Wall clock time and date at job start Thu Apr 9 2020 15:12:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53000 * 109.46951 * 2 1 4 4 H 1.09006 * 109.47382 * 54.32712 * 3 2 1 5 5 C 1.50697 * 109.47459 * 294.32798 * 3 2 1 6 6 H 1.08006 * 119.99709 * 273.65884 * 5 3 2 7 7 C 1.37878 * 120.00073 * 93.93350 * 5 3 2 8 8 N 1.31514 * 119.99968 * 2.05862 * 7 5 3 9 9 Si 1.86800 * 119.99972 * 182.05721 * 7 5 3 10 10 H 1.48500 * 109.46902 * 89.99629 * 9 7 5 11 11 H 1.48490 * 109.47438 * 210.00227 * 9 7 5 12 12 H 1.48504 * 109.46868 * 330.00068 * 9 7 5 13 13 N 1.46903 * 109.47192 * 174.32352 * 3 2 1 14 14 C 1.46898 * 110.99477 * 53.52355 * 13 3 2 15 15 C 1.46903 * 111.00150 * 289.57094 * 13 3 2 16 16 H 1.08997 * 110.74905 * 63.54425 * 15 13 3 17 17 C 1.55300 * 110.84595 * 300.07320 * 15 13 3 18 18 C 1.54950 * 100.93980 * 207.67531 * 17 15 13 19 19 H 1.08998 * 110.30942 * 277.52731 * 18 17 15 20 20 C 1.53001 * 110.30964 * 155.36223 * 18 17 15 21 21 O 1.43643 * 105.13681 * 36.44297 * 18 17 15 22 22 C 1.43240 * 109.97044 * 335.57339 * 21 18 17 23 23 H 1.09008 * 109.82896 * 121.22266 * 22 21 18 24 24 C 1.52999 * 109.82994 * 242.19244 * 22 21 18 25 25 H 1.09001 * 109.47081 * 183.97518 * 1 2 3 26 26 H 1.08995 * 109.47218 * 303.97804 * 1 2 3 27 27 H 1.09002 * 109.47141 * 63.97667 * 1 2 3 28 28 H 1.08991 * 109.47356 * 240.00234 * 2 1 3 29 29 H 1.08996 * 109.46827 * 120.00159 * 2 1 3 30 30 H 0.96998 * 119.99293 * 180.02562 * 8 7 5 31 31 H 1.09002 * 109.47081 * 60.00269 * 14 13 3 32 32 H 1.09005 * 109.46747 * 179.97438 * 14 13 3 33 33 H 1.08996 * 109.47466 * 299.99687 * 14 13 3 34 34 H 1.08999 * 111.13044 * 325.59389 * 17 15 13 35 35 H 1.09005 * 111.12827 * 89.71598 * 17 15 13 36 36 H 1.08999 * 109.47181 * 59.99637 * 20 18 17 37 37 H 1.08996 * 109.47403 * 180.02562 * 20 18 17 38 38 H 1.09004 * 109.46724 * 299.99942 * 20 18 17 39 39 H 1.09001 * 109.47088 * 178.13461 * 24 22 21 40 40 H 1.08996 * 109.47019 * 298.13473 * 24 22 21 41 41 H 1.09005 * 109.46828 * 58.13606 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5961 1.9849 0.8349 5 6 1.6556 2.1113 -1.2946 6 1 2.2934 2.0171 -2.1612 7 6 0.4927 2.8481 -1.3712 8 7 -0.2604 3.0009 -0.3040 9 14 -0.0130 3.6292 -2.9909 10 1 -0.8585 2.6781 -3.7564 11 1 -0.7825 4.8706 -2.7229 12 1 1.2001 3.9597 -3.7812 13 7 3.5026 1.4448 0.1370 14 6 4.1283 0.5944 -0.8844 15 6 3.9056 1.0291 1.4871 16 1 3.6023 0.0003 1.6810 17 6 3.3207 1.9891 2.5586 18 6 4.3759 1.8506 3.6849 19 1 4.1751 0.9627 4.2843 20 6 4.3768 3.0999 4.5682 21 8 5.6347 1.7193 3.0055 22 6 5.4265 1.2047 1.6850 23 1 5.8166 1.9074 0.9486 24 6 6.1287 -0.1467 1.5380 25 1 -0.3633 -1.0252 0.0712 26 1 -0.3633 0.5743 0.8521 27 1 -0.3633 0.4509 -0.9235 28 1 1.8934 -0.5137 -0.8899 29 1 1.8933 -0.5138 0.8899 30 1 -1.0786 3.5190 -0.3581 31 1 3.8695 0.9669 -1.8756 32 1 5.2110 0.6146 -0.7604 33 1 3.7687 -0.4287 -0.7754 34 1 3.2755 3.0126 2.1864 35 1 2.3400 1.6522 2.8946 36 1 3.3919 3.2282 5.0172 37 1 5.1233 2.9883 5.3546 38 1 4.6163 3.9734 3.9618 39 1 5.9391 -0.5483 0.5426 40 1 7.2015 -0.0159 1.6787 41 1 5.7454 -0.8387 2.2880 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000384835708.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 15:12:55 Heat of formation + Delta-G solvation = -51.829174 kcal Electronic energy + Delta-G solvation = -19023.475794 eV Core-core repulsion = 16324.121487 eV Total energy + Delta-G solvation = -2699.354307 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.63593 -36.82795 -33.26089 -32.34339 -31.18884 -30.09362 -28.55807 -26.52958 -24.72393 -23.59899 -22.22582 -21.09980 -20.05850 -18.61831 -16.73359 -16.36615 -15.44525 -14.64542 -14.11161 -14.08921 -13.81846 -13.45216 -13.16811 -12.86246 -12.71594 -12.43052 -12.24020 -12.00251 -11.56143 -11.47908 -11.20922 -10.95577 -10.88741 -10.79162 -10.71652 -10.42501 -10.34987 -10.27004 -10.03574 -9.78131 -9.32263 -9.14727 -8.88491 -8.42179 -7.14125 -6.02445 -4.03316 3.29729 3.37350 3.40968 4.08298 4.40848 4.81432 4.98343 5.13927 5.29541 5.42690 5.53997 5.60208 5.61763 5.71377 5.78402 5.91282 6.01853 6.07142 6.17205 6.23588 6.30289 6.32934 6.35135 6.40242 6.43224 6.51426 6.62411 6.67762 6.75676 6.93838 7.19517 7.25297 7.43039 7.51911 7.63075 7.84650 8.08064 8.34914 8.59939 9.03245 9.59119 11.05928 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.026238 B = 0.007468 C = 0.006977 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1066.888265 B = 3748.468333 C = 4011.950463 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.139 4.139 3 C 0.200 3.800 4 H 0.074 0.926 5 C -0.494 4.494 6 H 0.056 0.944 7 C 0.067 3.933 8 N -0.889 5.889 9 Si 0.890 3.110 10 H -0.282 1.282 11 H -0.287 1.287 12 H -0.275 1.275 13 N -0.520 5.520 14 C 0.026 3.974 15 C 0.055 3.945 16 H 0.045 0.955 17 C -0.137 4.137 18 C 0.075 3.925 19 H 0.061 0.939 20 C -0.147 4.147 21 O -0.381 6.381 22 C 0.082 3.918 23 H 0.087 0.913 24 C -0.163 4.163 25 H 0.011 0.989 26 H 0.052 0.948 27 H 0.063 0.937 28 H 0.041 0.959 29 H 0.018 0.982 30 H 0.260 0.740 31 H 0.071 0.929 32 H 0.047 0.953 33 H 0.016 0.984 34 H 0.091 0.909 35 H 0.077 0.923 36 H 0.067 0.933 37 H 0.055 0.945 38 H 0.063 0.937 39 H 0.068 0.932 40 H 0.056 0.944 41 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.940 -4.069 5.465 9.726 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.179 4.179 3 C 0.095 3.905 4 H 0.092 0.908 5 C -0.533 4.533 6 H 0.074 0.926 7 C -0.135 4.135 8 N -0.527 5.527 9 Si 0.718 3.282 10 H -0.209 1.209 11 H -0.213 1.213 12 H -0.199 1.199 13 N -0.244 5.244 14 C -0.122 4.122 15 C -0.055 4.055 16 H 0.063 0.937 17 C -0.175 4.175 18 C 0.018 3.982 19 H 0.079 0.921 20 C -0.205 4.205 21 O -0.300 6.300 22 C 0.024 3.976 23 H 0.105 0.895 24 C -0.220 4.220 25 H 0.030 0.970 26 H 0.071 0.929 27 H 0.082 0.918 28 H 0.060 0.940 29 H 0.037 0.963 30 H 0.070 0.930 31 H 0.090 0.910 32 H 0.065 0.935 33 H 0.035 0.965 34 H 0.109 0.891 35 H 0.096 0.904 36 H 0.086 0.914 37 H 0.075 0.925 38 H 0.082 0.918 39 H 0.086 0.914 40 H 0.075 0.925 41 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 7.142 -3.429 5.544 9.670 hybrid contribution -0.905 -0.576 -0.885 1.391 sum 6.237 -4.005 4.659 8.755 Atomic orbital electron populations 1.21410 0.95669 0.96892 1.03523 1.22218 0.97077 1.01156 0.97423 1.19674 0.80302 0.90903 0.99653 0.90764 1.20967 1.05625 1.30839 0.95856 0.92580 1.24878 0.96799 0.95635 0.96198 1.69928 1.14236 1.40825 1.27751 0.86634 0.78582 0.78811 0.84188 1.20859 1.21318 1.19949 1.62683 1.12548 1.50060 0.99076 1.22362 0.97390 0.94809 0.97652 1.23113 0.93229 0.96829 0.92312 0.93709 1.23282 0.98164 1.02002 0.94013 1.22890 0.83985 0.97474 0.93898 0.92066 1.21851 1.01795 0.97460 0.99351 1.88365 1.29201 1.85681 1.26800 1.22723 0.95247 0.94895 0.84702 0.89493 1.22231 1.00731 0.97062 1.01972 0.96954 0.92871 0.91755 0.94016 0.96319 0.93027 0.90991 0.93478 0.96527 0.89063 0.90412 0.91398 0.92549 0.91795 0.91367 0.92451 0.92800 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.61 8.74 37.16 0.32 -2.29 16 2 C -0.14 -3.06 4.52 -26.73 -0.12 -3.18 16 3 C 0.20 4.74 1.79 -68.86 -0.12 4.62 16 4 H 0.07 1.95 5.85 -51.93 -0.30 1.65 16 5 C -0.49 -12.95 7.66 -34.44 -0.26 -13.21 16 6 H 0.06 1.49 6.38 -52.48 -0.33 1.15 16 7 C 0.07 1.78 4.39 -17.82 -0.08 1.70 16 8 N -0.89 -24.19 11.64 55.43 0.65 -23.55 16 9 Si 0.89 20.90 29.54 -169.99 -5.02 15.88 16 10 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 11 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 12 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 13 N -0.52 -10.88 4.52 -225.97 -1.02 -11.90 16 14 C 0.03 0.49 8.06 60.06 0.48 0.98 16 15 C 0.05 1.00 1.91 -65.77 -0.13 0.87 16 16 H 0.05 0.83 6.47 -51.93 -0.34 0.50 16 17 C -0.14 -2.43 4.80 -24.48 -0.12 -2.54 16 18 C 0.08 1.16 4.07 -25.70 -0.10 1.05 16 19 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 20 C -0.15 -1.94 9.62 37.16 0.36 -1.59 16 21 O -0.38 -6.47 10.70 -35.23 -0.38 -6.85 16 22 C 0.08 1.37 3.09 -26.01 -0.08 1.29 16 23 H 0.09 1.53 7.74 -51.92 -0.40 1.13 16 24 C -0.16 -2.28 9.23 37.16 0.34 -1.94 16 25 H 0.01 0.23 8.14 -51.93 -0.42 -0.19 16 26 H 0.05 1.24 8.00 -51.93 -0.42 0.82 16 27 H 0.06 1.57 6.63 -51.93 -0.34 1.23 16 28 H 0.04 0.91 6.67 -51.93 -0.35 0.56 16 29 H 0.02 0.38 6.59 -51.93 -0.34 0.04 16 30 H 0.26 6.84 8.31 -40.82 -0.34 6.50 16 31 H 0.07 1.44 6.50 -51.93 -0.34 1.10 16 32 H 0.05 0.77 5.59 -51.93 -0.29 0.48 16 33 H 0.02 0.30 6.34 -51.93 -0.33 -0.03 16 34 H 0.09 1.79 8.06 -51.93 -0.42 1.37 16 35 H 0.08 1.38 7.94 -51.93 -0.41 0.97 16 36 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 37 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 39 H 0.07 0.92 6.18 -51.93 -0.32 0.60 16 40 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 41 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 LS Contribution 305.84 15.07 4.61 4.61 Total: -1.00 -26.90 305.84 -7.70 -34.60 By element: Atomic # 1 Polarization: 8.48 SS G_CDS: -7.03 Total: 1.45 kcal Atomic # 6 Polarization: -14.74 SS G_CDS: 0.49 Total: -14.24 kcal Atomic # 7 Polarization: -35.07 SS G_CDS: -0.38 Total: -35.45 kcal Atomic # 8 Polarization: -6.47 SS G_CDS: -0.38 Total: -6.85 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -5.02 Total: 15.88 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -26.90 -7.70 -34.60 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000384835708.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.230 kcal (2) G-P(sol) polarization free energy of solvation -26.901 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.131 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.698 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.599 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.829 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds