Wall clock time and date at job start Thu Apr 9 2020 15:11:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38170 * 119.97682 * 2 1 4 4 C 1.38698 * 119.95359 * 180.02562 * 3 2 1 5 5 O 1.35917 * 120.04069 * 180.02562 * 4 3 2 6 6 C 1.38743 * 119.92020 * 359.97438 * 4 3 2 7 7 C 1.38127 * 119.95066 * 0.02562 * 6 4 3 8 8 C 1.50702 * 119.97248 * 179.97438 * 7 6 4 9 9 H 1.09002 * 109.47011 * 179.97438 * 8 7 6 10 10 C 1.53004 * 109.47377 * 60.00182 * 8 7 6 11 11 C 1.50697 * 109.47469 * 300.00017 * 8 7 6 12 12 H 1.08005 * 119.99985 * 5.61173 * 11 8 7 13 13 C 1.37881 * 120.00354 * 185.61960 * 11 8 7 14 14 N 1.31508 * 120.00074 * 197.60953 * 13 11 8 15 15 Si 1.86797 * 119.99976 * 17.59909 * 13 11 8 16 16 H 1.48502 * 109.47201 * 180.02562 * 15 13 11 17 17 H 1.48497 * 109.47208 * 300.00679 * 15 13 11 18 18 H 1.48508 * 109.47059 * 60.00269 * 15 13 11 19 19 C 1.38340 * 119.98077 * 180.25696 * 2 1 3 20 20 Cl 1.73605 * 119.95621 * 0.02562 * 19 2 1 21 21 H 1.09004 * 109.47397 * 89.99692 * 1 2 3 22 22 H 1.08999 * 109.47254 * 209.99754 * 1 2 3 23 23 H 1.09001 * 109.47268 * 329.99934 * 1 2 3 24 24 H 1.07996 * 120.02023 * 359.97438 * 3 2 1 25 25 H 0.96703 * 113.99872 * 269.97608 * 5 4 3 26 26 H 1.07998 * 120.02691 * 179.97438 * 6 4 3 27 27 H 1.08995 * 109.47036 * 186.17371 * 10 8 7 28 28 H 1.08996 * 109.46765 * 306.17461 * 10 8 7 29 29 H 1.09003 * 109.46742 * 66.17105 * 10 8 7 30 30 H 0.97010 * 119.99924 * 354.78384 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1973 1.1969 0.0000 4 6 3.5843 1.1963 -0.0005 5 8 4.2652 2.3726 0.0000 6 6 4.2759 -0.0065 -0.0005 7 6 3.5821 -1.2009 -0.0005 8 6 4.3327 -2.5076 -0.0011 9 1 3.6226 -3.3346 -0.0006 10 6 5.2127 -2.5910 1.2478 11 6 5.1985 -2.5891 -1.2319 12 1 5.2747 -1.7406 -1.8957 13 6 5.8932 -3.7471 -1.5107 14 7 6.8973 -3.7232 -2.3596 15 14 5.4082 -5.3496 -0.6825 16 1 6.3045 -6.4384 -1.1479 17 1 5.5315 -5.2029 0.7900 18 1 4.0032 -5.6815 -1.0309 19 6 2.1983 -1.1983 -0.0054 20 17 1.3286 -2.7008 -0.0128 21 1 -0.3634 0.0001 -1.0277 22 1 -0.3634 -0.8900 0.5138 23 1 -0.3634 0.8900 0.5138 24 1 1.6573 2.1321 -0.0004 25 1 4.4622 2.7134 -0.8833 26 1 5.3559 -0.0089 -0.0014 27 1 5.8366 -3.4830 1.1938 28 1 5.8472 -1.7066 1.3047 29 1 4.5809 -2.6425 2.1346 30 1 7.1017 -2.9094 -2.8464 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259944508.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 15:11:47 Heat of formation + Delta-G solvation = -63.340633 kcal Electronic energy + Delta-G solvation = -15059.435895 eV Core-core repulsion = 12458.218205 eV Total energy + Delta-G solvation = -2601.217690 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 240.066 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.99458 -38.40926 -37.11801 -36.43448 -34.09968 -32.12887 -30.14181 -27.86171 -26.78171 -24.31684 -23.00504 -20.99016 -19.47328 -18.80394 -17.68703 -17.31685 -16.21852 -15.87715 -15.13712 -14.94604 -14.60189 -14.34197 -14.08524 -13.85978 -13.44492 -13.25101 -13.20334 -12.88348 -12.45928 -12.31581 -12.00815 -11.98221 -11.69426 -11.58746 -11.18407 -10.97237 -10.37652 -9.65076 -9.37297 -8.70411 -6.34164 0.10045 0.32177 1.25645 1.45076 1.51913 1.70505 2.47278 2.51387 3.07198 3.23167 3.77625 3.84424 4.21643 4.37725 4.49748 4.54957 4.68827 4.76442 4.80347 4.89828 5.01546 5.11113 5.22473 5.29630 5.37802 5.43910 5.69593 5.73864 6.01453 6.07013 6.58366 6.77610 7.40326 8.65438 Molecular weight = 240.07amu Principal moments of inertia in cm(-1) A = 0.024223 B = 0.009850 C = 0.007704 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1155.627221 B = 2842.040288 C = 3633.735957 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.059 4.059 3 C -0.150 4.150 4 C 0.114 3.886 5 O -0.504 6.504 6 C -0.153 4.153 7 C -0.026 4.026 8 C 0.036 3.964 9 H 0.046 0.954 10 C -0.141 4.141 11 C -0.583 4.583 12 H 0.020 0.980 13 C -0.015 4.015 14 N -0.938 5.938 15 Si 1.071 2.929 16 H -0.289 1.289 17 H -0.241 1.241 18 H -0.265 1.265 19 C -0.072 4.072 20 Cl -0.069 7.069 21 H 0.085 0.915 22 H 0.072 0.928 23 H 0.095 0.905 24 H 0.165 0.835 25 H 0.409 0.591 26 H 0.113 0.887 27 H 0.049 0.951 28 H 0.041 0.959 29 H 0.050 0.950 30 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.803 8.234 6.058 16.383 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.060 4.060 3 C -0.168 4.168 4 C 0.069 3.931 5 O -0.317 6.317 6 C -0.172 4.172 7 C -0.027 4.027 8 C 0.017 3.983 9 H 0.064 0.936 10 C -0.198 4.198 11 C -0.621 4.621 12 H 0.039 0.961 13 C -0.214 4.214 14 N -0.575 5.575 15 Si 0.892 3.108 16 H -0.215 1.215 17 H -0.166 1.166 18 H -0.190 1.190 19 C -0.098 4.098 20 Cl -0.041 7.041 21 H 0.103 0.897 22 H 0.091 0.909 23 H 0.113 0.887 24 H 0.182 0.818 25 H 0.268 0.732 26 H 0.131 0.869 27 H 0.068 0.932 28 H 0.060 0.940 29 H 0.069 0.931 30 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -12.485 6.476 6.809 15.626 hybrid contribution 0.356 1.586 -1.269 2.062 sum -12.129 8.061 5.540 15.582 Atomic orbital electron populations 1.20914 0.87685 1.04465 1.03815 1.19932 0.98264 0.89984 0.97844 1.21330 0.92464 0.98619 1.04384 1.18528 0.90551 0.84799 0.99184 1.84725 1.76409 1.35183 1.35372 1.21185 1.00283 0.91561 1.04153 1.19922 0.91915 0.96624 0.94220 1.18261 0.94221 0.91325 0.94511 0.93582 1.22140 0.99508 1.01179 0.97018 1.22013 1.30601 1.00238 1.09243 0.96147 1.27018 0.91703 1.05237 0.97397 1.70997 1.25615 1.31731 1.29130 0.83752 0.76898 0.72347 0.77758 1.21509 1.16559 1.18982 1.20883 0.91511 0.87455 1.09964 1.98296 1.75604 1.33085 1.97066 0.89679 0.90924 0.88657 0.81758 0.73161 0.86882 0.93181 0.94000 0.93075 0.93891 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.32 9.61 71.24 0.68 -1.63 16 2 C -0.06 -1.72 5.88 -19.86 -0.12 -1.84 16 3 C -0.15 -4.08 9.64 22.36 0.22 -3.86 16 4 C 0.11 3.66 6.70 22.50 0.15 3.81 16 5 O -0.50 -13.72 13.50 -92.62 -1.25 -14.97 16 6 C -0.15 -6.08 8.52 22.36 0.19 -5.89 16 7 C -0.03 -1.09 4.75 -19.86 -0.09 -1.18 16 8 C 0.04 1.69 1.96 -12.28 -0.02 1.66 16 9 H 0.05 2.16 4.81 -2.39 -0.01 2.15 16 10 C -0.14 -6.15 8.77 71.98 0.63 -5.52 16 11 C -0.58 -32.94 8.53 25.60 0.22 -32.73 16 12 H 0.02 1.26 7.77 -2.91 -0.02 1.24 16 13 C -0.02 -0.90 5.29 84.66 0.45 -0.45 16 14 N -0.94 -58.88 13.69 21.45 0.29 -58.59 16 15 Si 1.07 50.29 26.29 68.60 1.80 52.10 16 16 H -0.29 -13.68 7.11 99.48 0.71 -12.97 16 17 H -0.24 -10.08 5.76 99.48 0.57 -9.50 16 18 H -0.26 -11.68 7.11 99.48 0.71 -10.97 16 19 C -0.07 -2.60 6.31 22.33 0.14 -2.46 16 20 Cl -0.07 -2.38 25.33 -2.72 -0.07 -2.45 16 21 H 0.08 1.59 8.14 -2.38 -0.02 1.57 16 22 H 0.07 1.53 6.91 -2.39 -0.02 1.51 16 23 H 0.09 1.44 8.08 -2.39 -0.02 1.43 16 24 H 0.16 3.26 8.06 -2.91 -0.02 3.24 16 25 H 0.41 7.23 9.06 -74.06 -0.67 6.55 16 26 H 0.11 4.88 7.54 -2.91 -0.02 4.86 16 27 H 0.05 2.23 4.89 -2.39 -0.01 2.22 16 28 H 0.04 1.81 7.19 -2.39 -0.02 1.79 16 29 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 30 H 0.25 16.01 8.73 -92.70 -0.81 15.20 16 Total: -1.00 -67.32 264.09 3.55 -63.78 By element: Atomic # 1 Polarization: 9.90 SS G_CDS: 0.32 Total: 10.22 kcal Atomic # 6 Polarization: -52.53 SS G_CDS: 2.45 Total: -50.09 kcal Atomic # 7 Polarization: -58.88 SS G_CDS: 0.29 Total: -58.59 kcal Atomic # 8 Polarization: -13.72 SS G_CDS: -1.25 Total: -14.97 kcal Atomic # 14 Polarization: 50.29 SS G_CDS: 1.80 Total: 52.10 kcal Atomic # 17 Polarization: -2.38 SS G_CDS: -0.07 Total: -2.45 kcal Total: -67.32 3.55 -63.78 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259944508.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.436 kcal (2) G-P(sol) polarization free energy of solvation -67.323 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.887 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.547 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.776 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.341 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds