Wall clock time and date at job start Thu Apr 9 2020 15:11:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38723 * 120.03569 * 2 1 4 4 O 1.35901 * 120.05084 * 0.02562 * 3 2 1 5 5 C 1.38731 * 119.90337 * 179.74975 * 3 2 1 6 6 C 1.38167 * 119.96478 * 0.56702 * 5 3 2 7 7 C 1.50701 * 119.96398 * 179.70677 * 6 5 3 8 8 H 1.09002 * 109.47060 * 359.72661 * 7 6 5 9 9 C 1.53002 * 109.47419 * 119.72742 * 7 6 5 10 10 C 1.50703 * 109.47064 * 239.72697 * 7 6 5 11 11 H 1.07996 * 119.99751 * 359.97438 * 10 7 6 12 12 C 1.37877 * 120.00001 * 180.02562 * 10 7 6 13 13 N 1.31517 * 120.00094 * 359.97438 * 12 10 7 14 14 Si 1.86803 * 119.99955 * 180.02562 * 12 10 7 15 15 H 1.48498 * 109.47171 * 89.99544 * 14 12 10 16 16 H 1.48500 * 109.46632 * 209.99795 * 14 12 10 17 17 H 1.48494 * 109.47053 * 329.99231 * 14 12 10 18 18 C 1.38230 * 120.07251 * 359.43405 * 6 5 3 19 19 C 1.38243 * 120.03058 * 180.02562 * 2 1 3 20 20 Cl 1.73597 * 119.98919 * 359.97438 * 19 2 1 21 21 H 1.09000 * 109.47222 * 269.98024 * 1 2 3 22 22 H 1.08995 * 109.46874 * 29.97637 * 1 2 3 23 23 H 1.09006 * 109.47336 * 149.97873 * 1 2 3 24 24 H 0.96701 * 113.99766 * 89.99659 * 4 3 2 25 25 H 1.07997 * 120.01836 * 180.27074 * 5 3 2 26 26 H 1.08996 * 109.47407 * 180.02562 * 9 7 6 27 27 H 1.09000 * 109.46986 * 300.00096 * 9 7 6 28 28 H 1.09002 * 109.47075 * 59.99368 * 9 7 6 29 29 H 0.97000 * 120.00333 * 179.97438 * 13 12 10 30 30 H 1.07997 * 119.95268 * 180.29663 * 18 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2014 1.2009 0.0000 4 8 1.5236 2.3789 0.0005 5 6 3.5887 1.1977 0.0053 6 6 4.2760 -0.0008 -0.0014 7 6 5.7830 -0.0042 -0.0023 8 1 6.1487 1.0227 -0.0022 9 6 6.2923 -0.7271 1.2463 10 6 6.2830 -0.7153 -1.2334 11 1 5.5798 -1.1242 -1.9438 12 6 7.6381 -0.8447 -1.4523 13 7 8.4944 -0.3472 -0.5870 14 14 8.2578 -1.7255 -2.9787 15 1 8.4249 -0.7457 -4.0820 16 1 9.5643 -2.3667 -2.6839 17 1 7.2767 -2.7642 -3.3833 18 6 3.5830 -1.1968 -0.0014 19 6 2.1989 -1.1969 -0.0005 20 17 1.3314 -2.7005 -0.0005 21 1 -0.3634 -0.0004 1.0277 22 1 -0.3633 0.8902 -0.5134 23 1 -0.3634 -0.8898 -0.5142 24 1 1.3278 2.7196 0.8841 25 1 4.1311 2.1316 0.0097 26 1 7.3823 -0.7292 1.2458 27 1 5.9307 -0.2128 2.1367 28 1 5.9266 -1.7539 1.2461 29 1 9.4478 -0.4385 -0.7407 30 1 4.1222 -2.1325 -0.0018 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259931488.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 15:11:39 Heat of formation + Delta-G solvation = -45.650535 kcal Electronic energy + Delta-G solvation = -14840.845120 eV Core-core repulsion = 12240.394530 eV Total energy + Delta-G solvation = -2600.450589 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 240.066 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.62622 -36.90527 -36.15060 -34.24153 -32.21177 -29.93124 -29.39433 -25.91307 -25.15183 -22.37519 -21.81164 -19.97310 -17.52135 -16.43990 -15.67892 -15.53770 -14.87422 -14.53101 -14.12242 -13.41160 -12.91037 -12.63758 -12.35019 -12.23676 -11.84143 -11.65133 -11.20571 -11.14537 -10.97525 -10.71664 -10.56472 -10.49837 -10.22586 -10.12625 -9.50086 -9.08211 -8.43763 -8.16880 -7.86052 -6.07497 -4.14775 1.60069 1.70465 2.46000 3.27733 3.34507 3.38547 4.00366 4.38120 4.54378 5.12593 5.23819 5.25569 5.60431 5.75157 5.91859 5.97770 6.02464 6.09529 6.42224 6.66875 6.73412 6.78193 6.90441 7.02972 7.16755 7.28081 7.63433 7.84078 7.88496 8.01204 8.29596 8.87562 9.50564 10.98203 Molecular weight = 240.07amu Principal moments of inertia in cm(-1) A = 0.026366 B = 0.007360 C = 0.006503 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1061.724901 B = 3803.414149 C = 4304.717858 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.133 4.133 3 C 0.107 3.893 4 O -0.495 6.495 5 C -0.146 4.146 6 C -0.008 4.008 7 C 0.072 3.928 8 H 0.039 0.961 9 C -0.133 4.133 10 C -0.511 4.511 11 H 0.059 0.941 12 C 0.064 3.936 13 N -0.889 5.889 14 Si 0.893 3.107 15 H -0.280 1.280 16 H -0.286 1.286 17 H -0.273 1.273 18 C -0.104 4.104 19 C -0.023 4.023 20 Cl -0.083 7.083 21 H 0.064 0.936 22 H 0.069 0.931 23 H 0.067 0.933 24 H 0.383 0.617 25 H 0.129 0.871 26 H 0.088 0.912 27 H 0.010 0.990 28 H 0.030 0.970 29 H 0.262 0.738 30 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.149 0.669 3.718 12.723 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.135 4.135 3 C 0.063 3.937 4 O -0.304 6.304 5 C -0.164 4.164 6 C -0.009 4.009 7 C 0.053 3.947 8 H 0.057 0.943 9 C -0.191 4.191 10 C -0.549 4.549 11 H 0.077 0.923 12 C -0.138 4.138 13 N -0.527 5.527 14 Si 0.721 3.279 15 H -0.206 1.206 16 H -0.211 1.211 17 H -0.198 1.198 18 C -0.123 4.123 19 C -0.049 4.049 20 Cl -0.055 7.055 21 H 0.082 0.918 22 H 0.088 0.912 23 H 0.086 0.914 24 H 0.238 0.762 25 H 0.146 0.854 26 H 0.106 0.894 27 H 0.029 0.971 28 H 0.049 0.951 29 H 0.072 0.928 30 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -12.001 0.490 3.133 12.413 hybrid contribution 0.329 -0.513 -0.367 0.712 sum -11.672 -0.024 2.767 11.995 Atomic orbital electron populations 1.20631 0.90702 1.03065 1.01942 1.19740 0.96541 0.91130 1.06062 1.18039 0.89603 0.84023 1.02054 1.84799 1.76681 1.35937 1.33002 1.21515 0.92632 0.99312 1.02962 1.20545 0.99048 0.90474 0.90812 1.17942 0.83396 0.98029 0.95284 0.94312 1.21808 1.04541 0.97834 0.94919 1.21088 0.91628 1.36468 1.05696 0.92322 1.24944 0.96814 0.95472 0.96563 1.69875 1.02121 1.45510 1.35242 0.86561 0.78253 0.79922 0.83158 1.20606 1.21143 1.19776 1.21039 0.90597 1.00135 1.00489 1.20630 0.92260 0.85534 1.06509 1.98313 1.77194 1.32884 1.97069 0.91752 0.91159 0.91365 0.76204 0.85355 0.89372 0.97135 0.95099 0.92827 0.84600 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.39 9.39 36.01 0.34 -1.05 16 2 C -0.13 -2.17 5.90 -104.44 -0.62 -2.79 16 3 C 0.11 1.79 6.68 -39.22 -0.26 1.53 16 4 O -0.50 -6.94 12.55 -19.43 -0.24 -7.18 16 5 C -0.15 -2.73 9.61 -39.43 -0.38 -3.11 16 6 C -0.01 -0.17 4.73 -104.65 -0.50 -0.67 16 7 C 0.07 1.73 2.48 -92.92 -0.23 1.50 16 8 H 0.04 1.00 7.87 -51.93 -0.41 0.59 16 9 C -0.13 -3.09 8.78 37.16 0.33 -2.76 16 10 C -0.51 -13.59 8.24 -34.44 -0.28 -13.87 16 11 H 0.06 1.57 7.60 -52.49 -0.40 1.17 16 12 C 0.06 1.71 5.30 -17.82 -0.09 1.62 16 13 N -0.89 -24.63 11.32 55.43 0.63 -24.00 16 14 Si 0.89 20.99 29.54 -169.99 -5.02 15.97 16 15 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 16 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 17 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 18 C -0.10 -2.05 8.49 -39.52 -0.34 -2.39 16 19 C -0.02 -0.40 6.31 -39.52 -0.25 -0.65 16 20 Cl -0.08 -1.28 27.29 -51.86 -1.42 -2.69 16 21 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 22 H 0.07 0.87 7.53 -51.93 -0.39 0.48 16 23 H 0.07 0.87 6.90 -51.93 -0.36 0.51 16 24 H 0.38 3.42 9.06 45.56 0.41 3.84 16 25 H 0.13 2.30 7.94 -52.49 -0.42 1.88 16 26 H 0.09 2.25 6.07 -51.93 -0.32 1.93 16 27 H 0.01 0.20 8.14 -51.93 -0.42 -0.22 16 28 H 0.03 0.68 7.38 -51.93 -0.38 0.30 16 29 H 0.26 6.93 8.31 -40.82 -0.34 6.59 16 30 H 0.14 2.74 7.57 -52.49 -0.40 2.35 16 LS Contribution 270.46 15.07 4.08 4.08 Total: -1.00 -28.23 270.46 -6.89 -35.13 By element: Atomic # 1 Polarization: 3.99 SS G_CDS: -2.64 Total: 1.35 kcal Atomic # 6 Polarization: -20.36 SS G_CDS: -2.28 Total: -22.64 kcal Atomic # 7 Polarization: -24.63 SS G_CDS: 0.63 Total: -24.00 kcal Atomic # 8 Polarization: -6.94 SS G_CDS: -0.24 Total: -7.18 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.02 Total: 15.97 kcal Atomic # 17 Polarization: -1.28 SS G_CDS: -1.42 Total: -2.69 kcal Total LS contribution 4.08 Total: 4.08 kcal Total: -28.23 -6.89 -35.13 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259931488.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.525 kcal (2) G-P(sol) polarization free energy of solvation -28.230 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.756 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.895 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.125 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.651 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds