Wall clock time and date at job start Thu Apr 9 2020 15:11:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 C 1.38165 * 119.97600 * 2 1 4 4 C 1.38699 * 119.95226 * 179.97438 * 3 2 1 5 5 O 1.35925 * 120.03860 * 179.97438 * 4 3 2 6 6 C 1.38739 * 119.91924 * 0.25317 * 4 3 2 7 7 C 1.38121 * 119.95467 * 359.49034 * 6 4 3 8 8 C 1.50699 * 119.97982 * 180.23558 * 7 6 4 9 9 H 1.08999 * 109.47599 * 180.27647 * 8 7 6 10 10 C 1.52999 * 109.47022 * 300.27533 * 8 7 6 11 11 C 1.50698 * 109.47440 * 60.27368 * 8 7 6 12 12 H 1.08004 * 119.99398 * 0.02562 * 11 8 7 13 13 C 1.37880 * 120.00437 * 179.97438 * 11 8 7 14 14 N 1.31518 * 119.99650 * 0.02562 * 13 11 8 15 15 Si 1.86793 * 119.99988 * 179.97438 * 13 11 8 16 16 H 1.48502 * 109.46855 * 90.00610 * 15 13 11 17 17 H 1.48501 * 109.47057 * 210.00084 * 15 13 11 18 18 H 1.48498 * 109.47490 * 330.00366 * 15 13 11 19 19 C 1.38345 * 119.97592 * 179.97438 * 2 1 3 20 20 Cl 1.73598 * 119.95917 * 359.97438 * 19 2 1 21 21 H 1.08995 * 109.46791 * 90.00307 * 1 2 3 22 22 H 1.09004 * 109.47120 * 209.99972 * 1 2 3 23 23 H 1.08999 * 109.47165 * 330.00087 * 1 2 3 24 24 H 1.07995 * 120.02057 * 359.95125 * 3 2 1 25 25 H 0.96705 * 113.99587 * 90.00069 * 5 4 3 26 26 H 1.07994 * 120.02530 * 179.72230 * 6 4 3 27 27 H 1.08996 * 109.47525 * 300.00108 * 10 8 7 28 28 H 1.09001 * 109.47095 * 60.00128 * 10 8 7 29 29 H 1.08998 * 109.47548 * 179.97438 * 10 8 7 30 30 H 0.96995 * 119.99673 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1974 1.1968 0.0000 4 6 3.5844 1.1963 0.0005 5 8 4.2653 2.3727 0.0000 6 6 4.2759 -0.0065 -0.0042 7 6 3.5822 -1.2009 0.0011 8 6 4.3328 -2.5076 0.0013 9 1 3.6227 -3.3346 0.0009 10 6 5.2127 -2.5905 -1.2476 11 6 5.1985 -2.5896 1.2320 12 1 5.2043 -1.7768 1.9432 13 6 5.9825 -3.7026 1.4507 14 7 5.9750 -4.6925 0.5849 15 14 7.0561 -3.8037 2.9759 16 1 6.2889 -4.4338 4.0804 17 1 8.2601 -4.6211 2.6804 18 1 7.4728 -2.4367 3.3796 19 6 2.1983 -1.1984 0.0005 20 17 1.3286 -2.7008 0.0019 21 1 -0.3633 -0.0001 -1.0276 22 1 -0.3633 -0.8900 0.5138 23 1 -0.3633 0.8900 0.5138 24 1 1.6574 2.1321 -0.0008 25 1 4.4620 2.7136 0.8833 26 1 5.3558 -0.0089 -0.0084 27 1 4.5866 -2.5313 -2.1378 28 1 5.9229 -1.7636 -1.2472 29 1 5.7560 -3.5355 -1.2473 30 1 6.5268 -5.4753 0.7386 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259944514.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 15:11:49 Heat of formation + Delta-G solvation = -61.117994 kcal Electronic energy + Delta-G solvation = -15001.221679 eV Core-core repulsion = 12400.100370 eV Total energy + Delta-G solvation = -2601.121309 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 240.066 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.89137 -38.30530 -37.00636 -36.32965 -33.87173 -31.77126 -29.85961 -27.77970 -27.21875 -24.33175 -22.92291 -21.04994 -18.73963 -18.33144 -17.59118 -17.08087 -16.63106 -15.94033 -15.03466 -14.66139 -14.43708 -14.27639 -13.85056 -13.58488 -13.24270 -13.11483 -12.93582 -12.82118 -12.69640 -12.29466 -12.11856 -11.93456 -11.82982 -11.75184 -11.04020 -10.91143 -10.40358 -9.51130 -9.27123 -8.09014 -6.22146 0.18676 0.41263 1.36784 1.41175 1.42117 1.51688 2.41626 2.62833 3.19346 3.30423 3.88638 3.95011 4.30951 4.46489 4.65346 4.72930 4.83103 4.84356 4.90975 5.10801 5.22317 5.24168 5.37742 5.44040 5.46887 5.61073 5.83129 5.99589 6.04629 6.32897 6.84998 6.87134 7.44446 8.95945 Molecular weight = 240.07amu Principal moments of inertia in cm(-1) A = 0.023183 B = 0.009009 C = 0.007423 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1207.488826 B = 3107.295568 C = 3771.156745 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.062 4.062 3 C -0.152 4.152 4 C 0.115 3.885 5 O -0.503 6.503 6 C -0.151 4.151 7 C -0.030 4.030 8 C 0.062 3.938 9 H 0.032 0.968 10 C -0.122 4.122 11 C -0.518 4.518 12 H 0.051 0.949 13 C 0.015 3.985 14 N -0.915 5.915 15 Si 0.952 3.048 16 H -0.278 1.278 17 H -0.283 1.283 18 H -0.267 1.267 19 C -0.074 4.074 20 Cl -0.075 7.075 21 H 0.085 0.915 22 H 0.067 0.933 23 H 0.094 0.906 24 H 0.164 0.836 25 H 0.410 0.590 26 H 0.120 0.880 27 H 0.020 0.980 28 H 0.029 0.971 29 H 0.062 0.938 30 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.574 11.054 0.105 13.990 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.063 4.063 3 C -0.170 4.170 4 C 0.071 3.929 5 O -0.316 6.316 6 C -0.170 4.170 7 C -0.031 4.031 8 C 0.043 3.957 9 H 0.050 0.950 10 C -0.180 4.180 11 C -0.556 4.556 12 H 0.069 0.931 13 C -0.183 4.183 14 N -0.555 5.555 15 Si 0.778 3.222 16 H -0.204 1.204 17 H -0.208 1.208 18 H -0.192 1.192 19 C -0.101 4.101 20 Cl -0.046 7.046 21 H 0.104 0.896 22 H 0.086 0.914 23 H 0.113 0.887 24 H 0.181 0.819 25 H 0.269 0.731 26 H 0.138 0.862 27 H 0.039 0.961 28 H 0.049 0.951 29 H 0.081 0.919 30 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -8.601 10.696 -0.527 13.735 hybrid contribution 0.963 -0.677 1.162 1.654 sum -7.639 10.019 0.635 12.615 Atomic orbital electron populations 1.20901 0.87968 1.04230 1.03752 1.19915 0.98119 0.90074 0.98183 1.21300 0.92643 0.98375 1.04695 1.18506 0.90422 0.84857 0.99155 1.84732 1.76363 1.35139 1.35408 1.21209 1.00560 0.91189 1.04003 1.20214 0.91986 0.97270 0.93626 1.17925 0.93913 0.89374 0.94453 0.95007 1.21634 0.98971 1.01635 0.95723 1.21297 1.24842 1.03164 1.06295 0.93110 1.25678 0.98129 0.95338 0.99182 1.70011 1.41073 1.07696 1.36675 0.85638 0.78384 0.78230 0.79930 1.20363 1.20836 1.19198 1.20944 0.91800 0.87223 1.10108 1.98297 1.75706 1.33486 1.97073 0.89610 0.91386 0.88678 0.81879 0.73090 0.86192 0.96067 0.95150 0.91876 0.92933 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.48 9.61 71.24 0.68 -1.80 16 2 C -0.06 -1.88 5.88 -19.85 -0.12 -2.00 16 3 C -0.15 -4.21 9.64 22.36 0.22 -3.99 16 4 C 0.12 3.67 6.70 22.50 0.15 3.82 16 5 O -0.50 -13.30 13.50 -92.70 -1.25 -14.55 16 6 C -0.15 -5.96 8.66 22.36 0.19 -5.77 16 7 C -0.03 -1.31 4.74 -19.86 -0.09 -1.41 16 8 C 0.06 3.15 2.37 -12.29 -0.03 3.12 16 9 H 0.03 1.75 6.16 -2.39 -0.01 1.74 16 10 C -0.12 -6.10 8.78 71.98 0.63 -5.47 16 11 C -0.52 -28.43 8.25 25.60 0.21 -28.22 16 12 H 0.05 2.76 7.61 -2.91 -0.02 2.74 16 13 C 0.02 0.85 5.30 84.65 0.45 1.30 16 14 N -0.92 -52.77 11.32 21.45 0.24 -52.53 16 15 Si 0.95 43.55 29.54 68.60 2.03 45.58 16 16 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 17 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 18 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 19 C -0.07 -2.85 6.31 22.33 0.14 -2.71 16 20 Cl -0.07 -2.81 25.33 -2.72 -0.07 -2.88 16 21 H 0.09 1.69 8.14 -2.39 -0.02 1.67 16 22 H 0.07 1.59 6.90 -2.38 -0.02 1.58 16 23 H 0.09 1.56 8.08 -2.39 -0.02 1.54 16 24 H 0.16 3.31 8.06 -2.91 -0.02 3.28 16 25 H 0.41 6.65 9.06 -74.05 -0.67 5.98 16 26 H 0.12 4.99 7.56 -2.91 -0.02 4.97 16 27 H 0.02 0.95 8.14 -2.39 -0.02 0.93 16 28 H 0.03 1.44 7.37 -2.39 -0.02 1.42 16 29 H 0.06 3.45 6.07 -2.39 -0.01 3.44 16 30 H 0.26 14.35 8.31 -92.71 -0.77 13.58 16 Total: -1.00 -63.39 268.71 3.88 -59.52 By element: Atomic # 1 Polarization: 7.49 SS G_CDS: 0.49 Total: 7.98 kcal Atomic # 6 Polarization: -45.55 SS G_CDS: 2.44 Total: -43.11 kcal Atomic # 7 Polarization: -52.77 SS G_CDS: 0.24 Total: -52.53 kcal Atomic # 8 Polarization: -13.30 SS G_CDS: -1.25 Total: -14.55 kcal Atomic # 14 Polarization: 43.55 SS G_CDS: 2.03 Total: 45.58 kcal Atomic # 17 Polarization: -2.81 SS G_CDS: -0.07 Total: -2.88 kcal Total: -63.39 3.88 -59.52 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259944514.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.601 kcal (2) G-P(sol) polarization free energy of solvation -63.393 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.994 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.876 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.517 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.118 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds