Wall clock time and date at job start Thu Apr 9 2020 15:11:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86796 * 119.99741 * 2 1 4 4 H 1.48496 * 109.47527 * 265.13523 * 3 2 1 5 5 H 1.48501 * 109.47239 * 25.13673 * 3 2 1 6 6 H 1.48502 * 109.47280 * 145.13509 * 3 2 1 7 7 C 1.37869 * 120.00258 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00284 * 350.08709 * 7 2 1 9 9 C 1.50701 * 120.00222 * 170.08372 * 7 2 1 10 10 C 1.50699 * 115.54600 * 88.72741 * 9 7 2 11 11 C 1.38268 * 119.97287 * 54.71877 * 10 9 7 12 12 C 1.38190 * 120.04943 * 180.25092 * 11 10 9 13 13 C 1.38453 * 119.98789 * 359.47142 * 12 11 10 14 14 F 1.35100 * 120.02785 * 180.25295 * 13 12 11 15 15 C 1.38548 * 119.93763 * 0.54851 * 13 12 11 16 16 Cl 1.73595 * 120.02251 * 179.74554 * 15 13 12 17 17 C 1.38220 * 119.96799 * 234.73467 * 10 9 7 18 18 C 1.53000 * 117.50184 * 234.39666 * 9 7 2 19 19 C 1.52998 * 117.49949 * 303.05859 * 9 7 2 20 20 H 0.96992 * 120.00000 * 0.02562 * 1 2 3 21 21 H 1.08001 * 119.97225 * 359.97438 * 11 10 9 22 22 H 1.08007 * 120.00351 * 179.74294 * 12 11 10 23 23 H 1.07996 * 119.99284 * 0.02562 * 17 10 9 24 24 H 1.08995 * 117.50023 * 215.00479 * 18 9 7 25 25 H 1.09006 * 117.49803 * 0.02562 * 18 9 7 26 26 H 1.08998 * 117.49950 * 359.97438 * 19 9 7 27 27 H 1.08997 * 117.49793 * 144.99451 * 19 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.5995 1.9871 -1.3950 5 1 1.3989 2.6802 0.5947 6 1 3.4915 1.4721 0.8003 7 6 2.0046 -1.1939 0.0005 8 1 1.4768 -2.1223 0.1620 9 6 3.4947 -1.2038 -0.2242 10 6 4.3399 -1.0603 1.0152 11 6 4.1640 -1.9300 2.0757 12 6 4.9346 -1.7966 3.2150 13 6 5.8909 -0.7983 3.2908 14 9 6.6482 -0.6704 4.4023 15 6 6.0664 0.0731 2.2281 16 17 7.2603 1.3297 2.3233 17 6 5.2898 -0.0592 1.0911 18 6 4.0339 -2.0910 -1.3481 19 6 4.0189 -0.5693 -1.5140 20 1 -0.4850 0.8400 -0.0004 21 1 3.4209 -2.7113 2.0152 22 1 4.7937 -2.4738 4.0446 23 1 5.4258 0.6200 0.2624 24 1 4.9998 -2.5709 -1.1910 25 1 3.3107 -2.6673 -1.9253 26 1 3.2859 -0.1452 -2.2002 27 1 4.9749 -0.0482 -1.4661 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259940349.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 15:11:44 Heat of formation + Delta-G solvation = -4.757530 kcal Electronic energy + Delta-G solvation = -14742.937903 eV Core-core repulsion = 12020.800262 eV Total energy + Delta-G solvation = -2722.137641 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 240.041 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -48.63420 -39.19053 -36.65455 -35.85982 -32.24296 -30.58262 -29.65544 -25.94933 -23.06430 -22.61675 -21.38105 -19.42859 -17.52127 -16.85816 -15.99869 -15.45841 -15.30674 -14.72550 -14.45653 -13.60438 -13.14950 -13.07442 -12.83325 -12.70765 -12.05540 -11.43075 -11.30049 -11.13951 -10.88638 -10.68260 -10.50738 -10.18559 -9.85088 -9.52481 -8.79470 -8.72118 -8.50824 -7.90558 -6.24845 -4.28884 1.40454 1.50247 2.26023 3.24375 3.34746 3.39791 3.87843 4.34381 4.42961 4.76674 4.98984 5.04409 5.31814 5.49574 5.66016 5.88587 5.90388 6.10789 6.14476 6.26233 6.38844 6.46323 6.61711 6.79463 6.99167 7.07090 7.23035 7.57467 8.32881 8.76850 9.38029 10.85606 Molecular weight = 240.04amu Principal moments of inertia in cm(-1) A = 0.026234 B = 0.009377 C = 0.008817 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1067.078858 B = 2985.189171 C = 3174.913535 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.085 3.915 3 Si 0.864 3.136 4 H -0.273 1.273 5 H -0.293 1.293 6 H -0.247 1.247 7 C -0.489 4.489 8 H 0.082 0.918 9 C 0.027 3.973 10 C -0.012 4.012 11 C -0.066 4.066 12 C -0.146 4.146 13 C 0.080 3.920 14 F -0.139 7.139 15 C -0.074 4.074 16 Cl -0.072 7.072 17 C -0.090 4.090 18 C -0.166 4.166 19 C -0.198 4.198 20 H 0.267 0.733 21 H 0.142 0.858 22 H 0.138 0.862 23 H 0.135 0.865 24 H 0.075 0.925 25 H 0.092 0.908 26 H 0.093 0.907 27 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.963 -1.029 2.967 11.404 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.524 5.524 2 C -0.119 4.119 3 Si 0.691 3.309 4 H -0.199 1.199 5 H -0.219 1.219 6 H -0.171 1.171 7 C -0.526 4.526 8 H 0.100 0.900 9 C 0.026 3.974 10 C -0.013 4.013 11 C -0.084 4.084 12 C -0.165 4.165 13 C 0.060 3.940 14 F -0.117 7.117 15 C -0.101 4.101 16 Cl -0.043 7.043 17 C -0.109 4.109 18 C -0.203 4.203 19 C -0.235 4.235 20 H 0.077 0.923 21 H 0.160 0.840 22 H 0.156 0.844 23 H 0.153 0.847 24 H 0.093 0.907 25 H 0.111 0.889 26 H 0.111 0.889 27 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 10.914 -0.791 3.023 11.353 hybrid contribution 0.543 1.263 0.251 1.397 sum 11.458 0.472 3.274 11.926 Atomic orbital electron populations 1.69894 1.06465 1.27525 1.48511 1.24944 0.94515 0.99132 0.93300 0.87073 0.81340 0.83287 0.79246 1.19884 1.21945 1.17103 1.20138 0.86391 0.95069 1.50954 0.90028 1.18198 0.94463 1.01231 0.83532 1.19988 0.91696 0.92251 0.97408 1.20982 0.97299 0.99070 0.91080 1.21079 0.96609 0.98558 1.00275 1.17297 0.94959 0.98424 0.83346 1.91469 1.74436 1.95582 1.50253 1.20897 0.97777 0.94528 0.96902 1.98336 1.55923 1.51612 1.98418 1.20963 0.94604 0.99067 0.96274 1.22881 1.00852 0.92636 1.03955 1.23080 1.01339 0.95779 1.03346 0.92283 0.84043 0.84426 0.84714 0.90682 0.88940 0.88876 0.90639 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.73 13.96 55.43 0.77 -24.96 15 2 C 0.09 2.31 5.46 -17.82 -0.10 2.21 15 3 Si 0.86 20.48 25.44 -169.99 -4.32 16.16 15 4 H -0.27 -6.31 7.09 56.52 0.40 -5.91 15 5 H -0.29 -7.15 7.11 56.52 0.40 -6.75 15 6 H -0.25 -5.54 4.59 56.52 0.26 -5.28 15 7 C -0.49 -12.56 9.12 -34.44 -0.31 -12.87 15 8 H 0.08 2.27 8.06 -52.48 -0.42 1.85 15 9 C 0.03 0.57 1.11 -156.81 -0.17 0.39 15 10 C -0.01 -0.24 4.65 -104.62 -0.49 -0.73 15 11 C -0.07 -1.17 9.45 -39.59 -0.37 -1.55 15 12 C -0.15 -2.33 10.03 -39.52 -0.40 -2.73 15 13 C 0.08 1.36 7.28 -39.39 -0.29 1.07 15 14 F -0.14 -2.29 16.84 2.25 0.04 -2.26 15 15 C -0.07 -1.30 6.33 -39.44 -0.25 -1.55 15 16 Cl -0.07 -1.14 28.62 -51.86 -1.48 -2.63 15 17 C -0.09 -1.69 7.14 -39.56 -0.28 -1.97 15 18 C -0.17 -3.09 9.94 -26.69 -0.27 -3.35 15 19 C -0.20 -3.90 7.36 -26.69 -0.20 -4.09 15 20 H 0.27 7.34 8.31 -40.82 -0.34 7.00 15 21 H 0.14 2.40 8.06 -52.49 -0.42 1.98 15 22 H 0.14 1.78 8.06 -52.48 -0.42 1.36 15 23 H 0.14 2.44 6.22 -52.49 -0.33 2.12 15 24 H 0.07 1.23 8.14 -51.93 -0.42 0.81 15 25 H 0.09 1.72 8.14 -51.93 -0.42 1.30 15 26 H 0.09 1.94 7.57 -51.93 -0.39 1.55 15 27 H 0.08 1.33 6.58 -51.93 -0.34 0.99 15 LS Contribution 250.63 15.07 3.78 3.78 Total: -1.00 -27.27 250.63 -6.80 -34.07 By element: Atomic # 1 Polarization: 3.45 SS G_CDS: -2.45 Total: 1.00 kcal Atomic # 6 Polarization: -22.04 SS G_CDS: -3.12 Total: -25.17 kcal Atomic # 7 Polarization: -25.73 SS G_CDS: 0.77 Total: -24.96 kcal Atomic # 9 Polarization: -2.29 SS G_CDS: 0.04 Total: -2.26 kcal Atomic # 14 Polarization: 20.48 SS G_CDS: -4.32 Total: 16.16 kcal Atomic # 17 Polarization: -1.14 SS G_CDS: -1.48 Total: -2.63 kcal Total LS contribution 3.78 Total: 3.78 kcal Total: -27.27 -6.80 -34.07 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259940349.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.313 kcal (2) G-P(sol) polarization free energy of solvation -27.275 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.038 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.795 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.070 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.758 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds