Wall clock time and date at job start Thu Apr 9 2020 15:13:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52998 * 109.47015 * 2 1 4 4 H 1.08996 * 109.47141 * 305.62815 * 3 2 1 5 5 C 1.50705 * 109.46996 * 185.62502 * 3 2 1 6 6 H 1.08001 * 119.99549 * 239.99828 * 5 3 2 7 7 C 1.37875 * 119.99862 * 60.00262 * 5 3 2 8 8 N 1.31517 * 119.99974 * 359.97438 * 7 5 3 9 9 Si 1.86802 * 119.99906 * 179.97438 * 7 5 3 10 10 H 1.48501 * 109.47113 * 359.97438 * 9 7 5 11 11 H 1.48501 * 109.46976 * 119.99830 * 9 7 5 12 12 H 1.48506 * 109.46968 * 240.00019 * 9 7 5 13 13 N 1.46906 * 109.47072 * 65.62706 * 3 2 1 14 14 C 1.46900 * 111.00005 * 204.33886 * 13 3 2 15 15 H 1.08996 * 109.47160 * 326.46767 * 14 13 3 16 16 C 1.52999 * 109.46854 * 86.46377 * 14 13 3 17 17 C 1.52995 * 109.47221 * 206.46322 * 14 13 3 18 18 H 1.09001 * 109.48066 * 54.97886 * 17 14 13 19 19 C 1.53092 * 109.47942 * 175.00165 * 17 14 13 20 20 C 1.53175 * 109.16314 * 177.58884 * 19 17 14 21 21 C 1.53175 * 109.04048 * 303.02183 * 20 19 17 22 22 C 1.53094 * 109.16242 * 56.97902 * 21 20 19 23 23 O 1.42904 * 109.48053 * 294.94584 * 17 14 13 24 24 H 1.08998 * 109.46905 * 54.33536 * 1 2 3 25 25 H 1.08998 * 109.46777 * 174.33604 * 1 2 3 26 26 H 1.09001 * 109.46802 * 294.33749 * 1 2 3 27 27 H 1.08998 * 109.47347 * 240.00186 * 2 1 3 28 28 H 1.08999 * 109.46985 * 120.00001 * 2 1 3 29 29 H 0.97001 * 119.99721 * 179.97438 * 8 7 5 30 30 H 1.00897 * 110.99605 * 328.29327 * 13 3 2 31 31 H 1.08996 * 109.47395 * 65.63692 * 16 14 13 32 32 H 1.09003 * 109.47241 * 185.64249 * 16 14 13 33 33 H 1.09010 * 109.47417 * 305.63828 * 16 14 13 34 34 H 1.08992 * 109.52448 * 297.49832 * 19 17 14 35 35 H 1.09003 * 109.52190 * 57.68635 * 19 17 14 36 36 H 1.09008 * 109.54410 * 62.88775 * 20 19 17 37 37 H 1.08999 * 109.54964 * 183.15415 * 20 19 17 38 38 H 1.09001 * 109.52547 * 176.88423 * 21 20 19 39 39 H 1.08998 * 109.52174 * 297.01253 * 21 20 19 40 40 H 1.08996 * 109.48341 * 62.37536 * 22 21 20 41 41 H 1.09003 * 109.48309 * 182.41073 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5967 1.9846 -0.8353 5 6 3.5406 1.4448 -0.1393 6 1 4.1538 1.8866 0.6322 7 6 4.1306 0.8829 -1.2516 8 7 3.3838 0.3446 -2.1908 9 14 5.9906 0.8864 -1.4246 10 1 6.5965 1.5481 -0.2413 11 1 6.4818 -0.5121 -1.5159 12 1 6.3719 1.6264 -2.6544 13 7 1.6644 2.0947 1.2616 14 6 1.5991 3.5534 1.1011 15 1 2.3510 3.8736 0.3799 16 6 0.2093 3.9494 0.5986 17 6 1.8653 4.2272 2.4486 18 1 2.8163 3.8760 2.8491 19 6 1.9209 5.7452 2.2582 20 6 2.1275 6.4156 3.6199 21 6 0.9986 5.9890 4.5633 22 6 0.9786 4.4616 4.6647 23 8 0.8144 3.9010 3.3604 24 1 -0.3633 0.5992 -0.8349 25 1 -0.3633 -1.0226 -0.1014 26 1 -0.3633 0.4235 0.9364 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 3.7988 -0.0503 -2.9736 30 1 0.7910 1.7299 1.6111 31 1 -0.5327 3.7199 1.3633 32 1 0.1913 5.0180 0.3840 33 1 -0.0211 3.3926 -0.3098 34 1 2.7498 5.9993 1.5976 35 1 0.9851 6.0919 1.8198 36 1 3.0866 6.1074 4.0363 37 1 2.1121 7.4988 3.4993 38 1 1.1679 6.4175 5.5511 39 1 0.0443 6.3415 4.1720 40 1 1.9179 4.1134 5.0943 41 1 0.1502 4.1503 5.3010 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000393966708.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 15:13:25 Heat of formation + Delta-G solvation = -69.893721 kcal Electronic energy + Delta-G solvation = -18608.042379 eV Core-core repulsion = 15907.904734 eV Total energy + Delta-G solvation = -2700.137645 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.29211 -36.52051 -33.55250 -33.38654 -31.65257 -30.06298 -28.08148 -26.02334 -24.98510 -23.58800 -22.60979 -20.53803 -19.59017 -19.39409 -16.16141 -15.96710 -15.53048 -14.87098 -14.81262 -14.40457 -14.13787 -13.77439 -13.27546 -12.81069 -12.54182 -12.46242 -12.32544 -11.94686 -11.67957 -11.47243 -11.18431 -10.97348 -10.87933 -10.81730 -10.57382 -10.52994 -10.28133 -10.04904 -9.90227 -9.59858 -9.44895 -9.06319 -8.93464 -8.30459 -7.07265 -5.92038 -3.96008 3.33249 3.41273 3.46293 4.16626 4.48164 4.85382 4.89959 4.99505 5.11362 5.36174 5.43846 5.51178 5.62000 5.68638 5.75285 5.86461 5.93703 5.96152 6.06726 6.15087 6.15589 6.20220 6.25211 6.26058 6.40777 6.48766 6.54021 6.69633 6.83943 6.94155 7.18222 7.28277 7.59158 7.66759 7.85906 7.99313 8.42583 8.48466 8.89848 9.13006 9.69063 11.13094 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.024835 B = 0.006879 C = 0.005899 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1127.171525 B = 4069.551234 C = 4745.579213 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.125 4.125 3 C 0.217 3.783 4 H 0.002 0.998 5 C -0.491 4.491 6 H 0.060 0.940 7 C 0.054 3.946 8 N -0.896 5.896 9 Si 0.892 3.108 10 H -0.274 1.274 11 H -0.285 1.285 12 H -0.287 1.287 13 N -0.679 5.679 14 C 0.101 3.899 15 H 0.091 0.909 16 C -0.175 4.175 17 C 0.104 3.896 18 H 0.062 0.938 19 C -0.153 4.153 20 C -0.121 4.121 21 C -0.155 4.155 22 C 0.061 3.939 23 O -0.371 6.371 24 H 0.041 0.959 25 H 0.035 0.965 26 H 0.036 0.964 27 H 0.098 0.902 28 H 0.040 0.960 29 H 0.258 0.742 30 H 0.323 0.677 31 H 0.058 0.942 32 H 0.047 0.953 33 H 0.051 0.949 34 H 0.072 0.928 35 H 0.070 0.930 36 H 0.061 0.939 37 H 0.061 0.939 38 H 0.065 0.935 39 H 0.067 0.933 40 H 0.046 0.954 41 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.100 9.201 9.521 14.189 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.163 4.163 3 C 0.110 3.890 4 H 0.019 0.981 5 C -0.530 4.530 6 H 0.079 0.921 7 C -0.146 4.146 8 N -0.537 5.537 9 Si 0.721 3.279 10 H -0.198 1.198 11 H -0.212 1.212 12 H -0.213 1.213 13 N -0.309 5.309 14 C -0.010 4.010 15 H 0.109 0.891 16 C -0.234 4.234 17 C 0.046 3.954 18 H 0.080 0.920 19 C -0.191 4.191 20 C -0.158 4.158 21 C -0.192 4.192 22 C -0.016 4.016 23 O -0.290 6.290 24 H 0.060 0.940 25 H 0.055 0.945 26 H 0.055 0.945 27 H 0.116 0.884 28 H 0.059 0.941 29 H 0.068 0.932 30 H 0.141 0.859 31 H 0.077 0.923 32 H 0.066 0.934 33 H 0.070 0.930 34 H 0.090 0.910 35 H 0.088 0.912 36 H 0.080 0.920 37 H 0.079 0.921 38 H 0.084 0.916 39 H 0.086 0.914 40 H 0.064 0.936 41 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -4.580 8.979 9.528 13.870 hybrid contribution 0.398 0.292 -0.604 0.780 sum -4.182 9.272 8.924 13.531 Atomic orbital electron populations 1.21876 0.99618 0.99550 0.99628 1.21748 0.91246 1.00444 1.02905 1.19181 0.95203 0.89981 0.84636 0.98053 1.21283 0.91444 1.36197 1.04029 0.92133 1.24960 0.97938 0.95765 0.95939 1.69891 1.34477 1.39704 1.09578 0.86532 0.86046 0.77584 0.77772 1.19840 1.21169 1.21306 1.60675 1.36165 1.01536 1.32538 1.21429 0.96065 0.90507 0.93045 0.89136 1.22445 0.99227 1.00589 1.01113 1.22249 0.90571 0.91889 0.90681 0.91962 1.22271 1.02752 0.96940 0.97158 1.21572 0.98480 0.99983 0.95807 1.22184 0.99642 0.97659 0.99764 1.22454 1.01225 0.91920 0.86011 1.87939 1.47077 1.73288 1.20647 0.93990 0.94544 0.94452 0.88398 0.94138 0.93225 0.85858 0.92315 0.93390 0.92959 0.90976 0.91156 0.91992 0.92055 0.91605 0.91438 0.93600 0.89659 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.99 9.64 37.16 0.36 -2.63 16 2 C -0.12 -3.00 5.37 -26.73 -0.14 -3.15 16 3 C 0.22 5.43 1.83 -68.86 -0.13 5.31 16 4 H 0.00 0.05 7.21 -51.93 -0.37 -0.32 16 5 C -0.49 -13.56 8.47 -34.44 -0.29 -13.85 16 6 H 0.06 1.71 7.81 -52.49 -0.41 1.30 16 7 C 0.05 1.50 5.29 -17.82 -0.09 1.41 16 8 N -0.90 -25.63 11.29 55.43 0.63 -25.01 16 9 Si 0.89 21.57 29.54 -169.99 -5.02 16.55 16 10 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 11 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 12 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 13 N -0.68 -14.73 6.00 -100.95 -0.61 -15.33 16 14 C 0.10 1.92 2.26 -67.72 -0.15 1.76 16 15 H 0.09 1.90 7.60 -51.93 -0.39 1.51 16 16 C -0.17 -2.99 8.67 37.16 0.32 -2.67 16 17 C 0.10 1.73 2.57 -26.69 -0.07 1.66 16 18 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 19 C -0.15 -2.09 5.22 -26.59 -0.14 -2.23 16 20 C -0.12 -1.39 6.03 -26.55 -0.16 -1.55 16 21 C -0.15 -1.68 6.14 -26.59 -0.16 -1.84 16 22 C 0.06 0.77 6.84 37.21 0.25 1.03 16 23 O -0.37 -5.99 9.37 -35.23 -0.33 -6.32 16 24 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 25 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 26 H 0.04 0.69 6.65 -51.93 -0.35 0.34 16 27 H 0.10 2.63 5.94 -51.93 -0.31 2.32 16 28 H 0.04 0.98 8.14 -51.93 -0.42 0.55 16 29 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 30 H 0.32 6.74 6.33 -39.29 -0.25 6.49 16 31 H 0.06 0.98 7.37 -51.93 -0.38 0.60 16 32 H 0.05 0.73 6.80 -51.93 -0.35 0.37 16 33 H 0.05 0.96 7.48 -51.92 -0.39 0.57 16 34 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 35 H 0.07 0.95 6.59 -51.93 -0.34 0.61 16 36 H 0.06 0.71 8.14 -51.92 -0.42 0.28 16 37 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 38 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 39 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 40 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 41 H 0.09 0.94 8.14 -51.93 -0.42 0.51 16 LS Contribution 313.48 15.07 4.72 4.72 Total: -1.00 -28.34 313.48 -8.34 -36.68 By element: Atomic # 1 Polarization: 12.79 SS G_CDS: -7.33 Total: 5.46 kcal Atomic # 6 Polarization: -16.35 SS G_CDS: -0.40 Total: -16.75 kcal Atomic # 7 Polarization: -40.36 SS G_CDS: 0.02 Total: -40.34 kcal Atomic # 8 Polarization: -5.99 SS G_CDS: -0.33 Total: -6.32 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.55 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -28.34 -8.34 -36.68 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000393966708.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.209 kcal (2) G-P(sol) polarization free energy of solvation -28.341 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.550 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.343 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.685 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.894 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds