Wall clock time and date at job start Thu Apr 9 2020 15:11:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35926 * 117.00059 * 2 1 4 4 C 1.38702 * 120.05813 * 0.02562 * 3 2 1 5 5 C 1.38157 * 119.95696 * 179.74244 * 4 3 2 6 6 C 1.38283 * 120.07168 * 0.23677 * 5 4 3 7 7 C 1.50706 * 119.93654 * 180.02562 * 6 5 4 8 8 C 1.38244 * 120.12105 * 359.97438 * 6 5 4 9 9 C 1.50699 * 119.97745 * 180.02562 * 8 6 5 10 10 C 1.50700 * 109.47181 * 89.99726 * 9 8 6 11 11 H 1.08003 * 120.00079 * 0.02562 * 10 9 8 12 12 C 1.37880 * 120.00028 * 180.02562 * 10 9 8 13 13 N 1.31516 * 119.99864 * 359.97438 * 12 10 9 14 14 Si 1.86800 * 120.00000 * 180.02562 * 12 10 9 15 15 H 1.48503 * 109.47178 * 90.00085 * 14 12 10 16 16 H 1.48501 * 109.47063 * 209.99846 * 14 12 10 17 17 H 1.48506 * 109.47059 * 329.99816 * 14 12 10 18 18 C 1.38251 * 120.04272 * 0.04607 * 8 6 5 19 19 Cl 1.73606 * 120.03732 * 179.97438 * 18 8 6 20 20 H 1.09003 * 109.47443 * 180.02562 * 1 2 3 21 21 H 1.09002 * 109.46975 * 299.99836 * 1 2 3 22 22 H 1.09000 * 109.47339 * 59.99536 * 1 2 3 23 23 H 1.08002 * 120.02589 * 0.02566 * 4 3 2 24 24 H 1.07996 * 119.96192 * 180.24990 * 5 4 3 25 25 H 1.08998 * 109.47162 * 89.99647 * 7 6 5 26 26 H 1.08999 * 109.46619 * 209.99607 * 7 6 5 27 27 H 1.09000 * 109.46551 * 329.99554 * 7 6 5 28 28 H 1.08993 * 109.47225 * 210.00294 * 9 8 6 29 29 H 1.09004 * 109.47348 * 329.99733 * 9 8 6 30 30 H 0.97002 * 119.99844 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2111 0.0000 4 6 1.2919 2.3751 0.0005 5 6 1.9213 3.6050 0.0059 6 6 3.3022 3.6766 0.0058 7 6 3.9856 5.0198 0.0123 8 6 4.0570 2.5184 0.0009 9 6 5.5618 2.6003 0.0014 10 6 6.0632 2.6215 1.4223 11 1 5.3624 2.5795 2.2430 12 6 7.4168 2.6946 1.6747 13 7 8.2702 2.7453 0.6754 14 14 8.0384 2.7202 3.4361 15 1 8.2799 1.3290 3.8960 16 1 9.3062 3.4905 3.5024 17 1 7.0233 3.3613 4.3100 18 6 3.4322 1.2852 -0.0049 19 17 4.3802 -0.1692 -0.0118 20 1 -0.3634 -1.0277 0.0005 21 1 -0.3633 0.5138 0.8900 22 1 -0.3634 0.5139 -0.8899 23 1 0.2132 2.3202 0.0014 24 1 1.3341 4.5114 0.0104 25 1 4.1507 5.3386 1.0415 26 1 4.9434 4.9425 -0.5022 27 1 3.3570 5.7497 -0.4978 28 1 5.9730 1.7337 -0.5162 29 1 5.8763 3.5109 -0.5085 30 1 9.2224 2.7971 0.8529 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259904760.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 15:11:34 Heat of formation + Delta-G solvation = -50.151808 kcal Electronic energy + Delta-G solvation = -14943.093231 eV Core-core repulsion = 12342.447452 eV Total energy + Delta-G solvation = -2600.645779 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 240.066 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -41.14030 -38.91971 -37.16412 -35.31033 -33.12915 -32.49637 -29.56194 -28.24434 -26.73741 -25.22245 -22.89255 -21.45983 -18.73740 -18.41285 -17.54786 -16.65140 -16.59186 -16.46960 -15.23474 -14.90384 -14.77629 -14.51829 -13.97439 -13.55700 -13.41121 -13.22449 -12.82884 -12.76447 -12.55611 -12.31056 -12.21679 -12.01377 -11.73418 -11.66134 -11.37995 -11.16784 -10.51968 -9.47625 -8.89668 -8.14888 -6.24260 0.33491 0.47460 1.39483 1.41003 1.46800 1.51164 2.36743 2.42373 2.77183 3.17498 3.92917 4.01940 4.23210 4.37568 4.45895 4.46248 4.48904 4.76151 4.77785 4.93422 5.06250 5.14223 5.24368 5.29854 5.46523 5.50882 5.80167 5.90334 5.96397 6.22521 6.44608 6.84902 7.41529 8.95126 Molecular weight = 240.07amu Principal moments of inertia in cm(-1) A = 0.026757 B = 0.008393 C = 0.007220 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1046.198599 B = 3335.456483 C = 3877.401661 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.331 6.331 3 C 0.120 3.880 4 C -0.206 4.206 5 C -0.069 4.069 6 C -0.130 4.130 7 C -0.099 4.099 8 C -0.028 4.028 9 C 0.055 3.945 10 C -0.506 4.506 11 H 0.047 0.953 12 C 0.010 3.990 13 N -0.928 5.928 14 Si 0.954 3.046 15 H -0.279 1.279 16 H -0.278 1.278 17 H -0.265 1.265 18 C -0.095 4.095 19 Cl -0.078 7.078 20 H 0.117 0.883 21 H 0.067 0.933 22 H 0.070 0.930 23 H 0.170 0.830 24 H 0.165 0.835 25 H 0.063 0.937 26 H 0.050 0.950 27 H 0.090 0.910 28 H 0.011 0.989 29 H 0.022 0.978 30 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.626 0.291 -1.420 16.690 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.245 6.245 3 C 0.074 3.926 4 C -0.224 4.224 5 C -0.087 4.087 6 C -0.130 4.130 7 C -0.156 4.156 8 C -0.029 4.029 9 C 0.019 3.981 10 C -0.544 4.544 11 H 0.065 0.935 12 C -0.188 4.188 13 N -0.568 5.568 14 Si 0.779 3.221 15 H -0.205 1.205 16 H -0.204 1.204 17 H -0.189 1.189 18 C -0.122 4.122 19 Cl -0.050 7.050 20 H 0.136 0.864 21 H 0.086 0.914 22 H 0.089 0.911 23 H 0.187 0.813 24 H 0.182 0.818 25 H 0.082 0.918 26 H 0.069 0.931 27 H 0.109 0.891 28 H 0.029 0.971 29 H 0.040 0.960 30 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -16.289 -0.026 -1.458 16.354 hybrid contribution 0.878 -0.353 0.747 1.206 sum -15.411 -0.378 -0.711 15.432 Atomic orbital electron populations 1.23395 0.76079 1.05598 1.02596 1.86118 1.23782 1.25993 1.88623 1.18757 0.89646 0.86276 0.97895 1.21383 1.01160 0.90529 1.09371 1.21231 0.92749 0.98582 0.96148 1.19934 0.94253 0.94934 1.03928 1.20676 1.00104 0.92542 1.02256 1.20121 0.97984 0.90912 0.93884 1.18195 0.86135 0.96915 0.96887 1.21083 0.91623 1.49903 0.91784 0.93505 1.25735 0.97065 0.95014 1.00955 1.70066 1.02518 1.51614 1.32619 0.85617 0.78000 0.78161 0.80351 1.20477 1.20354 1.18915 1.20276 0.89315 0.88114 1.14479 1.98299 1.72982 1.36458 1.97213 0.86446 0.91400 0.91104 0.81281 0.81761 0.91815 0.93072 0.89142 0.97106 0.96041 0.92768 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.31 9.81 113.37 1.11 1.42 16 2 O -0.33 -10.26 9.96 -92.72 -0.92 -11.19 16 3 C 0.12 4.19 6.68 22.52 0.15 4.34 16 4 C -0.21 -5.63 9.04 22.36 0.20 -5.43 16 5 C -0.07 -1.96 9.69 22.26 0.22 -1.74 16 6 C -0.13 -4.82 5.88 -19.85 -0.12 -4.94 16 7 C -0.10 -3.37 9.60 71.24 0.68 -2.69 16 8 C -0.03 -1.27 5.07 -19.86 -0.10 -1.38 16 9 C 0.06 2.97 4.30 29.10 0.13 3.10 16 10 C -0.51 -28.92 9.09 25.60 0.23 -28.69 16 11 H 0.05 2.69 7.74 -2.91 -0.02 2.67 16 12 C 0.01 0.59 5.46 84.66 0.46 1.06 16 13 N -0.93 -56.13 13.29 21.45 0.28 -55.84 16 14 Si 0.95 45.09 29.54 68.60 2.03 47.12 16 15 H -0.28 -13.05 7.11 99.48 0.71 -12.35 16 16 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 17 H -0.26 -12.03 7.11 99.48 0.71 -11.32 16 18 C -0.09 -4.07 6.33 22.41 0.14 -3.93 16 19 Cl -0.08 -3.51 26.84 -2.72 -0.07 -3.58 16 20 H 0.12 1.58 8.14 -2.39 -0.02 1.56 16 21 H 0.07 1.02 7.66 -2.39 -0.02 1.01 16 22 H 0.07 1.02 7.66 -2.39 -0.02 1.00 16 23 H 0.17 3.09 6.30 -2.91 -0.02 3.07 16 24 H 0.16 3.21 8.06 -2.91 -0.02 3.18 16 25 H 0.06 2.20 8.14 -2.39 -0.02 2.18 16 26 H 0.05 2.01 5.94 -2.39 -0.01 1.99 16 27 H 0.09 2.28 8.08 -2.39 -0.02 2.26 16 28 H 0.01 0.63 6.90 -2.39 -0.02 0.61 16 29 H 0.02 1.20 5.94 -2.39 -0.01 1.19 16 30 H 0.26 15.02 8.31 -92.71 -0.77 14.25 16 Total: -1.00 -68.64 270.78 5.57 -63.07 By element: Atomic # 1 Polarization: -1.84 SS G_CDS: 1.15 Total: -0.69 kcal Atomic # 6 Polarization: -41.99 SS G_CDS: 3.11 Total: -38.88 kcal Atomic # 7 Polarization: -56.13 SS G_CDS: 0.28 Total: -55.84 kcal Atomic # 8 Polarization: -10.26 SS G_CDS: -0.92 Total: -11.19 kcal Atomic # 14 Polarization: 45.09 SS G_CDS: 2.03 Total: 47.12 kcal Atomic # 17 Polarization: -3.51 SS G_CDS: -0.07 Total: -3.58 kcal Total: -68.64 5.57 -63.07 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259904760.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.916 kcal (2) G-P(sol) polarization free energy of solvation -68.638 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.722 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.571 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.068 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.152 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds