.93061 1.13208 1.19811 0.90096 0.93058 0.96923 1.98268 1.43564 1.98883 1.67664 1.20951 0.99018 0.95447 1.00824 1.85081 1.42763 1.00829 1.63910 1.23508 0.99040 0.99946 1.01558 1.20285 0.99436 0.90578 1.01309 0.90171 0.88242 0.84524 0.89191 0.89234 0.90393 0.90406 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -19.18 10.96 55.54 0.61 -18.57 15 2 C 0.07 1.74 5.15 -17.35 -0.09 1.65 15 3 Si 0.91 17.51 29.59 -169.99 -5.03 12.48 15 4 H -0.26 -4.96 7.11 56.52 0.40 -4.56 15 5 H -0.28 -5.18 7.11 56.52 0.40 -4.78 15 6 H -0.26 -4.97 7.11 56.52 0.40 -4.57 15 7 C -0.45 -11.09 9.02 -37.92 -0.34 -11.43 15 8 H 0.08 1.98 7.90 -52.49 -0.41 1.56 15 9 C 0.12 3.12 5.55 -107.04 -0.59 2.52 15 10 C -0.21 -4.84 9.64 -38.88 -0.37 -5.22 15 11 C -0.06 -1.27 5.95 -104.67 -0.62 -1.89 15 12 C -0.20 -4.66 6.34 -38.52 -0.24 -4.91 15 13 C 0.03 0.77 6.30 -39.54 -0.25 0.52 15 14 Cl -0.11 -2.43 28.60 -51.86 -1.48 -3.91 15 15 C -0.14 -3.58 8.38 -39.36 -0.33 -3.91 15 16 S -0.16 -3.20 22.79 -107.50 -2.45 -5.65 15 17 C -0.09 -1.42 7.28 36.90 0.27 -1.15 15 18 C -0.08 -1.32 6.26 -28.35 -0.18 -1.50 15 19 H 0.29 6.42 8.30 -40.82 -0.34 6.08 15 20 H 0.10 2.13 8.06 -52.49 -0.42 1.71 15 21 H 0.14 3.56 6.21 -52.49 -0.33 3.24 15 22 H 0.09 1.20 8.14 -51.93 -0.42 0.78 15 23 H 0.09 1.18 8.14 -51.93 -0.42 0.76 15 24 H 0.08 1.20 8.14 -51.93 -0.42 0.78 15 25 H 0.08 1.17 8.14 -51.93 -0.42 0.75 15 LS Contribution 246.16 15.07 3.71 3.71 Total: -1.00 -26.11 246.16 -9.39 -35.50 By element: Atomic # 1 Polarization: 3.73 SS G_CDS: -1.99 Total: 1.74 kcal Atomic # 6 Polarization: -22.54 SS G_CDS: -2.75 Total: -25.30 kcal Atomic # 7 Polarization: -19.18 SS G_CDS: 0.61 Total: -18.57 kcal Atomic # 14 Polarization: 17.51 SS G_CDS: -5.03 Total: 12.48 kcal Atomic # 16 Polarization: -3.20 SS G_CDS: -2.45 Total: -5.65 kcal Atomic # 17 Polarization: -2.43 SS G_CDS: -1.48 Total: -3.91 kcal Total LS contribution 3.71 Total: 3.71 kcal Total: -26.11 -9.39 -35.50 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259896984.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.198 kcal (2) G-P(sol) polarization free energy of solvation -26.113 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.085 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.389 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.501 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.304 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds