Wall clock time and date at job start Thu Apr 9 2020 15:11:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 C 1.38165 * 119.97600 * 2 1 4 4 C 1.38699 * 119.95226 * 179.97438 * 3 2 1 5 5 O 1.35925 * 120.03860 * 179.97438 * 4 3 2 6 6 C 1.38739 * 119.91924 * 0.25317 * 4 3 2 7 7 C 1.38121 * 119.95467 * 359.49034 * 6 4 3 8 8 C 1.50699 * 119.97982 * 180.23558 * 7 6 4 9 9 H 1.08999 * 109.47599 * 180.27647 * 8 7 6 10 10 C 1.52999 * 109.47022 * 300.27533 * 8 7 6 11 11 C 1.50698 * 109.47440 * 60.27368 * 8 7 6 12 12 H 1.08004 * 119.99398 * 0.02562 * 11 8 7 13 13 C 1.37880 * 120.00437 * 179.97438 * 11 8 7 14 14 N 1.31518 * 119.99650 * 0.02562 * 13 11 8 15 15 Si 1.86793 * 119.99988 * 179.97438 * 13 11 8 16 16 H 1.48502 * 109.46855 * 90.00610 * 15 13 11 17 17 H 1.48501 * 109.47057 * 210.00084 * 15 13 11 18 18 H 1.48498 * 109.47490 * 330.00366 * 15 13 11 19 19 C 1.38345 * 119.97592 * 179.97438 * 2 1 3 20 20 Cl 1.73598 * 119.95917 * 359.97438 * 19 2 1 21 21 H 1.08995 * 109.46791 * 90.00307 * 1 2 3 22 22 H 1.09004 * 109.47120 * 209.99972 * 1 2 3 23 23 H 1.08999 * 109.47165 * 330.00087 * 1 2 3 24 24 H 1.07995 * 120.02057 * 359.95125 * 3 2 1 25 25 H 0.96705 * 113.99587 * 90.00069 * 5 4 3 26 26 H 1.07994 * 120.02530 * 179.72230 * 6 4 3 27 27 H 1.08996 * 109.47525 * 300.00108 * 10 8 7 28 28 H 1.09001 * 109.47095 * 60.00128 * 10 8 7 29 29 H 1.08998 * 109.47548 * 179.97438 * 10 8 7 30 30 H 0.96995 * 119.99673 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1974 1.1968 0.0000 4 6 3.5844 1.1963 0.0005 5 8 4.2653 2.3727 0.0000 6 6 4.2759 -0.0065 -0.0042 7 6 3.5822 -1.2009 0.0011 8 6 4.3328 -2.5076 0.0013 9 1 3.6227 -3.3346 0.0009 10 6 5.2127 -2.5905 -1.2476 11 6 5.1985 -2.5896 1.2320 12 1 5.2043 -1.7768 1.9432 13 6 5.9825 -3.7026 1.4507 14 7 5.9750 -4.6925 0.5849 15 14 7.0561 -3.8037 2.9759 16 1 6.2889 -4.4338 4.0804 17 1 8.2601 -4.6211 2.6804 18 1 7.4728 -2.4367 3.3796 19 6 2.1983 -1.1984 0.0005 20 17 1.3286 -2.7008 0.0019 21 1 -0.3633 -0.0001 -1.0276 22 1 -0.3633 -0.8900 0.5138 23 1 -0.3633 0.8900 0.5138 24 1 1.6574 2.1321 -0.0008 25 1 4.4620 2.7136 0.8833 26 1 5.3558 -0.0089 -0.0084 27 1 4.5866 -2.5313 -2.1378 28 1 5.9229 -1.7636 -1.2472 29 1 5.7560 -3.5355 -1.2473 30 1 6.5268 -5.4753 0.7386 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259944514.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 15:11:49 Heat of formation + Delta-G solvation = -43.468679 kcal Electronic energy + Delta-G solvation = -15000.456347 eV Core-core repulsion = 12400.100370 eV Total energy + Delta-G solvation = -2600.355977 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 240.066 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.51413 -36.98042 -35.52925 -34.66135 -32.13185 -30.24186 -28.28966 -26.54651 -25.15357 -22.67087 -21.57730 -19.40392 -17.45180 -16.43835 -16.18051 -15.54312 -14.85729 -14.51139 -13.65795 -13.16552 -12.84301 -12.67784 -12.53962 -12.16786 -11.75511 -11.60674 -11.37719 -10.94812 -10.94010 -10.62070 -10.50947 -10.36397 -10.20523 -10.00994 -9.37705 -8.99513 -8.35921 -8.08572 -7.83201 -6.02893 -4.09645 1.56683 1.80972 2.80912 3.28528 3.35322 3.37838 3.97751 4.41232 4.54082 5.15356 5.22820 5.28790 5.52717 5.74449 5.79759 5.95901 6.06586 6.21527 6.43375 6.66091 6.78132 6.81967 6.92525 7.06049 7.17458 7.31115 7.68431 7.89442 7.97305 8.05560 8.34011 8.91467 9.54204 11.02995 Molecular weight = 240.07amu Principal moments of inertia in cm(-1) A = 0.023183 B = 0.009009 C = 0.007423 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1207.488826 B = 3107.295568 C = 3771.156745 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.069 4.069 3 C -0.163 4.163 4 C 0.103 3.897 5 O -0.502 6.502 6 C -0.130 4.130 7 C -0.003 4.003 8 C 0.062 3.938 9 H 0.055 0.945 10 C -0.132 4.132 11 C -0.507 4.507 12 H 0.056 0.944 13 C 0.064 3.936 14 N -0.887 5.887 15 Si 0.893 3.107 16 H -0.280 1.280 17 H -0.286 1.286 18 H -0.274 1.274 19 C -0.054 4.054 20 Cl -0.070 7.070 21 H 0.070 0.930 22 H 0.072 0.928 23 H 0.064 0.936 24 H 0.125 0.875 25 H 0.386 0.614 26 H 0.136 0.864 27 H 0.009 0.991 28 H 0.028 0.972 29 H 0.088 0.912 30 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.457 8.829 -0.490 11.567 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.070 4.070 3 C -0.182 4.182 4 C 0.058 3.942 5 O -0.311 6.311 6 C -0.149 4.149 7 C -0.003 4.003 8 C 0.043 3.957 9 H 0.073 0.927 10 C -0.189 4.189 11 C -0.545 4.545 12 H 0.074 0.926 13 C -0.138 4.138 14 N -0.525 5.525 15 Si 0.720 3.280 16 H -0.207 1.207 17 H -0.212 1.212 18 H -0.199 1.199 19 C -0.081 4.081 20 Cl -0.041 7.041 21 H 0.089 0.911 22 H 0.091 0.909 23 H 0.083 0.917 24 H 0.143 0.857 25 H 0.241 0.759 26 H 0.154 0.846 27 H 0.028 0.972 28 H 0.047 0.953 29 H 0.107 0.893 30 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -7.485 8.451 -1.138 11.347 hybrid contribution 0.654 -0.091 1.368 1.519 sum -6.832 8.360 0.230 10.799 Atomic orbital electron populations 1.20804 0.90834 1.02933 1.02414 1.19481 0.96092 0.91114 1.00357 1.20911 0.93265 0.97195 1.06847 1.18537 0.89755 0.85164 1.00707 1.84792 1.76566 1.36519 1.33262 1.21288 1.01178 0.90277 1.02118 1.20493 0.90962 0.98307 0.90578 1.18112 0.94397 0.87952 0.95191 0.92668 1.21788 0.99013 1.03117 0.95028 1.21022 1.24541 1.03394 1.05581 0.92580 1.24929 0.96819 0.95558 0.96481 1.69884 1.40268 1.07254 1.35130 0.86582 0.80029 0.78064 0.83280 1.20659 1.21179 1.19927 1.20771 0.92315 0.86157 1.08826 1.98308 1.75909 1.32889 1.96970 0.91136 0.90921 0.91679 0.85717 0.75926 0.84594 0.97176 0.95298 0.89345 0.92885 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.46 9.61 36.01 0.35 -1.12 16 2 C -0.07 -1.15 5.88 -104.61 -0.62 -1.77 16 3 C -0.16 -2.59 9.64 -39.44 -0.38 -2.97 16 4 C 0.10 1.76 6.70 -39.23 -0.26 1.50 16 5 O -0.50 -7.43 13.50 -19.50 -0.26 -7.69 16 6 C -0.13 -2.59 8.66 -39.44 -0.34 -2.93 16 7 C 0.00 -0.06 4.74 -104.61 -0.50 -0.55 16 8 C 0.06 1.53 2.37 -92.93 -0.22 1.31 16 9 H 0.06 1.46 6.16 -51.93 -0.32 1.14 16 10 C -0.13 -3.19 8.78 37.16 0.33 -2.86 16 11 C -0.51 -13.60 8.25 -34.44 -0.28 -13.89 16 12 H 0.06 1.50 7.61 -52.48 -0.40 1.10 16 13 C 0.06 1.73 5.30 -17.82 -0.09 1.64 16 14 N -0.89 -24.91 11.32 55.43 0.63 -24.29 16 15 Si 0.89 21.02 29.54 -169.99 -5.02 15.99 16 16 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 17 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 18 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 19 C -0.05 -1.06 6.31 -39.49 -0.25 -1.31 16 20 Cl -0.07 -1.32 25.33 -51.86 -1.31 -2.63 16 21 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 22 H 0.07 0.95 6.90 -51.93 -0.36 0.59 16 23 H 0.06 0.70 8.08 -51.93 -0.42 0.28 16 24 H 0.12 1.64 8.06 -52.49 -0.42 1.21 16 25 H 0.39 3.81 9.06 45.56 0.41 4.22 16 26 H 0.14 2.77 7.56 -52.49 -0.40 2.37 16 27 H 0.01 0.21 8.14 -51.93 -0.42 -0.21 16 28 H 0.03 0.66 7.37 -51.93 -0.38 0.28 16 29 H 0.09 2.33 6.07 -51.93 -0.32 2.01 16 30 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 LS Contribution 268.71 15.07 4.05 4.05 Total: -1.00 -29.11 268.71 -6.77 -35.89 By element: Atomic # 1 Polarization: 4.21 SS G_CDS: -2.58 Total: 1.62 kcal Atomic # 6 Polarization: -20.68 SS G_CDS: -2.27 Total: -22.95 kcal Atomic # 7 Polarization: -24.91 SS G_CDS: 0.63 Total: -24.29 kcal Atomic # 8 Polarization: -7.43 SS G_CDS: -0.26 Total: -7.69 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 15.99 kcal Atomic # 17 Polarization: -1.32 SS G_CDS: -1.31 Total: -2.63 kcal Total LS contribution 4.05 Total: 4.05 kcal Total: -29.11 -6.77 -35.89 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259944514.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.582 kcal (2) G-P(sol) polarization free energy of solvation -29.113 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.695 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.774 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.887 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.469 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds