Wall clock time and date at job start Thu Apr 9 2020 15:11:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38180 * 119.96544 * 2 1 4 4 C 1.38713 * 119.96776 * 179.70650 * 3 2 1 5 5 O 1.35899 * 120.04767 * 180.30042 * 4 3 2 6 6 C 1.38735 * 119.90340 * 0.55520 * 4 3 2 7 7 C 1.50700 * 120.03173 * 179.72311 * 6 4 3 8 8 H 1.08994 * 109.47551 * 359.72354 * 7 6 4 9 9 C 1.52996 * 109.47211 * 119.72852 * 7 6 4 10 10 C 1.50702 * 109.46869 * 239.72409 * 7 6 4 11 11 H 1.08002 * 120.00299 * 0.02562 * 10 7 6 12 12 C 1.37884 * 119.99942 * 179.72213 * 10 7 6 13 13 N 1.31514 * 119.99698 * 0.28408 * 12 10 7 14 14 Si 1.86794 * 119.99837 * 180.27476 * 12 10 7 15 15 H 1.48496 * 109.47341 * 0.02562 * 14 12 10 16 16 H 1.48508 * 109.46983 * 120.00379 * 14 12 10 17 17 H 1.48503 * 109.47491 * 240.00192 * 14 12 10 18 18 C 1.38231 * 119.92911 * 359.44814 * 6 4 3 19 19 Cl 1.73608 * 119.98274 * 180.29742 * 18 6 4 20 20 C 1.38223 * 119.96602 * 179.97438 * 2 1 3 21 21 H 1.09004 * 109.46471 * 270.01629 * 1 2 3 22 22 H 1.08991 * 109.47577 * 30.01014 * 1 2 3 23 23 H 1.09001 * 109.47545 * 150.02177 * 1 2 3 24 24 H 1.07998 * 120.01264 * 359.97438 * 3 2 1 25 25 H 0.96701 * 114.00150 * 270.25493 * 5 4 3 26 26 H 1.09003 * 109.46851 * 299.99806 * 9 7 6 27 27 H 1.09003 * 109.47532 * 59.99881 * 9 7 6 28 28 H 1.09001 * 109.47094 * 179.97438 * 9 7 6 29 29 H 0.97005 * 119.99651 * 179.97438 * 13 12 10 30 30 H 1.07998 * 119.95212 * 359.97438 * 20 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1972 1.1971 0.0000 4 6 3.5843 1.1972 0.0062 5 8 4.2647 2.3735 0.0123 6 6 4.2760 -0.0054 0.0006 7 6 5.7830 -0.0087 0.0010 8 1 6.1486 1.0181 0.0010 9 6 6.2912 -0.7310 1.2503 10 6 6.2840 -0.7203 -1.2293 11 1 5.5815 -1.1290 -1.9406 12 6 7.6394 -0.8443 -1.4501 13 7 8.4949 -0.3463 -0.5842 14 14 8.2604 -1.7196 -2.9790 15 1 7.1046 -2.1845 -3.7871 16 1 9.0832 -0.7829 -3.7858 17 1 9.0872 -2.8868 -2.5798 18 6 3.5815 -1.2006 0.0006 19 17 4.4457 -2.7063 0.0015 20 6 2.1974 -1.1975 0.0005 21 1 -0.3632 0.0003 1.0277 22 1 -0.3634 0.8898 -0.5139 23 1 -0.3634 -0.8902 -0.5135 24 1 1.6568 2.1322 -0.0004 25 1 4.4621 2.7184 -0.8693 26 1 5.9287 -0.2163 2.1402 27 1 5.9256 -1.7579 1.2504 28 1 7.3812 -0.7338 1.2503 29 1 9.4485 -0.4339 -0.7394 30 1 1.6561 -2.1320 0.0014 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259935810.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 15:11:42 Heat of formation + Delta-G solvation = -55.707487 kcal Electronic energy + Delta-G solvation = -15207.185154 eV Core-core repulsion = 12606.298463 eV Total energy + Delta-G solvation = -2600.886692 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 240.066 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.93249 -37.94086 -37.13930 -36.24909 -33.68578 -31.39888 -30.65870 -27.41762 -27.08525 -23.71520 -23.19638 -21.40180 -18.84562 -18.42606 -17.18175 -16.89664 -16.36110 -15.92385 -15.27083 -14.64933 -14.55970 -14.36831 -13.77779 -13.49222 -13.27896 -13.01773 -12.89951 -12.63216 -12.46236 -12.37839 -12.27517 -12.07525 -11.65160 -11.29943 -11.04871 -10.72683 -10.30176 -9.46736 -9.20778 -8.03719 -6.13701 0.25449 0.39410 1.38573 1.41680 1.45724 1.52134 2.44333 2.64974 3.24436 3.42128 3.96169 4.16637 4.22957 4.45797 4.51269 4.81989 4.92789 4.93560 4.97999 5.11395 5.23447 5.28148 5.41017 5.49835 5.56669 5.66201 5.87226 6.00874 6.08949 6.37805 6.88511 6.91285 7.50752 9.01625 Molecular weight = 240.07amu Principal moments of inertia in cm(-1) A = 0.028048 B = 0.009144 C = 0.008115 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 998.051087 B = 3061.260384 C = 3449.371881 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C -0.076 4.076 3 C -0.141 4.141 4 C 0.094 3.906 5 O -0.504 6.504 6 C -0.096 4.096 7 C 0.079 3.921 8 H 0.014 0.986 9 C -0.139 4.139 10 C -0.492 4.492 11 H 0.051 0.949 12 C 0.015 3.985 13 N -0.920 5.920 14 Si 0.942 3.058 15 H -0.268 1.268 16 H -0.281 1.281 17 H -0.284 1.284 18 C -0.027 4.027 19 Cl -0.065 7.065 20 C -0.128 4.128 21 H 0.083 0.917 22 H 0.082 0.918 23 H 0.079 0.921 24 H 0.154 0.846 25 H 0.402 0.598 26 H 0.007 0.993 27 H 0.056 0.944 28 H 0.057 0.943 29 H 0.258 0.742 30 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.908 0.378 -0.131 14.913 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.077 4.077 3 C -0.160 4.160 4 C 0.049 3.951 5 O -0.316 6.316 6 C -0.098 4.098 7 C 0.060 3.940 8 H 0.032 0.968 9 C -0.197 4.197 10 C -0.531 4.531 11 H 0.069 0.931 12 C -0.182 4.182 13 N -0.561 5.561 14 Si 0.769 3.231 15 H -0.192 1.192 16 H -0.207 1.207 17 H -0.210 1.210 18 C -0.054 4.054 19 Cl -0.036 7.036 20 C -0.146 4.146 21 H 0.102 0.898 22 H 0.101 0.899 23 H 0.098 0.902 24 H 0.171 0.829 25 H 0.259 0.741 26 H 0.026 0.974 27 H 0.075 0.925 28 H 0.076 0.924 29 H 0.068 0.932 30 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -14.679 0.202 0.492 14.689 hybrid contribution 1.324 -0.416 -1.124 1.786 sum -13.355 -0.214 -0.632 13.372 Atomic orbital electron populations 1.20800 0.87345 1.04205 1.03576 1.19986 0.98068 0.90894 0.98738 1.21530 0.91983 0.99832 1.02618 1.18411 0.90435 0.84548 1.01691 1.84723 1.76809 1.35177 1.34859 1.20754 0.98593 0.92032 0.98386 1.17579 0.85641 0.96130 0.94609 0.96807 1.21915 1.02439 1.00141 0.95155 1.21211 0.91368 1.34974 1.05529 0.93052 1.25572 0.97223 0.96567 0.98878 1.70038 1.01975 1.47316 1.36750 0.85730 0.78393 0.78479 0.80511 1.19188 1.20667 1.21002 1.20771 0.92495 0.86771 1.05331 1.98313 1.77559 1.31223 1.96458 1.21175 0.90682 1.00051 1.02710 0.89798 0.89905 0.90162 0.82862 0.74057 0.97393 0.92532 0.92442 0.93247 0.83230 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.69 10.01 71.24 0.71 -0.98 16 2 C -0.08 -2.02 5.88 -19.88 -0.12 -2.13 16 3 C -0.14 -4.14 9.64 22.37 0.22 -3.92 16 4 C 0.09 3.55 6.68 22.50 0.15 3.70 16 5 O -0.50 -18.52 12.27 -92.42 -1.13 -19.65 16 6 C -0.10 -4.23 4.75 -19.75 -0.09 -4.33 16 7 C 0.08 4.09 2.34 -12.29 -0.03 4.06 16 8 H 0.01 0.79 6.99 -2.39 -0.02 0.77 16 9 C -0.14 -7.22 8.72 71.98 0.63 -6.59 16 10 C -0.49 -26.90 6.83 25.60 0.17 -26.73 16 11 H 0.05 2.81 7.28 -2.91 -0.02 2.79 16 12 C 0.02 0.85 5.31 84.66 0.45 1.30 16 13 N -0.92 -53.97 11.33 21.45 0.24 -53.73 16 14 Si 0.94 44.30 29.54 68.60 2.03 46.32 16 15 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 16 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 17 H -0.28 -13.23 7.11 99.48 0.71 -12.52 16 18 C -0.03 -1.07 5.93 22.31 0.13 -0.93 16 19 Cl -0.06 -2.64 23.58 -2.72 -0.06 -2.71 16 20 C -0.13 -3.93 9.48 22.31 0.21 -3.72 16 21 H 0.08 1.19 8.14 -2.38 -0.02 1.17 16 22 H 0.08 1.11 8.08 -2.39 -0.02 1.09 16 23 H 0.08 1.13 8.08 -2.39 -0.02 1.11 16 24 H 0.15 3.51 8.06 -2.91 -0.02 3.48 16 25 H 0.40 11.58 9.06 -74.06 -0.67 10.91 16 26 H 0.01 0.35 8.14 -2.39 -0.02 0.33 16 27 H 0.06 2.79 4.94 -2.39 -0.01 2.78 16 28 H 0.06 3.27 6.08 -2.39 -0.01 3.26 16 29 H 0.26 14.45 8.31 -92.70 -0.77 13.68 16 30 H 0.15 3.76 8.06 -2.91 -0.02 3.73 16 Total: -1.00 -65.17 264.82 4.00 -61.17 By element: Atomic # 1 Polarization: 8.37 SS G_CDS: 0.49 Total: 8.86 kcal Atomic # 6 Polarization: -42.70 SS G_CDS: 2.44 Total: -40.26 kcal Atomic # 7 Polarization: -53.97 SS G_CDS: 0.24 Total: -53.73 kcal Atomic # 8 Polarization: -18.52 SS G_CDS: -1.13 Total: -19.65 kcal Atomic # 14 Polarization: 44.30 SS G_CDS: 2.03 Total: 46.32 kcal Atomic # 17 Polarization: -2.64 SS G_CDS: -0.06 Total: -2.71 kcal Total: -65.17 4.00 -61.17 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259935810.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.463 kcal (2) G-P(sol) polarization free energy of solvation -65.167 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.704 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.997 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.170 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.707 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds