Wall clock time and date at job start Thu Apr 9 2020 15:11:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30921 * 1 3 3 Si 1.86804 * 119.99925 * 2 1 4 4 H 1.48499 * 109.47168 * 239.99741 * 3 2 1 5 5 H 1.48501 * 109.46813 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46943 * 119.99938 * 3 2 1 7 7 C 1.39827 * 120.00180 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99895 * 162.94901 * 7 2 1 9 9 C 1.41059 * 120.00211 * 342.95198 * 7 2 1 10 10 C 1.40296 * 120.11262 * 154.61526 * 9 7 2 11 11 C 1.38045 * 120.95113 * 180.30168 * 10 9 7 12 12 C 1.38878 * 118.48809 * 359.43341 * 11 10 9 13 13 C 1.40420 * 120.90119 * 0.58939 * 12 11 10 14 14 Cl 1.73598 * 119.62672 * 179.69858 * 13 12 11 15 15 C 1.36058 * 120.74453 * 359.67918 * 13 12 11 16 16 S 1.76811 * 110.04644 * 180.35884 * 12 11 10 17 17 C 1.81487 * 97.03287 * 359.61540 * 16 12 11 18 18 C 1.50261 * 126.09168 * 179.70088 * 11 10 9 19 19 H 0.97006 * 120.00576 * 359.97438 * 1 2 3 20 20 H 1.08002 * 119.52368 * 0.02562 * 10 9 7 21 21 H 1.08002 * 120.43276 * 180.02562 * 15 13 12 22 22 H 1.09005 * 110.75054 * 241.38020 * 17 16 12 23 23 H 1.09002 * 109.97034 * 119.24089 * 17 16 12 24 24 H 1.08993 * 108.90297 * 300.79043 * 18 11 10 25 25 H 1.08999 * 108.90583 * 59.24798 * 18 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3092 0.0000 0.0000 3 14 2.2432 1.6178 0.0000 4 1 3.0970 1.6964 -1.2125 5 1 1.2781 2.7464 0.0006 6 1 3.0969 1.6964 1.2125 7 6 2.0084 -1.2109 0.0005 8 1 3.0528 -1.2315 -0.2737 9 6 1.3497 -2.4056 0.3592 10 6 1.8176 -3.6384 -0.1197 11 6 1.1826 -4.8175 0.2153 12 6 0.0736 -4.7589 1.0492 13 6 -0.4012 -3.5288 1.5323 14 17 -1.7951 -3.4933 2.5665 15 6 0.2191 -2.3646 1.1992 16 16 -0.5537 -6.3864 1.3388 17 6 0.6582 -7.2758 0.3220 18 6 1.5789 -6.1952 -0.2349 19 1 -0.4851 0.8400 0.0004 20 1 2.6845 -3.6651 -0.7633 21 1 -0.1501 -1.4213 1.5740 22 1 0.1639 -7.8078 -0.4910 23 1 1.2235 -7.9727 0.9408 24 1 1.5495 -6.2329 -1.3238 25 1 2.5982 -6.3951 0.0953 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259896984.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 15:11:32 Heat of formation + Delta-G solvation = -17.500407 kcal Electronic energy + Delta-G solvation = -12493.427998 eV Core-core repulsion = 10201.117866 eV Total energy + Delta-G solvation = -2292.310132 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 240.007 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.90895 -37.29466 -36.40040 -34.41564 -31.63452 -30.19067 -27.42045 -24.89287 -22.97835 -21.99710 -19.12573 -18.13092 -17.17784 -16.20586 -16.15946 -15.79479 -15.45862 -14.59743 -14.12856 -13.99296 -13.59498 -13.15037 -12.94266 -12.77627 -12.64794 -12.55838 -12.07977 -11.86628 -11.71141 -11.67188 -11.15743 -10.91390 -10.17417 -9.32353 -8.75759 -8.25515 -6.38795 0.62496 0.79715 0.96359 1.35211 1.39348 1.48106 1.52626 1.75150 2.17242 2.53264 3.45853 3.85540 4.01660 4.10205 4.59486 4.66867 4.79880 4.87205 4.93320 5.05941 5.20815 5.31329 5.51509 5.66592 5.89271 6.07095 6.42868 6.77150 6.77985 8.21816 Molecular weight = 240.01amu Principal moments of inertia in cm(-1) A = 0.032254 B = 0.008392 C = 0.006808 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 867.911237 B = 3335.702220 C = 4111.891689 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.816 5.816 2 C 0.035 3.965 3 Si 0.987 3.013 4 H -0.255 1.255 5 H -0.269 1.269 6 H -0.259 1.259 7 C -0.479 4.479 8 H 0.090 0.910 9 C 0.095 3.905 10 C -0.222 4.222 11 C -0.060 4.060 12 C -0.221 4.221 13 C 0.016 3.984 14 Cl -0.099 7.099 15 C -0.165 4.165 16 S -0.181 6.181 17 C -0.078 4.078 18 C -0.079 4.079 19 H 0.293 0.707 20 H 0.113 0.887 21 H 0.119 0.881 22 H 0.117 0.883 23 H 0.119 0.881 24 H 0.098 0.902 25 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.649 -6.194 -0.428 6.750 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.441 5.441 2 C -0.181 4.181 3 Si 0.807 3.193 4 H -0.179 1.179 5 H -0.194 1.194 6 H -0.183 1.183 7 C -0.507 4.507 8 H 0.108 0.892 9 C 0.091 3.909 10 C -0.243 4.243 11 C -0.066 4.066 12 C -0.334 4.334 13 C -0.015 4.015 14 Cl -0.071 7.071 15 C -0.187 4.187 16 S 0.056 5.944 17 C -0.226 4.226 18 C -0.116 4.116 19 H 0.104 0.896 20 H 0.131 0.869 21 H 0.137 0.863 22 H 0.136 0.864 23 H 0.138 0.862 24 H 0.116 0.884 25 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 1.332 -6.584 0.316 6.725 hybrid contribution 0.817 1.535 -0.535 1.819 sum 2.150 -5.049 -0.218 5.492 Atomic orbital electron populations 1.69890 1.09210 1.31300 1.33673 1.26861 0.95462 1.04896 0.90927 0.85168 0.78723 0.75097 0.80339 1.17868 1.19386 1.18321 1.19804 0.98534 0.91710 1.40668 0.89184 1.17672 0.90879 0.93558 0.88797 1.20676 1.04827 0.91181 1.07582 1.20292 0.94147 0.95928 0.96223 1.21350 1.04864 0.94360 1.12855 1.20033 0.90588 0.93560 0.97296 1.98253 1.42744 1.98905 1.67183 1.20844 1.00200 0.95323 1.02308 1.85068 1.44778 0.99146 1.65408 1.23732 0.97629 0.99332 1.01932 1.20376 1.00859 0.87826 1.02584 0.89622 0.86918 0.86309 0.86416 0.86227 0.88376 0.88014 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -41.29 10.96 21.81 0.24 -41.05 15 2 C 0.04 1.69 5.15 85.21 0.44 2.13 15 3 Si 0.99 36.00 29.59 68.60 2.03 38.03 15 4 H -0.25 -8.87 7.11 99.48 0.71 -8.17 15 5 H -0.27 -9.43 7.11 99.48 0.71 -8.72 15 6 H -0.26 -9.28 7.11 99.48 0.71 -8.57 15 7 C -0.48 -24.24 9.02 23.35 0.21 -24.03 15 8 H 0.09 4.27 7.90 -2.91 -0.02 4.25 15 9 C 0.10 4.95 5.55 -21.43 -0.12 4.83 15 10 C -0.22 -10.30 9.64 22.72 0.22 -10.08 15 11 C -0.06 -2.55 5.95 -19.89 -0.12 -2.67 15 12 C -0.22 -10.05 6.34 22.95 0.15 -9.91 15 13 C 0.02 0.80 6.30 22.29 0.14 0.94 15 14 Cl -0.10 -4.36 28.60 -2.72 -0.08 -4.44 15 15 C -0.17 -8.71 8.38 22.42 0.19 -8.52 15 16 S -0.18 -6.73 22.79 -56.49 -1.29 -8.02 15 17 C -0.08 -2.06 7.28 71.82 0.52 -1.54 15 18 C -0.08 -2.35 6.26 29.54 0.19 -2.17 15 19 H 0.29 13.44 8.30 -92.70 -0.77 12.67 15 20 H 0.11 4.77 8.06 -2.91 -0.02 4.75 15 21 H 0.12 6.54 6.21 -2.91 -0.02 6.52 15 22 H 0.12 2.52 8.14 -2.38 -0.02 2.50 15 23 H 0.12 2.51 8.14 -2.39 -0.02 2.49 15 24 H 0.10 2.59 8.14 -2.39 -0.02 2.57 15 25 H 0.10 2.61 8.14 -2.39 -0.02 2.59 15 Total: -1.00 -57.55 246.16 3.93 -53.62 By element: Atomic # 1 Polarization: 11.66 SS G_CDS: 1.21 Total: 12.87 kcal Atomic # 6 Polarization: -52.83 SS G_CDS: 1.81 Total: -51.01 kcal Atomic # 7 Polarization: -41.29 SS G_CDS: 0.24 Total: -41.05 kcal Atomic # 14 Polarization: 36.00 SS G_CDS: 2.03 Total: 38.03 kcal Atomic # 16 Polarization: -6.73 SS G_CDS: -1.29 Total: -8.02 kcal Atomic # 17 Polarization: -4.36 SS G_CDS: -0.08 Total: -4.44 kcal Total: -57.55 3.93 -53.62 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259896984.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.122 kcal (2) G-P(sol) polarization free energy of solvation -57.547 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.426 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.925 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.622 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.500 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds