Wall clock time and date at job start Thu Apr 9 2020 15:12:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08999 * 110.33258 * 2 1 4 4 O 1.44688 * 110.44730 * 237.72217 * 2 1 3 5 5 C 1.44428 * 105.13885 * 200.62940 * 4 2 1 6 6 C 1.54483 * 104.89902 * 40.49479 * 5 4 2 7 7 H 1.09001 * 110.51072 * 217.32149 * 6 5 4 8 8 N 1.46893 * 110.50908 * 94.75059 * 6 5 4 9 9 C 1.46902 * 111.00212 * 86.45322 * 8 6 5 10 10 C 1.53004 * 109.47334 * 179.97438 * 9 8 6 11 11 C 1.53000 * 109.47016 * 179.97438 * 10 9 8 12 12 C 1.53004 * 109.47016 * 180.02562 * 11 10 9 13 13 C 1.50699 * 109.47182 * 180.02562 * 12 11 10 14 14 H 1.08005 * 119.99962 * 0.02562 * 13 12 11 15 15 C 1.37874 * 119.99957 * 179.97438 * 13 12 11 16 16 N 1.31513 * 120.00368 * 0.02562 * 15 13 12 17 17 Si 1.86808 * 119.99963 * 180.02562 * 15 13 12 18 18 H 1.48504 * 109.46737 * 0.02562 * 17 15 13 19 19 H 1.48499 * 109.46873 * 119.99905 * 17 15 13 20 20 H 1.48497 * 109.47247 * 240.00487 * 17 15 13 21 21 C 1.54477 * 110.37090 * 122.25386 * 2 1 3 22 22 H 1.09000 * 110.62726 * 261.62101 * 21 2 1 23 23 C 1.52997 * 110.51450 * 24.27278 * 21 2 1 24 24 H 1.08996 * 109.47277 * 297.74420 * 1 2 3 25 25 H 1.09001 * 109.47438 * 57.75018 * 1 2 3 26 26 H 1.09003 * 109.47473 * 177.75036 * 1 2 3 27 27 H 1.09002 * 110.37130 * 281.60836 * 5 4 2 28 28 H 1.08999 * 110.37385 * 159.38239 * 5 4 2 29 29 H 1.00900 * 111.00022 * 210.40194 * 8 6 5 30 30 H 1.09007 * 109.47098 * 299.99779 * 9 8 6 31 31 H 1.09003 * 109.47018 * 59.99784 * 9 8 6 32 32 H 1.08994 * 109.47007 * 299.99693 * 10 9 8 33 33 H 1.09003 * 109.47041 * 60.00048 * 10 9 8 34 34 H 1.09000 * 109.47158 * 300.00291 * 11 10 9 35 35 H 1.09003 * 109.46995 * 60.00242 * 11 10 9 36 36 H 1.09001 * 109.46664 * 300.00049 * 12 11 10 37 37 H 1.09003 * 109.47041 * 60.00270 * 12 11 10 38 38 H 0.96989 * 120.00174 * 179.97438 * 16 15 13 39 39 H 1.08997 * 109.47465 * 174.63801 * 23 21 2 40 40 H 1.09001 * 109.47233 * 294.64800 * 23 21 2 41 41 H 1.09006 * 109.46895 * 54.64209 * 23 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9087 1.0221 0.0000 4 8 2.0354 -0.7240 -1.1462 5 6 3.3897 -1.0846 -0.7973 6 6 3.3193 -1.5028 0.6881 7 1 4.2114 -1.1729 1.2205 8 7 3.1599 -2.9583 0.8061 9 6 4.4642 -3.6340 0.7869 10 6 4.2577 -5.1449 0.9121 11 6 5.6161 -5.8486 0.8915 12 6 5.4096 -7.3595 1.0161 13 6 6.7476 -8.0527 0.9964 14 1 7.6546 -7.4735 0.9046 15 6 6.8139 -9.4262 1.0966 16 7 5.7096 -10.1315 1.2089 17 14 8.4725 -10.2854 1.0729 18 1 9.5519 -9.2742 0.9395 19 1 8.6565 -11.0412 2.3379 20 1 8.5277 -11.2235 -0.0769 21 6 2.0677 -0.7728 1.2247 22 1 2.3407 -0.0838 2.0240 23 6 1.0297 -1.7819 1.7199 24 1 -0.3633 0.4784 0.9095 25 1 -0.3634 0.5484 -0.8691 26 1 -0.3634 -1.0269 -0.0403 27 1 4.0537 -0.2288 -0.9196 28 1 3.7303 -1.9188 -1.4107 29 1 2.6403 -3.1990 1.6368 30 1 4.9741 -3.4131 -0.1509 31 1 5.0692 -3.2799 1.6216 32 1 3.7481 -5.3654 1.8500 33 1 3.6526 -5.4993 0.0777 34 1 6.1254 -5.6280 -0.0466 35 1 6.2216 -5.4942 1.7257 36 1 4.9001 -7.5804 1.9541 37 1 4.8043 -7.7136 0.1816 38 1 5.7563 -11.0977 1.2790 39 1 1.4602 -2.3823 2.5214 40 1 0.1552 -1.2496 2.0941 41 1 0.7343 -2.4328 0.8970 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000405787607.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 15:12:05 Heat of formation + Delta-G solvation = -66.537807 kcal Electronic energy + Delta-G solvation = -17401.430527 eV Core-core repulsion = 14701.438405 eV Total energy + Delta-G solvation = -2699.992122 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.16467 -36.39287 -34.36956 -33.45627 -32.18376 -30.13527 -28.03318 -27.34928 -25.14979 -24.30714 -21.66502 -21.01134 -20.08981 -19.58750 -17.12441 -16.45061 -16.05118 -15.46457 -15.12062 -14.98408 -14.41813 -13.98937 -13.77106 -13.03166 -12.92709 -12.66324 -12.46813 -12.25806 -11.97995 -11.67508 -11.53910 -11.40020 -11.02724 -11.00773 -10.94412 -10.82402 -10.54414 -10.44353 -10.39468 -9.82108 -9.61533 -9.24009 -8.97474 -8.37122 -8.31235 -5.96403 -3.98570 3.32725 3.39947 3.44237 3.75320 4.10154 4.26166 4.48965 4.53078 4.72491 4.94096 5.11895 5.18063 5.23451 5.34110 5.37664 5.38854 5.39482 5.45996 5.54602 5.65119 5.71232 5.80112 5.87874 5.92464 5.94706 6.14417 6.16443 6.26539 6.52770 6.71881 6.84374 6.98364 7.08017 7.25146 7.40902 7.72995 7.88777 8.04884 8.47699 9.09216 9.65294 11.15008 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.058406 B = 0.003343 C = 0.003272 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 479.286607 B = 8372.706107 C = 8554.317515 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.075 3.925 3 H 0.064 0.936 4 O -0.364 6.364 5 C 0.056 3.944 6 C 0.055 3.945 7 H 0.055 0.945 8 N -0.680 5.680 9 C 0.056 3.944 10 C -0.115 4.115 11 C -0.109 4.109 12 C 0.021 3.979 13 C -0.519 4.519 14 H 0.054 0.946 15 C 0.055 3.945 16 N -0.896 5.896 17 Si 0.891 3.109 18 H -0.273 1.273 19 H -0.284 1.284 20 H -0.284 1.284 21 C -0.124 4.124 22 H 0.080 0.920 23 C -0.143 4.143 24 H 0.067 0.933 25 H 0.058 0.942 26 H 0.071 0.929 27 H 0.055 0.945 28 H 0.099 0.901 29 H 0.345 0.655 30 H 0.068 0.932 31 H 0.026 0.974 32 H 0.053 0.947 33 H 0.066 0.934 34 H 0.047 0.953 35 H 0.044 0.956 36 H 0.014 0.986 37 H 0.016 0.984 38 H 0.259 0.741 39 H 0.055 0.945 40 H 0.058 0.942 41 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.759 21.336 0.388 23.067 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.017 3.983 3 H 0.082 0.918 4 O -0.283 6.283 5 C -0.022 4.022 6 C -0.056 4.056 7 H 0.073 0.927 8 N -0.316 5.316 9 C -0.072 4.072 10 C -0.153 4.153 11 C -0.147 4.147 12 C -0.016 4.016 13 C -0.558 4.558 14 H 0.073 0.927 15 C -0.146 4.146 16 N -0.536 5.536 17 Si 0.719 3.281 18 H -0.198 1.198 19 H -0.211 1.211 20 H -0.210 1.210 21 C -0.143 4.143 22 H 0.099 0.901 23 C -0.200 4.200 24 H 0.086 0.914 25 H 0.078 0.922 26 H 0.090 0.910 27 H 0.074 0.926 28 H 0.117 0.883 29 H 0.168 0.832 30 H 0.087 0.913 31 H 0.044 0.956 32 H 0.072 0.928 33 H 0.084 0.916 34 H 0.066 0.934 35 H 0.063 0.937 36 H 0.032 0.968 37 H 0.034 0.966 38 H 0.069 0.931 39 H 0.074 0.926 40 H 0.077 0.923 41 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -9.052 21.014 -0.453 22.885 hybrid contribution 1.488 -0.308 1.119 1.887 sum -7.564 20.706 0.666 22.054 Atomic orbital electron populations 1.21869 0.93345 1.03389 1.01880 1.22977 0.95412 0.94736 0.85130 0.91827 1.89212 1.27193 1.74420 1.37505 1.23449 0.84279 0.99347 0.95113 1.22900 0.96691 0.89431 0.96561 0.92705 1.60732 1.19276 1.05247 1.46297 1.22155 0.89314 0.95488 1.00263 1.21628 0.99624 0.92227 1.01811 1.21590 0.94114 0.98902 1.00080 1.19098 0.96857 0.88595 0.97096 1.21329 0.93065 0.91687 1.49685 0.92738 1.25038 0.96374 0.97714 0.95448 1.69975 1.26709 1.06185 1.50681 0.86558 0.84397 0.79620 0.77557 1.19776 1.21056 1.21008 1.22680 0.95658 0.97845 0.98087 0.90123 1.21797 0.97866 0.98823 1.01563 0.91393 0.92244 0.91014 0.92638 0.88329 0.83236 0.91344 0.95609 0.92821 0.91572 0.93435 0.93729 0.96756 0.96572 0.93106 0.92629 0.92293 0.90471 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.20 8.42 37.16 0.31 -0.89 16 2 C 0.08 0.72 3.83 -25.96 -0.10 0.62 16 3 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 4 O -0.36 -4.61 11.37 -35.23 -0.40 -5.01 16 5 C 0.06 0.63 7.27 37.94 0.28 0.91 16 6 C 0.05 0.59 3.41 -66.15 -0.23 0.37 16 7 H 0.06 0.57 7.88 -51.93 -0.41 0.16 16 8 N -0.68 -8.60 5.65 -105.07 -0.59 -9.19 16 9 C 0.06 0.80 5.50 -3.82 -0.02 0.78 16 10 C -0.11 -1.99 5.47 -26.73 -0.15 -2.13 16 11 C -0.11 -2.27 5.15 -26.73 -0.14 -2.41 16 12 C 0.02 0.55 4.97 -27.88 -0.14 0.41 16 13 C -0.52 -15.06 9.11 -34.44 -0.31 -15.38 16 14 H 0.05 1.54 7.74 -52.48 -0.41 1.13 16 15 C 0.05 1.61 5.46 -17.82 -0.10 1.52 16 16 N -0.90 -27.46 13.29 55.43 0.74 -26.73 16 17 Si 0.89 21.98 29.54 -169.99 -5.02 16.96 16 18 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 19 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 20 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 21 C -0.12 -1.12 3.63 -89.06 -0.32 -1.45 16 22 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 23 C -0.14 -1.26 6.65 37.16 0.25 -1.02 16 24 H 0.07 0.43 7.78 -51.93 -0.40 0.02 16 25 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 26 H 0.07 0.64 6.58 -51.93 -0.34 0.30 16 27 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 28 H 0.10 1.22 7.71 -51.93 -0.40 0.82 16 29 H 0.35 4.11 5.78 -39.29 -0.23 3.88 16 30 H 0.07 0.97 7.81 -51.93 -0.41 0.57 16 31 H 0.03 0.36 8.08 -51.93 -0.42 -0.06 16 32 H 0.05 0.92 8.14 -51.93 -0.42 0.49 16 33 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 34 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 35 H 0.04 0.91 8.14 -51.93 -0.42 0.49 16 36 H 0.01 0.40 8.14 -51.93 -0.42 -0.03 16 37 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 38 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 39 H 0.05 0.48 6.70 -51.93 -0.35 0.13 16 40 H 0.06 0.43 7.05 -51.93 -0.37 0.06 16 41 H 0.08 0.82 7.17 -51.93 -0.37 0.45 16 LS Contribution 320.05 15.07 4.82 4.82 Total: -1.00 -31.11 320.05 -8.59 -39.69 By element: Atomic # 1 Polarization: 5.59 SS G_CDS: -7.46 Total: -1.87 kcal Atomic # 6 Polarization: -18.01 SS G_CDS: -0.67 Total: -18.68 kcal Atomic # 7 Polarization: -36.06 SS G_CDS: 0.14 Total: -35.92 kcal Atomic # 8 Polarization: -4.61 SS G_CDS: -0.40 Total: -5.01 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.02 Total: 16.96 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -31.11 -8.59 -39.69 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000405787607.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.843 kcal (2) G-P(sol) polarization free energy of solvation -31.109 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.952 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.585 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.695 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.538 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds