Wall clock time and date at job start Thu Apr 9 2020 15:11:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38735 * 120.03004 * 2 1 4 4 O 1.35904 * 120.04849 * 0.03916 * 3 2 1 5 5 C 1.38721 * 119.89908 * 179.79186 * 3 2 1 6 6 C 1.38170 * 119.96902 * 0.50429 * 5 3 2 7 7 C 1.50707 * 119.96220 * 179.74837 * 6 5 3 8 8 H 1.08995 * 109.46963 * 359.72547 * 7 6 5 9 9 C 1.52999 * 109.46640 * 239.72219 * 7 6 5 10 10 C 1.50697 * 109.46656 * 119.72553 * 7 6 5 11 11 H 1.08002 * 120.00599 * 0.02562 * 10 7 6 12 12 C 1.37880 * 119.99675 * 179.97438 * 10 7 6 13 13 N 1.31517 * 120.00210 * 179.97438 * 12 10 7 14 14 Si 1.86800 * 120.00019 * 0.02562 * 12 10 7 15 15 H 1.48503 * 109.46845 * 269.99914 * 14 12 10 16 16 H 1.48503 * 109.47399 * 29.99403 * 14 12 10 17 17 H 1.48498 * 109.47295 * 150.00010 * 14 12 10 18 18 C 1.38221 * 120.06718 * 359.47089 * 6 5 3 19 19 C 1.38236 * 120.03794 * 180.02562 * 2 1 3 20 20 Cl 1.73602 * 119.98168 * 359.97438 * 19 2 1 21 21 H 1.08997 * 109.47289 * 269.97743 * 1 2 3 22 22 H 1.09001 * 109.47655 * 29.97939 * 1 2 3 23 23 H 1.09000 * 109.46902 * 149.98353 * 1 2 3 24 24 H 0.96699 * 113.99773 * 90.00466 * 4 3 2 25 25 H 1.07997 * 120.01141 * 180.23132 * 5 3 2 26 26 H 1.09000 * 109.47280 * 299.99919 * 9 7 6 27 27 H 1.08998 * 109.47206 * 60.00324 * 9 7 6 28 28 H 1.09006 * 109.46667 * 180.02562 * 9 7 6 29 29 H 0.96998 * 119.99640 * 180.02562 * 13 12 10 30 30 H 1.08004 * 119.94766 * 180.25143 * 18 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2013 1.2011 0.0000 4 8 1.5234 2.3790 0.0008 5 6 3.5885 1.1979 0.0044 6 6 4.2760 -0.0006 -0.0018 7 6 5.7831 -0.0038 -0.0028 8 1 6.1486 1.0231 -0.0030 9 6 6.2906 -0.7262 -1.2524 10 6 6.2846 -0.7153 1.2273 11 1 5.5824 -1.1246 1.9385 12 6 7.6400 -0.8446 1.4444 13 7 8.0778 -1.4651 2.5182 14 14 8.8547 -0.1373 0.2140 15 1 9.1730 -1.1623 -0.8124 16 1 8.2571 1.0526 -0.4435 17 1 10.0995 0.2598 0.9196 18 6 3.5830 -1.1965 -0.0013 19 6 2.1990 -1.1967 -0.0005 20 17 1.3315 -2.7004 -0.0005 21 1 -0.3634 -0.0004 1.0276 22 1 -0.3634 0.8901 -0.5135 23 1 -0.3633 -0.8898 -0.5141 24 1 1.3278 2.7196 0.8844 25 1 4.1308 2.1319 0.0082 26 1 5.9250 -1.7531 -1.2521 27 1 5.9278 -0.2116 -2.1421 28 1 7.3807 -0.7289 -1.2529 29 1 9.0314 -1.5557 2.6710 30 1 4.1223 -2.1322 -0.0021 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259931485.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 15:11:38 Heat of formation + Delta-G solvation = -56.522410 kcal Electronic energy + Delta-G solvation = -14885.476426 eV Core-core repulsion = 12284.554397 eV Total energy + Delta-G solvation = -2600.922029 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 240.066 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.02358 -38.24622 -37.61458 -35.89272 -34.02128 -32.18116 -30.80344 -27.54194 -27.04503 -23.83053 -23.45155 -21.49002 -18.99933 -18.59476 -17.20602 -17.07508 -16.49874 -16.22318 -15.51412 -14.89195 -14.66135 -14.56732 -14.09126 -13.65127 -13.41767 -13.31354 -13.11905 -12.95026 -12.69040 -12.27682 -12.00244 -11.99473 -11.76320 -11.58850 -11.18235 -11.12849 -10.73683 -9.56940 -9.34303 -8.29265 -6.34084 0.17764 0.27842 1.11608 1.32757 1.37757 1.48139 2.32674 2.55976 3.05994 3.30079 3.81277 3.97056 4.05286 4.43432 4.45117 4.55706 4.72465 4.75801 4.79432 4.83618 4.92805 5.08091 5.25916 5.27577 5.37058 5.39829 5.60007 5.77009 5.83105 6.29359 6.71731 6.83866 7.30547 8.87055 Molecular weight = 240.07amu Principal moments of inertia in cm(-1) A = 0.029040 B = 0.007502 C = 0.006570 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 963.963052 B = 3731.618245 C = 4260.918725 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.124 4.124 3 C 0.121 3.879 4 O -0.493 6.493 5 C -0.151 4.151 6 C -0.029 4.029 7 C 0.040 3.960 8 H 0.041 0.959 9 C -0.144 4.144 10 C -0.510 4.510 11 H 0.035 0.965 12 C 0.014 3.986 13 N -0.948 5.948 14 Si 0.948 3.052 15 H -0.267 1.267 16 H -0.243 1.243 17 H -0.300 1.300 18 C -0.117 4.117 19 C -0.028 4.028 20 Cl -0.064 7.064 21 H 0.083 0.917 22 H 0.083 0.917 23 H 0.072 0.928 24 H 0.410 0.590 25 H 0.139 0.861 26 H 0.053 0.947 27 H 0.062 0.938 28 H 0.036 0.964 29 H 0.266 0.734 30 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.531 4.775 -6.780 15.870 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.126 4.126 3 C 0.076 3.924 4 O -0.305 6.305 5 C -0.169 4.169 6 C -0.029 4.029 7 C 0.021 3.979 8 H 0.059 0.941 9 C -0.201 4.201 10 C -0.548 4.548 11 H 0.053 0.947 12 C -0.183 4.183 13 N -0.588 5.588 14 Si 0.775 3.225 15 H -0.194 1.194 16 H -0.167 1.167 17 H -0.228 1.228 18 C -0.136 4.136 19 C -0.055 4.055 20 Cl -0.035 7.035 21 H 0.101 0.899 22 H 0.102 0.898 23 H 0.091 0.909 24 H 0.269 0.731 25 H 0.157 0.843 26 H 0.072 0.928 27 H 0.081 0.919 28 H 0.054 0.946 29 H 0.075 0.925 30 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -13.456 4.537 -7.287 15.961 hybrid contribution 1.014 -0.258 0.569 1.190 sum -12.442 4.280 -6.718 14.773 Atomic orbital electron populations 1.20721 0.87980 1.03949 1.03487 1.20161 0.98481 0.90383 1.03551 1.17920 0.88932 0.85126 1.00463 1.84720 1.75918 1.34593 1.35314 1.21573 0.93895 0.98571 1.02881 1.19838 0.96246 0.92072 0.94788 1.18268 0.88641 0.97069 0.93917 0.94082 1.22112 0.99299 1.01049 0.97627 1.21147 0.91990 1.35677 1.05937 0.94682 1.25840 1.00344 0.95034 0.97072 1.70039 1.15081 1.44546 1.29099 0.85860 0.77682 0.80296 0.78666 1.19351 1.16700 1.22794 1.20906 0.91906 0.99177 1.01568 1.20653 0.91667 0.87074 1.06072 1.98321 1.76454 1.31787 1.96931 0.89868 0.89790 0.90877 0.73124 0.84346 0.92812 0.91932 0.94556 0.92500 0.86214 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.26 9.39 71.24 0.67 -1.60 16 2 C -0.12 -3.61 5.90 -19.75 -0.12 -3.72 16 3 C 0.12 3.53 6.68 22.50 0.15 3.68 16 4 O -0.49 -11.28 12.55 -92.47 -1.16 -12.44 16 5 C -0.15 -5.13 9.61 22.37 0.21 -4.91 16 6 C -0.03 -1.15 4.73 -19.88 -0.09 -1.24 16 7 C 0.04 1.79 2.07 -12.28 -0.03 1.76 16 8 H 0.04 1.82 6.93 -2.39 -0.02 1.80 16 9 C -0.14 -5.84 8.49 71.98 0.61 -5.23 16 10 C -0.51 -28.22 8.82 25.60 0.23 -28.00 16 11 H 0.03 2.18 7.84 -2.91 -0.02 2.15 16 12 C 0.01 0.82 5.45 84.65 0.46 1.28 16 13 N -0.95 -58.45 13.96 21.45 0.30 -58.15 16 14 Si 0.95 43.75 24.37 68.60 1.67 45.42 16 15 H -0.27 -11.80 6.87 99.48 0.68 -11.12 16 16 H -0.24 -10.25 6.53 99.48 0.65 -9.60 16 17 H -0.30 -13.91 7.11 99.48 0.71 -13.20 16 18 C -0.12 -4.51 8.49 22.30 0.19 -4.32 16 19 C -0.03 -0.92 6.31 22.31 0.14 -0.78 16 20 Cl -0.06 -1.85 27.29 -2.72 -0.07 -1.92 16 21 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 22 H 0.08 1.62 7.53 -2.39 -0.02 1.61 16 23 H 0.07 1.54 6.90 -2.39 -0.02 1.52 16 24 H 0.41 5.48 9.06 -74.06 -0.67 4.80 16 25 H 0.14 4.33 7.94 -2.91 -0.02 4.31 16 26 H 0.05 2.16 7.38 -2.39 -0.02 2.15 16 27 H 0.06 2.15 8.14 -2.39 -0.02 2.13 16 28 H 0.04 1.51 3.27 -2.38 -0.01 1.50 16 29 H 0.27 15.40 8.31 -92.71 -0.77 14.62 16 30 H 0.12 4.94 7.57 -2.91 -0.02 4.92 16 Total: -1.00 -64.61 263.64 3.58 -61.03 By element: Atomic # 1 Polarization: 8.73 SS G_CDS: 0.41 Total: 9.14 kcal Atomic # 6 Polarization: -45.51 SS G_CDS: 2.43 Total: -43.09 kcal Atomic # 7 Polarization: -58.45 SS G_CDS: 0.30 Total: -58.15 kcal Atomic # 8 Polarization: -11.28 SS G_CDS: -1.16 Total: -12.44 kcal Atomic # 14 Polarization: 43.75 SS G_CDS: 1.67 Total: 45.42 kcal Atomic # 17 Polarization: -1.85 SS G_CDS: -0.07 Total: -1.92 kcal Total: -64.61 3.58 -61.03 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259931485.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.506 kcal (2) G-P(sol) polarization free energy of solvation -64.606 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.100 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.578 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.028 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.522 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds