Wall clock time and date at job start Thu Apr 9 2020 15:11:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47060 * 2 1 4 4 H 1.09008 * 109.47017 * 55.00082 * 3 2 1 5 5 C 1.50698 * 109.47721 * 175.00208 * 3 2 1 6 6 H 1.07995 * 120.00485 * 119.99509 * 5 3 2 7 7 C 1.37880 * 119.99796 * 300.00708 * 5 3 2 8 8 N 1.31514 * 119.99726 * 359.97438 * 7 5 3 9 9 Si 1.86799 * 120.00037 * 179.97438 * 7 5 3 10 10 H 1.48502 * 109.47052 * 89.99432 * 9 7 5 11 11 H 1.48501 * 109.46986 * 209.99427 * 9 7 5 12 12 H 1.48495 * 109.46873 * 329.99630 * 9 7 5 13 13 N 1.46504 * 109.47349 * 295.00344 * 3 2 1 14 14 C 1.39842 * 120.00158 * 84.99383 * 13 3 2 15 15 C 1.38870 * 120.06621 * 0.02562 * 14 13 3 16 16 C 1.38151 * 119.99477 * 179.97438 * 15 14 13 17 17 C 1.38261 * 120.12947 * 359.97438 * 16 15 14 18 18 C 1.38485 * 120.13166 * 0.02562 * 17 16 15 19 19 F 1.35099 * 119.99355 * 179.97438 * 18 17 16 20 20 C 1.38489 * 120.00991 * 359.74326 * 18 17 16 21 21 F 1.35091 * 120.06831 * 180.27838 * 20 18 17 22 22 H 1.08992 * 109.47399 * 59.99823 * 1 2 3 23 23 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.47194 * 299.99650 * 1 2 3 25 25 H 1.09002 * 109.47398 * 120.00169 * 2 1 3 26 26 H 1.09001 * 109.47194 * 240.00350 * 2 1 3 27 27 H 0.97005 * 120.00053 * 180.02562 * 8 7 5 28 28 H 0.97001 * 119.99585 * 265.00132 * 13 3 2 29 29 H 1.07998 * 120.00581 * 359.94956 * 15 14 13 30 30 H 1.08003 * 119.93093 * 180.02562 * 16 15 14 31 31 H 1.07995 * 119.93161 * 179.97438 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9815 0.8419 5 6 3.5419 1.4445 0.1238 6 1 4.1471 1.8890 -0.6523 7 6 4.1433 0.8785 1.2279 8 7 3.4062 0.3374 2.1731 9 14 6.0050 0.8802 1.3810 10 1 6.4427 2.1132 2.0836 11 1 6.4392 -0.3108 2.1544 12 1 6.6131 0.8398 0.0269 13 7 1.6524 2.0975 -1.2518 14 6 0.3893 2.6857 -1.3712 15 6 -0.4986 2.6501 -0.3040 16 6 -1.7458 3.2320 -0.4235 17 6 -2.1126 3.8510 -1.6041 18 6 -1.2315 3.8896 -2.6717 19 9 -1.5930 4.4947 -3.8243 20 6 0.0220 3.3122 -2.5565 21 9 0.8846 3.3541 -3.5953 22 1 -0.3634 0.5138 -0.8899 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3634 0.5138 0.8900 25 1 1.8934 -0.5139 0.8900 26 1 1.8934 -0.5138 -0.8900 27 1 3.8293 -0.0605 2.9501 28 1 2.2719 2.1232 -1.9978 29 1 -0.2142 2.1671 0.6192 30 1 -2.4353 3.2041 0.4074 31 1 -3.0886 4.3045 -1.6941 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000040230607.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 15:11:35 Heat of formation + Delta-G solvation = -68.377053 kcal Electronic energy + Delta-G solvation = -17303.612729 eV Core-core repulsion = 14220.787148 eV Total energy + Delta-G solvation = -3082.825582 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 241.097 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -48.98166 -48.02832 -38.97060 -35.98672 -32.90388 -31.38570 -29.65596 -29.02711 -26.36651 -23.26320 -22.59305 -21.93723 -19.65769 -17.95111 -17.28286 -16.58755 -16.07093 -15.87675 -15.18734 -14.76772 -14.54080 -14.52745 -13.95575 -13.70360 -13.34201 -12.85122 -12.41758 -11.98139 -11.56632 -11.44533 -11.41011 -11.24903 -10.97537 -10.82130 -10.42848 -10.25491 -9.83724 -9.50304 -9.11963 -8.56775 -8.29404 -6.78569 -6.26540 -4.35015 1.42056 1.74505 3.18072 3.25313 3.28082 3.94224 3.97268 4.26862 4.51620 4.84781 5.05739 5.16468 5.22939 5.62912 5.89916 6.09747 6.15959 6.26150 6.32061 6.36708 6.59546 6.71610 6.80185 6.84268 7.05536 7.15273 7.35589 7.56383 7.67976 7.92292 8.12401 8.47550 8.74075 9.32372 10.78996 Molecular weight = 241.10amu Principal moments of inertia in cm(-1) A = 0.035294 B = 0.006686 C = 0.006041 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 793.156682 B = 4186.770352 C = 4634.111880 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.134 4.134 3 C 0.271 3.729 4 H 0.045 0.955 5 C -0.534 4.534 6 H 0.062 0.938 7 C 0.068 3.932 8 N -0.885 5.885 9 Si 0.903 3.097 10 H -0.279 1.279 11 H -0.284 1.284 12 H -0.273 1.273 13 N -0.709 5.709 14 C 0.238 3.762 15 C -0.190 4.190 16 C -0.055 4.055 17 C -0.215 4.215 18 C 0.111 3.889 19 F -0.139 7.139 20 C -0.046 4.046 21 F -0.141 7.141 22 H 0.046 0.954 23 H 0.032 0.968 24 H 0.049 0.951 25 H 0.103 0.897 26 H 0.037 0.963 27 H 0.266 0.734 28 H 0.396 0.604 29 H 0.150 0.850 30 H 0.131 0.869 31 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.126 3.105 -3.645 9.432 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.173 4.173 3 C 0.169 3.831 4 H 0.062 0.938 5 C -0.573 4.573 6 H 0.080 0.920 7 C -0.135 4.135 8 N -0.522 5.522 9 Si 0.730 3.270 10 H -0.204 1.204 11 H -0.210 1.210 12 H -0.198 1.198 13 N -0.329 5.329 14 C 0.125 3.875 15 C -0.213 4.213 16 C -0.074 4.074 17 C -0.236 4.236 18 C 0.090 3.910 19 F -0.118 7.118 20 C -0.072 4.072 21 F -0.120 7.120 22 H 0.065 0.935 23 H 0.051 0.949 24 H 0.068 0.932 25 H 0.121 0.879 26 H 0.055 0.945 27 H 0.076 0.924 28 H 0.230 0.770 29 H 0.167 0.833 30 H 0.149 0.851 31 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -7.955 2.890 -3.331 9.095 hybrid contribution 1.311 0.065 -0.607 1.446 sum -6.644 2.955 -3.938 8.269 Atomic orbital electron populations 1.22222 0.98904 0.99549 1.00424 1.22050 0.92287 1.00056 1.02946 1.18890 0.94941 0.88906 0.80331 0.93761 1.21193 0.90536 1.39090 1.06436 0.91963 1.24857 0.98858 0.94518 0.95259 1.69851 1.35326 1.37650 1.09379 0.86418 0.84537 0.77732 0.78321 1.20449 1.20960 1.19802 1.45696 1.11331 1.57295 1.18573 1.17841 0.88091 0.90409 0.91197 1.21115 0.94094 1.06435 0.99612 1.20719 0.95664 0.94640 0.96388 1.20569 1.00510 1.09168 0.93372 1.17373 0.92778 0.97582 0.83269 1.91454 1.91838 1.81080 1.47439 1.17009 0.89710 1.13534 0.86967 1.91405 1.68819 1.95719 1.56074 0.93470 0.94854 0.93188 0.87911 0.94462 0.92413 0.76963 0.83272 0.85144 0.85155 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.85 8.22 37.16 0.31 -2.55 16 2 C -0.13 -2.95 5.45 -26.73 -0.15 -3.10 16 3 C 0.27 6.21 2.20 -69.08 -0.15 6.06 16 4 H 0.04 1.09 6.49 -51.92 -0.34 0.75 16 5 C -0.53 -13.58 8.73 -34.44 -0.30 -13.88 16 6 H 0.06 1.58 7.74 -52.49 -0.41 1.17 16 7 C 0.07 1.75 5.29 -17.82 -0.09 1.66 16 8 N -0.88 -23.17 11.29 55.43 0.63 -22.54 16 9 Si 0.90 20.08 29.54 -169.99 -5.02 15.06 16 10 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 11 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 12 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 13 N -0.71 -14.52 5.18 -53.23 -0.28 -14.79 16 14 C 0.24 4.45 5.49 -83.69 -0.46 3.99 16 15 C -0.19 -3.19 6.72 -39.38 -0.26 -3.46 16 16 C -0.05 -0.77 10.04 -39.60 -0.40 -1.17 16 17 C -0.21 -3.05 10.02 -39.48 -0.40 -3.44 16 18 C 0.11 1.84 7.30 -39.40 -0.29 1.56 16 19 F -0.14 -2.33 17.18 2.25 0.04 -2.29 16 20 C -0.05 -0.85 7.32 -39.20 -0.29 -1.14 16 21 F -0.14 -2.69 16.55 2.25 0.04 -2.65 16 22 H 0.05 0.86 5.39 -51.93 -0.28 0.58 16 23 H 0.03 0.57 8.14 -51.93 -0.42 0.14 16 24 H 0.05 0.88 6.35 -51.93 -0.33 0.55 16 25 H 0.10 2.51 5.95 -51.93 -0.31 2.20 16 26 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 27 H 0.27 6.66 8.31 -40.82 -0.34 6.32 16 28 H 0.40 8.01 8.03 -40.82 -0.33 7.68 16 29 H 0.15 2.61 4.01 -52.49 -0.21 2.40 16 30 H 0.13 1.41 8.06 -52.48 -0.42 0.99 16 31 H 0.13 1.51 8.06 -52.49 -0.42 1.08 16 LS Contribution 262.51 15.07 3.96 3.96 Total: -1.00 -25.66 262.51 -6.14 -31.80 By element: Atomic # 1 Polarization: 9.96 SS G_CDS: -3.03 Total: 6.94 kcal Atomic # 6 Polarization: -13.00 SS G_CDS: -2.48 Total: -15.48 kcal Atomic # 7 Polarization: -37.69 SS G_CDS: 0.35 Total: -37.34 kcal Atomic # 9 Polarization: -5.02 SS G_CDS: 0.08 Total: -4.94 kcal Atomic # 14 Polarization: 20.08 SS G_CDS: -5.02 Total: 15.06 kcal Total LS contribution 3.96 Total: 3.96 kcal Total: -25.66 -6.14 -31.80 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000040230607.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.577 kcal (2) G-P(sol) polarization free energy of solvation -25.656 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.234 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.143 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.800 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.377 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds