Wall clock time and date at job start Thu Apr 9 2020 15:11:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38723 * 120.03569 * 2 1 4 4 O 1.35901 * 120.05084 * 0.02562 * 3 2 1 5 5 C 1.38731 * 119.90337 * 179.74975 * 3 2 1 6 6 C 1.38167 * 119.96478 * 0.56702 * 5 3 2 7 7 C 1.50701 * 119.96398 * 179.70677 * 6 5 3 8 8 H 1.09002 * 109.47060 * 359.72661 * 7 6 5 9 9 C 1.53002 * 109.47419 * 119.72742 * 7 6 5 10 10 C 1.50703 * 109.47064 * 239.72697 * 7 6 5 11 11 H 1.07996 * 119.99751 * 359.97438 * 10 7 6 12 12 C 1.37877 * 120.00001 * 180.02562 * 10 7 6 13 13 N 1.31517 * 120.00094 * 359.97438 * 12 10 7 14 14 Si 1.86803 * 119.99955 * 180.02562 * 12 10 7 15 15 H 1.48498 * 109.47171 * 89.99544 * 14 12 10 16 16 H 1.48500 * 109.46632 * 209.99795 * 14 12 10 17 17 H 1.48494 * 109.47053 * 329.99231 * 14 12 10 18 18 C 1.38230 * 120.07251 * 359.43405 * 6 5 3 19 19 C 1.38243 * 120.03058 * 180.02562 * 2 1 3 20 20 Cl 1.73597 * 119.98919 * 359.97438 * 19 2 1 21 21 H 1.09000 * 109.47222 * 269.98024 * 1 2 3 22 22 H 1.08995 * 109.46874 * 29.97637 * 1 2 3 23 23 H 1.09006 * 109.47336 * 149.97873 * 1 2 3 24 24 H 0.96701 * 113.99766 * 89.99659 * 4 3 2 25 25 H 1.07997 * 120.01836 * 180.27074 * 5 3 2 26 26 H 1.08996 * 109.47407 * 180.02562 * 9 7 6 27 27 H 1.09000 * 109.46986 * 300.00096 * 9 7 6 28 28 H 1.09002 * 109.47075 * 59.99368 * 9 7 6 29 29 H 0.97000 * 120.00333 * 179.97438 * 13 12 10 30 30 H 1.07997 * 119.95268 * 180.29663 * 18 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2014 1.2009 0.0000 4 8 1.5236 2.3789 0.0005 5 6 3.5887 1.1977 0.0053 6 6 4.2760 -0.0008 -0.0014 7 6 5.7830 -0.0042 -0.0023 8 1 6.1487 1.0227 -0.0022 9 6 6.2923 -0.7271 1.2463 10 6 6.2830 -0.7153 -1.2334 11 1 5.5798 -1.1242 -1.9438 12 6 7.6381 -0.8447 -1.4523 13 7 8.4944 -0.3472 -0.5870 14 14 8.2578 -1.7255 -2.9787 15 1 8.4249 -0.7457 -4.0820 16 1 9.5643 -2.3667 -2.6839 17 1 7.2767 -2.7642 -3.3833 18 6 3.5830 -1.1968 -0.0014 19 6 2.1989 -1.1969 -0.0005 20 17 1.3314 -2.7005 -0.0005 21 1 -0.3634 -0.0004 1.0277 22 1 -0.3633 0.8902 -0.5134 23 1 -0.3634 -0.8898 -0.5142 24 1 1.3278 2.7196 0.8841 25 1 4.1311 2.1316 0.0097 26 1 7.3823 -0.7292 1.2458 27 1 5.9307 -0.2128 2.1367 28 1 5.9266 -1.7539 1.2461 29 1 9.4478 -0.4385 -0.7407 30 1 4.1222 -2.1325 -0.0018 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259931488.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 15:11:39 Heat of formation + Delta-G solvation = -62.072295 kcal Electronic energy + Delta-G solvation = -14841.557221 eV Core-core repulsion = 12240.394530 eV Total energy + Delta-G solvation = -2601.162690 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 240.066 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.98406 -38.20344 -37.55588 -35.87130 -33.86340 -31.59908 -30.77549 -27.37256 -27.10140 -23.80393 -23.35918 -21.51833 -18.93466 -18.24620 -17.13817 -17.06884 -16.38794 -16.17686 -15.45548 -14.72167 -14.57771 -14.34013 -13.66080 -13.52866 -13.28203 -13.17161 -12.93017 -12.86037 -12.61792 -12.33810 -12.14424 -12.01611 -11.83339 -11.76280 -11.14664 -11.00813 -10.48947 -9.55076 -9.30557 -8.12085 -6.25830 0.19682 0.31689 1.12775 1.40575 1.42208 1.51926 2.40500 2.62511 3.16101 3.30435 3.87364 3.98814 4.15679 4.49225 4.60524 4.74747 4.77239 4.82051 4.91414 5.06608 5.19337 5.27343 5.30396 5.40641 5.45670 5.62714 5.80133 5.97359 6.05118 6.31416 6.81521 6.86230 7.42168 8.92405 Molecular weight = 240.07amu Principal moments of inertia in cm(-1) A = 0.026366 B = 0.007360 C = 0.006503 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1061.724901 B = 3803.414149 C = 4304.717858 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C -0.127 4.127 3 C 0.122 3.878 4 O -0.494 6.494 5 C -0.157 4.157 6 C -0.032 4.032 7 C 0.073 3.927 8 H 0.012 0.988 9 C -0.123 4.123 10 C -0.524 4.524 11 H 0.050 0.950 12 C 0.018 3.982 13 N -0.914 5.914 14 Si 0.951 3.049 15 H -0.277 1.277 16 H -0.280 1.280 17 H -0.270 1.270 18 C -0.117 4.117 19 C -0.026 4.026 20 Cl -0.062 7.062 21 H 0.087 0.913 22 H 0.080 0.920 23 H 0.071 0.929 24 H 0.410 0.590 25 H 0.129 0.871 26 H 0.061 0.939 27 H 0.028 0.972 28 H 0.032 0.968 29 H 0.263 0.737 30 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.262 0.660 3.572 14.717 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.129 4.129 3 C 0.077 3.923 4 O -0.307 6.307 5 C -0.175 4.175 6 C -0.032 4.032 7 C 0.054 3.946 8 H 0.030 0.970 9 C -0.181 4.181 10 C -0.562 4.562 11 H 0.068 0.932 12 C -0.181 4.181 13 N -0.554 5.554 14 Si 0.776 3.224 15 H -0.203 1.203 16 H -0.206 1.206 17 H -0.195 1.195 18 C -0.136 4.136 19 C -0.052 4.052 20 Cl -0.033 7.033 21 H 0.106 0.894 22 H 0.099 0.901 23 H 0.090 0.910 24 H 0.269 0.731 25 H 0.147 0.853 26 H 0.080 0.920 27 H 0.047 0.953 28 H 0.051 0.949 29 H 0.072 0.928 30 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -14.131 0.490 3.006 14.455 hybrid contribution 0.862 -0.462 -0.285 1.019 sum -13.268 0.028 2.721 13.544 Atomic orbital electron populations 1.20709 0.87914 1.03763 1.03616 1.20125 0.98456 0.90300 1.03997 1.17935 0.88782 0.85176 1.00455 1.84738 1.75917 1.34731 1.35287 1.21556 0.93934 0.98517 1.03531 1.20206 0.97256 0.92005 0.93738 1.17769 0.86042 0.96038 0.94729 0.96989 1.21641 1.02676 0.98160 0.95583 1.21356 0.91791 1.36515 1.06532 0.93182 1.25656 0.97080 0.96238 0.99141 1.69990 1.02267 1.46470 1.36628 0.85662 0.77786 0.78913 0.79998 1.20286 1.20586 1.19456 1.20888 0.91777 0.99048 1.01915 1.20655 0.91628 0.87031 1.05919 1.98316 1.76432 1.31667 1.96932 0.89446 0.90139 0.90997 0.73140 0.85342 0.91968 0.95278 0.94896 0.92787 0.85992 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.29 9.39 71.24 0.67 -1.62 16 2 C -0.13 -3.81 5.90 -19.75 -0.12 -3.92 16 3 C 0.12 3.78 6.68 22.50 0.15 3.93 16 4 O -0.49 -12.18 12.55 -92.43 -1.16 -13.34 16 5 C -0.16 -5.81 9.61 22.37 0.21 -5.60 16 6 C -0.03 -1.34 4.73 -19.88 -0.09 -1.43 16 7 C 0.07 3.61 2.48 -12.28 -0.03 3.58 16 8 H 0.01 0.65 7.87 -2.39 -0.02 0.63 16 9 C -0.12 -5.85 8.78 71.98 0.63 -5.21 16 10 C -0.52 -28.58 8.24 25.60 0.21 -28.37 16 11 H 0.05 2.75 7.60 -2.91 -0.02 2.73 16 12 C 0.02 0.98 5.30 84.65 0.45 1.43 16 13 N -0.91 -51.83 11.32 21.45 0.24 -51.59 16 14 Si 0.95 43.46 29.54 68.60 2.03 45.49 16 15 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 16 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 17 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 18 C -0.12 -4.63 8.49 22.31 0.19 -4.44 16 19 C -0.03 -0.86 6.31 22.31 0.14 -0.72 16 20 Cl -0.06 -1.78 27.29 -2.72 -0.07 -1.86 16 21 H 0.09 1.58 8.14 -2.39 -0.02 1.56 16 22 H 0.08 1.65 7.53 -2.39 -0.02 1.63 16 23 H 0.07 1.56 6.90 -2.38 -0.02 1.54 16 24 H 0.41 5.71 9.06 -74.06 -0.67 5.04 16 25 H 0.13 4.63 7.94 -2.91 -0.02 4.60 16 26 H 0.06 3.27 6.07 -2.39 -0.01 3.26 16 27 H 0.03 1.22 8.14 -2.39 -0.02 1.20 16 28 H 0.03 1.49 7.38 -2.39 -0.02 1.47 16 29 H 0.26 14.17 8.31 -92.71 -0.77 13.40 16 30 H 0.12 5.03 7.57 -2.91 -0.02 5.01 16 Total: -1.00 -60.47 270.46 3.94 -56.53 By element: Atomic # 1 Polarization: 6.65 SS G_CDS: 0.49 Total: 7.14 kcal Atomic # 6 Polarization: -44.78 SS G_CDS: 2.42 Total: -42.37 kcal Atomic # 7 Polarization: -51.83 SS G_CDS: 0.24 Total: -51.59 kcal Atomic # 8 Polarization: -12.18 SS G_CDS: -1.16 Total: -13.34 kcal Atomic # 14 Polarization: 43.46 SS G_CDS: 2.03 Total: 45.49 kcal Atomic # 17 Polarization: -1.78 SS G_CDS: -0.07 Total: -1.86 kcal Total: -60.47 3.94 -56.53 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259931488.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.541 kcal (2) G-P(sol) polarization free energy of solvation -60.469 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.010 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.938 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.532 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.072 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds