Wall clock time and date at job start Thu Apr 9 2020 15:13:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 109.47184 * 2 1 4 4 C 1.53008 * 109.46897 * 240.00259 * 2 1 3 5 5 C 1.52998 * 109.47305 * 120.00556 * 2 1 3 6 6 N 1.46905 * 109.47294 * 60.38224 * 5 2 1 7 7 C 1.47392 * 110.99704 * 86.50815 * 6 5 2 8 8 C 1.51039 * 111.55757 * 84.90624 * 7 6 5 9 9 O 1.43442 * 107.56318 * 94.02003 * 8 7 6 10 10 C 1.36614 * 117.84432 * 277.90411 * 9 8 7 11 11 C 1.54722 * 110.78436 * 61.03992 * 10 9 8 12 12 C 1.48031 * 110.99940 * 213.69270 * 6 5 2 13 13 H 1.08998 * 108.74849 * 313.30893 * 12 6 5 14 14 C 1.50699 * 108.75053 * 71.42098 * 12 6 5 15 15 H 1.07998 * 120.00243 * 3.59642 * 14 12 6 16 16 C 1.37874 * 119.99712 * 183.59973 * 14 12 6 17 17 N 1.31515 * 120.00423 * 0.02562 * 16 14 12 18 18 Si 1.86806 * 119.99857 * 180.02562 * 16 14 12 19 19 H 1.48498 * 109.47136 * 60.00092 * 18 16 14 20 20 H 1.48501 * 109.46792 * 179.97438 * 18 16 14 21 21 H 1.48498 * 109.46963 * 299.99633 * 18 16 14 22 22 H 1.08997 * 109.47029 * 299.99614 * 1 2 3 23 23 H 1.09000 * 109.47301 * 59.99453 * 1 2 3 24 24 H 1.08999 * 109.47073 * 179.97438 * 1 2 3 25 25 H 1.08999 * 109.47108 * 180.02562 * 3 2 1 26 26 H 1.08996 * 109.47459 * 299.99943 * 3 2 1 27 27 H 1.08997 * 109.46822 * 60.00259 * 3 2 1 28 28 H 1.08996 * 109.46958 * 308.21188 * 4 2 1 29 29 H 1.09001 * 109.46833 * 68.21005 * 4 2 1 30 30 H 1.08997 * 109.47179 * 188.21104 * 4 2 1 31 31 H 1.08997 * 109.46724 * 300.38100 * 5 2 1 32 32 H 1.08998 * 109.47128 * 180.38518 * 5 2 1 33 33 H 1.08993 * 109.06322 * 324.36485 * 7 6 5 34 34 H 1.09006 * 109.00255 * 205.40157 * 7 6 5 35 35 H 1.09002 * 109.83836 * 334.50404 * 8 7 6 36 36 H 1.08999 * 109.83937 * 213.53679 * 8 7 6 37 37 H 1.08995 * 109.21587 * 300.70105 * 10 9 8 38 38 H 1.09000 * 109.18174 * 181.34798 * 10 9 8 39 39 H 1.08996 * 109.53296 * 46.54061 * 11 10 9 40 40 H 1.09003 * 109.53420 * 166.77909 * 11 10 9 41 41 H 0.96994 * 120.00582 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2494 5 6 2.0400 -0.7214 1.2491 6 7 1.5580 -2.1090 1.2444 7 6 2.4710 -2.9828 0.4859 8 6 3.6140 -3.4700 1.3447 9 8 3.2389 -4.7464 1.8811 10 6 2.4429 -4.7630 2.9912 11 6 1.0861 -4.0770 2.7043 12 6 1.2955 -2.5841 2.6217 13 1 2.1419 -2.3135 3.2529 14 6 0.0637 -1.8924 3.1462 15 1 -0.4953 -1.2260 2.5061 16 6 -0.3495 -2.1102 4.4434 17 7 0.3315 -2.9213 5.2232 18 14 -1.8769 -1.2533 5.0935 19 1 -3.0509 -1.6442 4.2725 20 1 -2.1055 -1.6530 6.5053 21 1 -1.6885 0.2178 5.0193 22 1 -0.3633 0.5138 0.8900 23 1 -0.3634 0.5139 -0.8899 24 1 -0.3633 -1.0277 -0.0005 25 1 3.1300 1.4425 -0.0005 26 1 1.6767 1.9563 -0.8899 27 1 1.6767 1.9562 0.8900 28 1 1.5617 -1.6977 -1.3258 29 1 1.8014 -0.1296 -2.1332 30 1 3.1200 -0.8501 -1.1791 31 1 1.6711 -0.2115 2.1391 32 1 3.1300 -0.7154 1.2526 33 1 2.8736 -2.4273 -0.3610 34 1 1.9130 -3.8425 0.1147 35 1 3.7929 -2.7655 2.1569 36 1 4.5141 -3.5734 0.7386 37 1 2.9468 -4.2366 3.8018 38 1 2.2663 -5.7963 3.2898 39 1 0.6861 -4.4419 1.7583 40 1 0.3861 -4.3030 3.5087 41 1 0.0406 -3.0748 6.1356 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259867708.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 15:13:23 Heat of formation + Delta-G solvation = -60.097182 kcal Electronic energy + Delta-G solvation = -19402.939767 eV Core-core repulsion = 16703.226932 eV Total energy + Delta-G solvation = -2699.712835 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.99046 -38.72493 -36.28267 -34.70494 -32.52007 -29.82480 -28.66620 -28.00096 -27.75197 -25.68898 -25.03315 -22.70191 -20.67556 -19.56455 -18.47610 -17.43807 -17.14217 -16.88865 -16.28734 -15.83343 -15.66374 -15.06217 -14.71223 -14.37264 -14.20028 -13.46288 -13.35874 -13.32894 -12.91013 -12.81306 -12.74710 -12.71618 -12.39124 -12.32662 -12.08296 -11.99249 -11.88339 -11.50268 -11.44103 -11.24686 -11.01586 -10.96560 -10.49427 -10.21203 -8.68407 -8.07025 -6.17381 1.41147 1.42125 1.49252 2.42861 2.94918 3.19274 3.31847 4.02266 4.10505 4.17108 4.23673 4.28400 4.39136 4.43601 4.57934 4.67415 4.67660 4.81821 4.84222 4.90207 4.97558 5.02009 5.04161 5.10601 5.15905 5.22883 5.26988 5.34067 5.36950 5.41443 5.50119 5.68802 5.72728 5.79711 5.80975 6.33243 6.48531 6.67768 6.85201 7.00309 7.50470 8.96899 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.017193 B = 0.011720 C = 0.007550 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1628.134705 B = 2388.409342 C = 3707.547416 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.060 4.060 3 C -0.135 4.135 4 C -0.134 4.134 5 C 0.078 3.922 6 N -0.539 5.539 7 C 0.015 3.985 8 C 0.036 3.964 9 O -0.398 6.398 10 C 0.087 3.913 11 C -0.130 4.130 12 C 0.229 3.771 13 H -0.041 1.041 14 C -0.507 4.507 15 H 0.058 0.942 16 C 0.011 3.989 17 N -0.917 5.917 18 Si 0.950 3.050 19 H -0.274 1.274 20 H -0.287 1.287 21 H -0.275 1.275 22 H 0.029 0.971 23 H 0.058 0.942 24 H 0.047 0.953 25 H 0.059 0.941 26 H 0.069 0.931 27 H 0.042 0.958 28 H 0.056 0.944 29 H 0.063 0.937 30 H 0.058 0.942 31 H 0.042 0.958 32 H 0.027 0.973 33 H 0.110 0.890 34 H 0.066 0.934 35 H 0.030 0.970 36 H 0.119 0.881 37 H 0.011 0.989 38 H 0.091 0.909 39 H 0.044 0.956 40 H 0.071 0.929 41 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.813 3.582 -10.437 12.039 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.060 4.060 3 C -0.193 4.193 4 C -0.191 4.191 5 C -0.050 4.050 6 N -0.263 5.263 7 C -0.112 4.112 8 C -0.041 4.041 9 O -0.316 6.316 10 C 0.009 3.991 11 C -0.169 4.169 12 C 0.123 3.877 13 H -0.023 1.023 14 C -0.545 4.545 15 H 0.076 0.924 16 C -0.188 4.188 17 N -0.557 5.557 18 Si 0.776 3.224 19 H -0.199 1.199 20 H -0.212 1.212 21 H -0.201 1.201 22 H 0.048 0.952 23 H 0.077 0.923 24 H 0.067 0.933 25 H 0.078 0.922 26 H 0.088 0.912 27 H 0.061 0.939 28 H 0.075 0.925 29 H 0.082 0.918 30 H 0.077 0.923 31 H 0.060 0.940 32 H 0.045 0.955 33 H 0.128 0.872 34 H 0.085 0.915 35 H 0.049 0.951 36 H 0.137 0.863 37 H 0.029 0.971 38 H 0.109 0.891 39 H 0.062 0.938 40 H 0.090 0.910 41 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 4.428 3.339 -10.557 11.925 hybrid contribution -0.287 0.539 1.735 1.839 sum 4.141 3.878 -8.822 10.489 Atomic orbital electron populations 1.21622 0.95034 1.01338 0.99768 1.20512 0.95757 0.95029 0.94738 1.21813 1.00998 0.94739 1.01749 1.21960 1.00313 1.00527 0.96251 1.21988 0.95722 0.89448 0.97873 1.61868 1.45564 1.01549 1.17344 1.22982 0.92624 0.97939 0.97679 1.23205 0.99400 0.84503 0.96943 1.86282 1.68479 1.31115 1.45773 1.21687 0.90614 1.00360 0.86431 1.22124 0.97693 0.96792 1.00294 1.18809 0.93666 0.91940 0.83305 1.02311 1.21472 1.10707 1.25929 0.96433 0.92419 1.25607 0.99612 0.96280 0.97253 1.70054 1.40688 1.37484 1.07514 0.85739 0.80579 0.78978 0.77085 1.19921 1.21224 1.20079 0.95228 0.92322 0.93339 0.92209 0.91153 0.93877 0.92468 0.91802 0.92305 0.93951 0.95465 0.87229 0.91538 0.95137 0.86280 0.97063 0.89130 0.93772 0.91038 0.93184 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.91 8.02 71.98 0.58 -3.33 16 2 C -0.06 -1.76 0.85 -52.18 -0.04 -1.80 16 3 C -0.14 -3.33 8.47 71.98 0.61 -2.72 16 4 C -0.13 -3.26 6.83 71.98 0.49 -2.77 16 5 C 0.08 2.89 3.83 86.30 0.33 3.22 16 6 N -0.54 -22.00 3.42 -878.88 -3.01 -25.01 16 7 C 0.02 0.53 4.11 85.57 0.35 0.88 16 8 C 0.04 1.26 6.32 71.34 0.45 1.71 16 9 O -0.40 -15.70 9.95 -100.66 -1.00 -16.71 16 10 C 0.09 3.76 6.43 72.57 0.47 4.23 16 11 C -0.13 -6.31 4.81 30.52 0.15 -6.16 16 12 C 0.23 11.40 1.12 43.29 0.05 11.45 16 13 H -0.04 -2.29 6.43 -2.39 -0.02 -2.30 16 14 C -0.51 -27.56 7.65 25.60 0.20 -27.37 16 15 H 0.06 3.15 7.44 -2.91 -0.02 3.13 16 16 C 0.01 0.59 5.03 84.65 0.43 1.02 16 17 N -0.92 -52.24 11.56 21.45 0.25 -51.99 16 18 Si 0.95 44.01 29.54 68.60 2.03 46.03 16 19 H -0.27 -12.46 7.11 99.48 0.71 -11.75 16 20 H -0.29 -13.08 7.11 99.48 0.71 -12.37 16 21 H -0.28 -12.51 7.11 99.48 0.71 -11.81 16 22 H 0.03 1.05 8.06 -2.39 -0.02 1.03 16 23 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 24 H 0.05 1.80 7.62 -2.39 -0.02 1.78 16 25 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 26 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 27 H 0.04 1.14 8.14 -2.39 -0.02 1.12 16 28 H 0.06 1.54 6.46 -2.39 -0.02 1.52 16 29 H 0.06 1.31 8.13 -2.39 -0.02 1.29 16 30 H 0.06 1.29 7.20 -2.39 -0.02 1.27 16 31 H 0.04 1.86 7.02 -2.39 -0.02 1.84 16 32 H 0.03 0.94 7.52 -2.39 -0.02 0.93 16 33 H 0.11 3.06 4.28 -2.39 -0.01 3.05 16 34 H 0.07 2.42 7.24 -2.38 -0.02 2.40 16 35 H 0.03 1.19 6.47 -2.39 -0.02 1.17 16 36 H 0.12 3.17 8.14 -2.39 -0.02 3.16 16 37 H 0.01 0.53 7.72 -2.39 -0.02 0.51 16 38 H 0.09 3.58 8.14 -2.39 -0.02 3.56 16 39 H 0.04 2.09 7.24 -2.39 -0.02 2.07 16 40 H 0.07 3.89 5.86 -2.39 -0.01 3.88 16 41 H 0.26 14.21 8.31 -92.71 -0.77 13.44 16 Total: -1.00 -59.40 301.09 3.30 -56.11 By element: Atomic # 1 Polarization: 12.24 SS G_CDS: 0.98 Total: 13.22 kcal Atomic # 6 Polarization: -25.70 SS G_CDS: 4.05 Total: -21.65 kcal Atomic # 7 Polarization: -74.24 SS G_CDS: -2.76 Total: -77.00 kcal Atomic # 8 Polarization: -15.70 SS G_CDS: -1.00 Total: -16.71 kcal Atomic # 14 Polarization: 44.01 SS G_CDS: 2.03 Total: 46.03 kcal Total: -59.40 3.30 -56.11 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259867708.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.990 kcal (2) G-P(sol) polarization free energy of solvation -59.402 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.392 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.295 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.107 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.097 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds