Wall clock time and date at job start Thu Apr 9 2020 15:11:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30871 * 1 3 3 Si 1.86806 * 120.00172 * 2 1 4 4 H 1.48501 * 109.46831 * 270.00232 * 3 2 1 5 5 H 1.48493 * 109.46894 * 30.00274 * 3 2 1 6 6 H 1.48502 * 109.47037 * 150.00211 * 3 2 1 7 7 C 1.39919 * 119.99685 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99726 * 197.88725 * 7 2 1 9 9 C 1.41142 * 120.00312 * 17.89013 * 7 2 1 10 10 C 1.40508 * 120.12873 * 24.97203 * 9 7 2 11 11 C 1.38451 * 120.14514 * 179.90760 * 10 9 7 12 12 C 1.39577 * 119.29122 * 359.58314 * 11 10 9 13 13 C 1.37968 * 121.25335 * 0.65439 * 12 11 10 14 14 Cl 1.73600 * 119.89275 * 179.56785 * 13 12 11 15 15 C 1.38595 * 120.21494 * 359.60869 * 13 12 11 16 16 O 1.35718 * 120.32114 * 179.90878 * 15 13 12 17 17 C 1.52037 * 106.97065 * 181.25042 * 12 11 10 18 18 C 1.54667 * 101.84024 * 15.21445 * 17 12 11 19 19 O 1.36271 * 129.62219 * 179.55115 * 11 10 9 20 20 H 0.97004 * 120.00130 * 359.97438 * 1 2 3 21 21 H 1.08001 * 119.92063 * 359.88315 * 10 9 7 22 22 H 0.96693 * 114.00041 * 272.36487 * 16 15 13 23 23 H 1.08999 * 110.88961 * 257.13624 * 17 12 11 24 24 H 1.08993 * 111.08947 * 133.38542 * 17 12 11 25 25 H 1.08996 * 110.72974 * 216.26984 * 18 17 12 26 26 H 1.09004 * 110.73372 * 93.15257 * 18 17 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3087 0.0000 0.0000 3 14 2.2428 1.6178 0.0000 4 1 2.4902 2.0464 -1.4001 5 1 1.4403 2.6526 0.7001 6 1 3.5404 1.4401 0.7000 7 6 2.0082 -1.2118 -0.0005 8 1 3.0491 -1.2345 0.2867 9 6 1.3537 -2.4044 -0.3766 10 6 0.2322 -2.3571 -1.2216 11 6 -0.4090 -3.5269 -1.5922 12 6 0.0763 -4.7492 -1.1247 13 6 1.1735 -4.8119 -0.2905 14 17 1.7404 -6.3507 0.2791 15 6 1.8240 -3.6503 0.0949 16 8 2.9023 -3.7094 0.9168 17 6 -0.8061 -5.8343 -1.7209 18 6 -1.5380 -5.0657 -2.8458 19 8 -1.5029 -3.7047 -2.3851 20 1 -0.4850 0.8401 0.0004 21 1 -0.1307 -1.4060 -1.5825 22 1 2.6806 -3.6981 1.8579 23 1 -1.5137 -6.2097 -0.9816 24 1 -0.2059 -6.6465 -2.1309 25 1 -2.5664 -5.4132 -2.9446 26 1 -1.0058 -5.1667 -3.7917 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259911426.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 15:11:35 Heat of formation + Delta-G solvation = -89.401215 kcal Electronic energy + Delta-G solvation = -14875.679269 eV Core-core repulsion = 12137.498413 eV Total energy + Delta-G solvation = -2738.180856 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 240.034 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -41.56986 -39.31177 -37.28048 -36.64278 -35.17775 -32.97488 -30.64304 -29.55445 -27.04447 -23.96145 -22.68910 -22.38453 -19.50115 -18.77070 -17.92502 -17.45872 -16.83062 -16.41388 -15.93858 -15.34125 -14.75435 -14.51963 -13.97275 -13.67919 -13.49403 -13.22205 -12.97294 -12.55264 -12.43589 -12.37359 -12.30264 -11.96584 -11.74994 -11.33312 -10.97859 -10.82043 -9.39648 -8.90724 -8.61131 -6.48759 0.66371 0.67265 1.35220 1.40197 1.48341 1.53947 2.17510 2.48522 2.64358 3.32390 3.66911 3.87703 4.18978 4.25971 4.48575 4.70514 4.91463 4.94347 4.98850 5.10673 5.28891 5.38003 5.51881 5.78289 5.85419 6.20912 6.55407 6.66123 6.72738 7.23288 8.18186 Molecular weight = 240.03amu Principal moments of inertia in cm(-1) A = 0.026233 B = 0.009528 C = 0.007175 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1067.085495 B = 2938.058685 C = 3901.625633 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.808 5.808 2 C 0.036 3.964 3 Si 0.989 3.011 4 H -0.262 1.262 5 H -0.264 1.264 6 H -0.256 1.256 7 C -0.465 4.465 8 H 0.088 0.912 9 C 0.101 3.899 10 C -0.201 4.201 11 C 0.113 3.887 12 C -0.288 4.288 13 C 0.023 3.977 14 Cl -0.079 7.079 15 C -0.050 4.050 16 O -0.484 6.484 17 C -0.079 4.079 18 C 0.049 3.951 19 O -0.332 6.332 20 H 0.295 0.705 21 H 0.111 0.889 22 H 0.373 0.627 23 H 0.084 0.916 24 H 0.093 0.907 25 H 0.131 0.869 26 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.220 -5.293 -1.511 5.638 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.432 5.432 2 C -0.181 4.181 3 Si 0.809 3.191 4 H -0.186 1.186 5 H -0.189 1.189 6 H -0.179 1.179 7 C -0.493 4.493 8 H 0.106 0.894 9 C 0.098 3.902 10 C -0.221 4.221 11 C 0.068 3.932 12 C -0.291 4.291 13 C -0.005 4.005 14 Cl -0.050 7.050 15 C -0.096 4.096 16 O -0.292 6.292 17 C -0.116 4.116 18 C -0.026 4.026 19 O -0.248 6.248 20 H 0.106 0.894 21 H 0.129 0.871 22 H 0.227 0.773 23 H 0.102 0.898 24 H 0.112 0.888 25 H 0.149 0.851 26 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -1.242 -5.163 -2.043 5.690 hybrid contribution 0.042 0.483 0.652 0.813 sum -1.200 -4.680 -1.391 5.028 Atomic orbital electron populations 1.69892 1.09213 1.31406 1.32650 1.26914 0.95478 1.04915 0.90837 0.85084 0.79105 0.75192 0.79704 1.18637 1.18860 1.17918 1.19731 0.98703 0.91393 1.39443 0.89436 1.17654 0.90534 0.92430 0.89614 1.20334 1.00828 0.95423 1.05556 1.19397 0.87134 0.94312 0.92372 1.20170 1.02473 0.95624 1.10813 1.20293 0.95307 0.85125 0.99736 1.98254 1.89077 1.29347 1.88297 1.18095 0.96528 0.90496 1.04506 1.84723 1.29175 1.95884 1.19406 1.21535 0.96785 0.96187 0.97085 1.24003 1.03555 0.77974 0.97027 1.86742 1.41250 1.32836 1.63934 0.89445 0.87123 0.77312 0.89760 0.88839 0.85134 0.90044 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -40.89 10.98 21.82 0.24 -40.65 15 2 C 0.04 1.76 5.13 85.24 0.44 2.20 15 3 Si 0.99 36.72 29.60 68.60 2.03 38.75 15 4 H -0.26 -9.52 7.11 99.48 0.71 -8.81 15 5 H -0.26 -9.22 7.11 99.48 0.71 -8.51 15 6 H -0.26 -9.27 7.11 99.48 0.71 -8.56 15 7 C -0.47 -24.40 8.70 23.39 0.20 -24.20 15 8 H 0.09 4.52 7.65 -2.91 -0.02 4.50 15 9 C 0.10 5.45 5.57 -21.27 -0.12 5.33 15 10 C -0.20 -10.78 8.70 22.87 0.20 -10.58 15 11 C 0.11 5.45 7.01 22.64 0.16 5.61 15 12 C -0.29 -12.59 6.15 -19.18 -0.12 -12.71 15 13 C 0.02 1.02 6.31 22.29 0.14 1.16 15 14 Cl -0.08 -2.92 28.33 -2.72 -0.08 -2.99 15 15 C -0.05 -2.45 6.74 23.10 0.16 -2.29 15 16 O -0.48 -21.76 12.26 -90.40 -1.11 -22.87 15 17 C -0.08 -2.56 6.93 30.84 0.21 -2.34 15 18 C 0.05 1.47 7.98 72.55 0.58 2.04 15 19 O -0.33 -14.19 11.11 -96.65 -1.07 -15.26 15 20 H 0.29 13.38 8.30 -92.70 -0.77 12.61 15 21 H 0.11 6.23 6.16 -2.91 -0.02 6.21 15 22 H 0.37 13.93 9.06 -74.06 -0.67 13.26 15 23 H 0.08 2.51 8.14 -2.39 -0.02 2.49 15 24 H 0.09 2.65 8.14 -2.39 -0.02 2.63 15 25 H 0.13 2.89 8.14 -2.39 -0.02 2.87 15 26 H 0.08 2.18 8.14 -2.38 -0.02 2.16 15 Total: -1.00 -60.40 246.55 2.42 -57.97 By element: Atomic # 1 Polarization: 20.28 SS G_CDS: 0.56 Total: 20.85 kcal Atomic # 6 Polarization: -37.64 SS G_CDS: 1.85 Total: -35.79 kcal Atomic # 7 Polarization: -40.89 SS G_CDS: 0.24 Total: -40.65 kcal Atomic # 8 Polarization: -35.95 SS G_CDS: -2.18 Total: -38.13 kcal Atomic # 14 Polarization: 36.72 SS G_CDS: 2.03 Total: 38.75 kcal Atomic # 17 Polarization: -2.92 SS G_CDS: -0.08 Total: -2.99 kcal Total: -60.40 2.42 -57.97 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259911426.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.429 kcal (2) G-P(sol) polarization free energy of solvation -60.397 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.826 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.425 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.972 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.401 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds