Wall clock time and date at job start Thu Apr 9 2020 15:11:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86796 * 119.99741 * 2 1 4 4 H 1.48496 * 109.47527 * 265.13523 * 3 2 1 5 5 H 1.48501 * 109.47239 * 25.13673 * 3 2 1 6 6 H 1.48502 * 109.47280 * 145.13509 * 3 2 1 7 7 C 1.37869 * 120.00258 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00284 * 350.08709 * 7 2 1 9 9 C 1.50701 * 120.00222 * 170.08372 * 7 2 1 10 10 C 1.50699 * 115.54600 * 88.72741 * 9 7 2 11 11 C 1.38268 * 119.97287 * 54.71877 * 10 9 7 12 12 C 1.38190 * 120.04943 * 180.25092 * 11 10 9 13 13 C 1.38453 * 119.98789 * 359.47142 * 12 11 10 14 14 F 1.35100 * 120.02785 * 180.25295 * 13 12 11 15 15 C 1.38548 * 119.93763 * 0.54851 * 13 12 11 16 16 Cl 1.73595 * 120.02251 * 179.74554 * 15 13 12 17 17 C 1.38220 * 119.96799 * 234.73467 * 10 9 7 18 18 C 1.53000 * 117.50184 * 234.39666 * 9 7 2 19 19 C 1.52998 * 117.49949 * 303.05859 * 9 7 2 20 20 H 0.96992 * 120.00000 * 0.02562 * 1 2 3 21 21 H 1.08001 * 119.97225 * 359.97438 * 11 10 9 22 22 H 1.08007 * 120.00351 * 179.74294 * 12 11 10 23 23 H 1.07996 * 119.99284 * 0.02562 * 17 10 9 24 24 H 1.08995 * 117.50023 * 215.00479 * 18 9 7 25 25 H 1.09006 * 117.49803 * 0.02562 * 18 9 7 26 26 H 1.08998 * 117.49950 * 359.97438 * 19 9 7 27 27 H 1.08997 * 117.49793 * 144.99451 * 19 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.5995 1.9871 -1.3950 5 1 1.3989 2.6802 0.5947 6 1 3.4915 1.4721 0.8003 7 6 2.0046 -1.1939 0.0005 8 1 1.4768 -2.1223 0.1620 9 6 3.4947 -1.2038 -0.2242 10 6 4.3399 -1.0603 1.0152 11 6 4.1640 -1.9300 2.0757 12 6 4.9346 -1.7966 3.2150 13 6 5.8909 -0.7983 3.2908 14 9 6.6482 -0.6704 4.4023 15 6 6.0664 0.0731 2.2281 16 17 7.2603 1.3297 2.3233 17 6 5.2898 -0.0592 1.0911 18 6 4.0339 -2.0910 -1.3481 19 6 4.0189 -0.5693 -1.5140 20 1 -0.4850 0.8400 -0.0004 21 1 3.4209 -2.7113 2.0152 22 1 4.7937 -2.4738 4.0446 23 1 5.4258 0.6200 0.2624 24 1 4.9998 -2.5709 -1.1910 25 1 3.3107 -2.6673 -1.9253 26 1 3.2859 -0.1452 -2.2002 27 1 4.9749 -0.0482 -1.4661 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259940349.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 15:11:44 Heat of formation + Delta-G solvation = -18.697272 kcal Electronic energy + Delta-G solvation = -14743.542375 eV Core-core repulsion = 12020.800262 eV Total energy + Delta-G solvation = -2722.742113 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 240.041 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -49.94319 -40.62406 -38.07622 -37.26280 -34.26083 -31.93472 -31.05097 -27.88507 -24.50308 -24.05034 -22.87192 -21.07000 -18.94810 -18.57976 -17.37864 -17.00350 -16.75021 -16.41464 -15.88512 -14.92701 -14.78161 -14.70926 -14.42390 -14.09159 -13.57809 -13.11659 -12.97042 -12.56303 -12.41937 -12.13014 -11.96351 -11.88841 -11.66427 -11.11494 -10.71727 -10.46954 -9.88513 -9.33953 -8.31487 -6.37514 0.02840 0.14796 0.94677 1.35975 1.42891 1.51544 2.36751 2.49998 3.03554 3.09430 3.23015 3.72618 3.80281 4.15313 4.26742 4.36550 4.46326 4.68724 4.70303 4.84433 4.94657 5.05363 5.15489 5.28101 5.48686 5.64633 5.69980 5.82220 6.28976 6.70656 7.32643 8.82606 Molecular weight = 240.04amu Principal moments of inertia in cm(-1) A = 0.026234 B = 0.009377 C = 0.008817 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1067.078858 B = 2985.189171 C = 3174.913535 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.941 5.941 2 C 0.033 3.967 3 Si 0.914 3.086 4 H -0.262 1.262 5 H -0.306 1.306 6 H -0.225 1.225 7 C -0.480 4.480 8 H 0.044 0.956 9 C 0.005 3.995 10 C -0.028 4.028 11 C -0.075 4.075 12 C -0.132 4.132 13 C 0.079 3.921 14 F -0.135 7.135 15 C -0.080 4.080 16 Cl -0.057 7.057 17 C -0.096 4.096 18 C -0.149 4.149 19 C -0.195 4.195 20 H 0.265 0.735 21 H 0.142 0.858 22 H 0.170 0.830 23 H 0.140 0.860 24 H 0.104 0.896 25 H 0.086 0.914 26 H 0.076 0.924 27 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.447 -0.793 3.504 13.918 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.166 4.166 3 Si 0.739 3.261 4 H -0.187 1.187 5 H -0.233 1.233 6 H -0.148 1.148 7 C -0.518 4.518 8 H 0.062 0.938 9 C 0.004 3.996 10 C -0.029 4.029 11 C -0.093 4.093 12 C -0.150 4.150 13 C 0.059 3.941 14 F -0.113 7.113 15 C -0.107 4.107 16 Cl -0.028 7.028 17 C -0.115 4.115 18 C -0.186 4.186 19 C -0.232 4.232 20 H 0.074 0.926 21 H 0.160 0.840 22 H 0.187 0.813 23 H 0.158 0.842 24 H 0.122 0.878 25 H 0.104 0.896 26 H 0.095 0.905 27 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 13.434 -0.570 3.556 13.909 hybrid contribution -0.190 1.078 0.123 1.101 sum 13.244 0.508 3.679 13.755 Atomic orbital electron populations 1.70032 1.08258 1.28068 1.51632 1.25672 0.94966 1.02433 0.93532 0.86266 0.80720 0.79120 0.79985 1.18709 1.23329 1.14791 1.20295 0.89118 0.93317 1.49034 0.93787 1.18026 0.92223 1.04110 0.85198 1.19789 0.92627 0.93562 0.96887 1.21079 0.97716 0.99048 0.91443 1.21327 0.95099 0.98283 1.00337 1.17429 0.94998 0.98388 0.83296 1.91485 1.74318 1.95544 1.49981 1.20972 0.97953 0.95013 0.96768 1.98343 1.55188 1.50916 1.98369 1.20957 0.94785 0.98868 0.96897 1.22924 1.01763 0.92252 1.01648 1.23103 1.01921 0.96738 1.01430 0.92579 0.84035 0.81282 0.84195 0.87762 0.89582 0.90512 0.87987 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.39 13.96 21.45 0.30 -56.09 15 2 C 0.03 1.81 5.46 84.65 0.46 2.27 15 3 Si 0.91 42.02 25.44 68.60 1.75 43.76 15 4 H -0.26 -11.48 7.09 99.48 0.71 -10.77 15 5 H -0.31 -14.61 7.11 99.48 0.71 -13.90 15 6 H -0.23 -9.44 4.59 99.48 0.46 -8.98 15 7 C -0.48 -25.06 9.12 25.60 0.23 -24.82 15 8 H 0.04 2.55 8.06 -2.91 -0.02 2.53 15 9 C 0.01 0.22 1.11 -53.67 -0.06 0.16 15 10 C -0.03 -1.03 4.65 -19.86 -0.09 -1.12 15 11 C -0.07 -2.50 9.45 22.27 0.21 -2.29 15 12 C -0.13 -3.78 10.03 22.31 0.22 -3.56 15 13 C 0.08 2.42 7.28 22.39 0.16 2.59 15 14 F -0.13 -4.00 16.84 44.97 0.76 -3.24 15 15 C -0.08 -2.56 6.33 22.36 0.14 -2.42 15 16 Cl -0.06 -1.64 28.62 -2.72 -0.08 -1.72 15 17 C -0.10 -3.31 7.14 22.29 0.16 -3.15 15 18 C -0.15 -5.23 9.94 30.62 0.30 -4.93 15 19 C -0.19 -7.23 7.36 30.62 0.23 -7.00 15 20 H 0.27 15.11 8.31 -92.71 -0.77 14.34 15 21 H 0.14 4.66 8.06 -2.91 -0.02 4.63 15 22 H 0.17 3.71 8.06 -2.91 -0.02 3.69 15 23 H 0.14 4.58 6.22 -2.91 -0.02 4.56 15 24 H 0.10 3.07 8.14 -2.39 -0.02 3.05 15 25 H 0.09 3.11 8.14 -2.38 -0.02 3.09 15 26 H 0.08 3.10 7.57 -2.39 -0.02 3.08 15 27 H 0.10 3.23 6.58 -2.39 -0.02 3.22 15 Total: -1.00 -58.65 250.63 5.63 -53.01 By element: Atomic # 1 Polarization: 7.60 SS G_CDS: 0.94 Total: 8.53 kcal Atomic # 6 Polarization: -46.23 SS G_CDS: 1.97 Total: -44.26 kcal Atomic # 7 Polarization: -56.39 SS G_CDS: 0.30 Total: -56.09 kcal Atomic # 9 Polarization: -4.00 SS G_CDS: 0.76 Total: -3.24 kcal Atomic # 14 Polarization: 42.02 SS G_CDS: 1.75 Total: 43.76 kcal Atomic # 17 Polarization: -1.64 SS G_CDS: -0.08 Total: -1.72 kcal Total: -58.65 5.63 -53.01 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259940349.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.317 kcal (2) G-P(sol) polarization free energy of solvation -58.647 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.330 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.632 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.014 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.697 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds