Wall clock time and date at job start Thu Apr 9 2020 15:11:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38173 * 119.96344 * 2 1 4 4 C 1.38719 * 119.97119 * 179.97438 * 3 2 1 5 5 O 1.35902 * 120.05282 * 180.29435 * 4 3 2 6 6 C 1.38735 * 119.90102 * 0.02789 * 4 3 2 7 7 C 1.50702 * 120.03195 * 180.02562 * 6 4 3 8 8 H 1.08996 * 109.47667 * 359.97438 * 7 6 4 9 9 C 1.53004 * 109.46802 * 239.99722 * 7 6 4 10 10 C 1.50696 * 109.46941 * 119.99998 * 7 6 4 11 11 H 1.07998 * 120.00352 * 359.97438 * 10 7 6 12 12 C 1.37880 * 119.99824 * 179.97438 * 10 7 6 13 13 N 1.31514 * 120.00002 * 359.97438 * 12 10 7 14 14 Si 1.86809 * 119.99898 * 180.02562 * 12 10 7 15 15 H 1.48501 * 109.46940 * 359.97438 * 14 12 10 16 16 H 1.48491 * 109.47120 * 119.99798 * 14 12 10 17 17 H 1.48497 * 109.46707 * 239.99928 * 14 12 10 18 18 C 1.38235 * 119.92797 * 359.97438 * 6 4 3 19 19 Cl 1.73601 * 119.98017 * 180.02562 * 18 6 4 20 20 C 1.38223 * 119.96824 * 179.97438 * 2 1 3 21 21 H 1.08999 * 109.47607 * 269.99932 * 1 2 3 22 22 H 1.09001 * 109.47116 * 30.00056 * 1 2 3 23 23 H 1.09000 * 109.46995 * 150.00168 * 1 2 3 24 24 H 1.07999 * 120.01981 * 359.97438 * 3 2 1 25 25 H 0.96696 * 114.00402 * 269.73131 * 5 4 3 26 26 H 1.09003 * 109.47416 * 300.00155 * 9 7 6 27 27 H 1.08994 * 109.47093 * 60.00371 * 9 7 6 28 28 H 1.09001 * 109.47227 * 180.02562 * 9 7 6 29 29 H 0.96997 * 119.99477 * 179.97438 * 13 12 10 30 30 H 1.07995 * 119.94676 * 0.02970 * 20 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1971 1.1971 0.0000 4 6 3.5843 1.1972 0.0005 5 8 4.2647 2.3736 0.0066 6 6 4.2760 -0.0053 0.0005 7 6 5.7830 -0.0086 0.0017 8 1 6.1487 1.0182 0.0020 9 6 6.2924 -0.7304 -1.2476 10 6 6.2828 -0.7207 1.2321 11 1 5.5796 -1.1296 1.9425 12 6 7.6380 -0.8501 1.4511 13 7 8.4943 -0.3526 0.5858 14 14 8.2576 -1.7334 2.9760 15 1 7.1009 -2.1974 3.7836 16 1 9.0799 -2.9018 2.5715 17 1 9.0843 -0.8027 3.7855 18 6 3.5814 -1.2005 0.0004 19 17 4.4457 -2.7061 0.0011 20 6 2.1974 -1.1974 0.0005 21 1 -0.3634 0.0000 1.0276 22 1 -0.3633 0.8900 -0.5138 23 1 -0.3633 -0.8900 -0.5138 24 1 1.6568 2.1322 -0.0004 25 1 4.4656 2.7164 -0.8750 26 1 5.9268 -1.7573 -1.2483 27 1 5.9309 -0.2154 -2.1375 28 1 7.3824 -0.7332 -1.2466 29 1 9.4476 -0.4434 0.7400 30 1 1.6561 -2.1319 0.0005 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259935806.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 15:11:41 Heat of formation + Delta-G solvation = -55.477326 kcal Electronic energy + Delta-G solvation = -15205.508736 eV Core-core repulsion = 12604.632025 eV Total energy + Delta-G solvation = -2600.876711 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 240.066 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.93734 -37.95313 -37.14114 -36.24901 -33.68379 -31.39715 -30.66517 -27.41004 -27.08370 -23.71747 -23.17780 -21.42138 -18.87100 -18.40306 -17.23055 -16.87754 -16.34053 -15.92934 -15.27636 -14.67791 -14.54607 -14.35616 -13.74653 -13.48958 -13.27312 -13.09313 -12.88443 -12.63738 -12.50126 -12.35353 -12.21828 -12.08905 -11.62619 -11.31546 -11.04932 -10.73019 -10.29871 -9.46617 -9.20655 -8.04534 -6.12821 0.25438 0.39386 1.37191 1.39540 1.46167 1.50524 2.43774 2.66203 3.24064 3.38838 3.96147 4.16822 4.22974 4.45891 4.51272 4.82508 4.92629 4.93998 4.97797 5.12712 5.23052 5.29303 5.39153 5.50363 5.56835 5.66638 5.88680 6.01848 6.11563 6.38978 6.90463 6.91198 7.50556 9.00851 Molecular weight = 240.07amu Principal moments of inertia in cm(-1) A = 0.028054 B = 0.009144 C = 0.008109 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 997.836230 B = 3061.491226 C = 3452.167577 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C -0.076 4.076 3 C -0.142 4.142 4 C 0.094 3.906 5 O -0.503 6.503 6 C -0.097 4.097 7 C 0.079 3.921 8 H 0.014 0.986 9 C -0.139 4.139 10 C -0.492 4.492 11 H 0.046 0.954 12 C 0.015 3.985 13 N -0.919 5.919 14 Si 0.940 3.060 15 H -0.270 1.270 16 H -0.280 1.280 17 H -0.281 1.281 18 C -0.027 4.027 19 Cl -0.065 7.065 20 C -0.128 4.128 21 H 0.081 0.919 22 H 0.083 0.917 23 H 0.081 0.919 24 H 0.154 0.846 25 H 0.401 0.599 26 H 0.054 0.946 27 H 0.016 0.984 28 H 0.056 0.944 29 H 0.258 0.742 30 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.858 0.420 -3.476 15.265 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.077 4.077 3 C -0.160 4.160 4 C 0.050 3.950 5 O -0.314 6.314 6 C -0.098 4.098 7 C 0.060 3.940 8 H 0.032 0.968 9 C -0.197 4.197 10 C -0.531 4.531 11 H 0.064 0.936 12 C -0.182 4.182 13 N -0.560 5.560 14 Si 0.767 3.233 15 H -0.195 1.195 16 H -0.206 1.206 17 H -0.207 1.207 18 C -0.054 4.054 19 Cl -0.036 7.036 20 C -0.146 4.146 21 H 0.099 0.901 22 H 0.102 0.898 23 H 0.100 0.900 24 H 0.171 0.829 25 H 0.259 0.741 26 H 0.073 0.927 27 H 0.035 0.965 28 H 0.075 0.925 29 H 0.068 0.932 30 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -14.630 0.240 -2.895 14.916 hybrid contribution 1.292 -0.415 0.277 1.385 sum -13.338 -0.175 -2.617 13.593 Atomic orbital electron populations 1.20800 0.87350 1.04296 1.03482 1.19982 0.98064 0.90899 0.98735 1.21525 0.91984 0.99825 1.02657 1.18408 0.90430 0.84517 1.01680 1.84787 1.76766 1.35197 1.34691 1.20759 0.98606 0.92017 0.98452 1.17585 0.85602 0.96102 0.94691 0.96796 1.21927 1.02506 1.00223 0.95054 1.21194 0.91367 1.34699 1.05794 0.93603 1.25535 0.97174 0.96691 0.98848 1.70008 1.01891 1.47399 1.36680 0.85763 0.78357 0.78608 0.80622 1.19481 1.20571 1.20742 1.20774 0.92497 0.86795 1.05298 1.98313 1.77559 1.31231 1.96458 1.21174 0.90694 1.00047 1.02733 0.90065 0.89780 0.90028 0.82866 0.74140 0.92693 0.96457 0.92484 0.93242 0.83249 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.70 10.01 71.23 0.71 -0.98 16 2 C -0.08 -2.02 5.88 -19.88 -0.12 -2.13 16 3 C -0.14 -4.15 9.64 22.37 0.22 -3.93 16 4 C 0.09 3.57 6.68 22.50 0.15 3.72 16 5 O -0.50 -18.44 12.27 -92.44 -1.13 -19.57 16 6 C -0.10 -4.26 4.75 -19.75 -0.09 -4.35 16 7 C 0.08 4.07 2.34 -12.29 -0.03 4.05 16 8 H 0.01 0.79 6.99 -2.39 -0.02 0.78 16 9 C -0.14 -6.98 8.72 71.98 0.63 -6.35 16 10 C -0.49 -27.75 6.83 25.60 0.17 -27.58 16 11 H 0.05 2.63 7.27 -2.91 -0.02 2.61 16 12 C 0.02 0.86 5.30 84.66 0.45 1.31 16 13 N -0.92 -54.30 11.32 21.45 0.24 -54.06 16 14 Si 0.94 45.46 29.54 68.60 2.03 47.49 16 15 H -0.27 -12.85 7.11 99.48 0.71 -12.14 16 16 H -0.28 -13.21 7.11 99.48 0.71 -12.50 16 17 H -0.28 -13.36 7.11 99.48 0.71 -12.65 16 18 C -0.03 -1.07 5.93 22.31 0.13 -0.93 16 19 Cl -0.06 -2.65 23.57 -2.72 -0.06 -2.72 16 20 C -0.13 -3.94 9.48 22.31 0.21 -3.73 16 21 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 22 H 0.08 1.11 8.08 -2.39 -0.02 1.09 16 23 H 0.08 1.12 8.08 -2.39 -0.02 1.10 16 24 H 0.15 3.51 8.06 -2.91 -0.02 3.49 16 25 H 0.40 10.78 9.06 -74.06 -0.67 10.11 16 26 H 0.05 2.64 4.94 -2.39 -0.01 2.63 16 27 H 0.02 0.75 8.14 -2.39 -0.02 0.73 16 28 H 0.06 3.16 6.07 -2.39 -0.01 3.15 16 29 H 0.26 14.55 8.31 -92.71 -0.77 13.78 16 30 H 0.15 3.76 8.06 -2.91 -0.02 3.74 16 Total: -1.00 -66.69 264.79 4.00 -62.70 By element: Atomic # 1 Polarization: 6.60 SS G_CDS: 0.49 Total: 7.09 kcal Atomic # 6 Polarization: -43.36 SS G_CDS: 2.43 Total: -40.93 kcal Atomic # 7 Polarization: -54.30 SS G_CDS: 0.24 Total: -54.06 kcal Atomic # 8 Polarization: -18.44 SS G_CDS: -1.13 Total: -19.57 kcal Atomic # 14 Polarization: 45.46 SS G_CDS: 2.03 Total: 47.49 kcal Atomic # 17 Polarization: -2.65 SS G_CDS: -0.06 Total: -2.72 kcal Total: -66.69 4.00 -62.70 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259935806.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.220 kcal (2) G-P(sol) polarization free energy of solvation -66.693 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.473 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.996 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.698 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.477 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds