Wall clock time and date at job start Thu Apr 9 2020 15:12:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46898 * 111.00188 * 2 1 4 4 H 1.09002 * 109.47032 * 324.99703 * 3 2 1 5 5 C 1.53005 * 109.47342 * 84.99554 * 3 2 1 6 6 C 1.52997 * 109.47452 * 180.02562 * 5 3 2 7 7 C 1.53002 * 109.46817 * 300.00239 * 6 5 3 8 8 C 1.53000 * 109.47233 * 60.00194 * 7 6 5 9 9 C 1.52997 * 109.47060 * 299.99657 * 8 7 6 10 10 H 1.09002 * 109.47153 * 300.00319 * 9 8 7 11 11 O 1.42895 * 109.47503 * 180.02562 * 9 8 7 12 12 C 1.42902 * 114.00204 * 89.99725 * 11 9 8 13 13 C 1.53001 * 109.46788 * 180.02562 * 12 11 9 14 14 C 1.53005 * 109.46671 * 180.02562 * 13 12 11 15 15 C 1.50702 * 109.46823 * 180.02562 * 14 13 12 16 16 H 1.07994 * 120.00156 * 0.02562 * 15 14 13 17 17 C 1.37882 * 119.99677 * 179.97438 * 15 14 13 18 18 N 1.31522 * 120.00012 * 0.02562 * 17 15 14 19 19 Si 1.86798 * 119.99962 * 179.97438 * 17 15 14 20 20 H 1.48502 * 109.46757 * 90.00219 * 19 17 15 21 21 H 1.48500 * 109.47523 * 210.00308 * 19 17 15 22 22 H 1.48499 * 109.47078 * 330.00393 * 19 17 15 23 23 H 1.08997 * 109.47146 * 300.00477 * 1 2 3 24 24 H 1.09006 * 109.46899 * 60.00327 * 1 2 3 25 25 H 1.09002 * 109.47154 * 180.02562 * 1 2 3 26 26 H 1.00905 * 110.99629 * 123.94962 * 2 1 3 27 27 H 1.09002 * 109.46935 * 60.00090 * 5 3 2 28 28 H 1.09001 * 109.46812 * 300.00432 * 5 3 2 29 29 H 1.08993 * 109.47194 * 179.97438 * 6 5 3 30 30 H 1.09002 * 109.46695 * 59.99734 * 6 5 3 31 31 H 1.08992 * 109.47063 * 299.99823 * 7 6 5 32 32 H 1.09004 * 109.46733 * 179.97438 * 7 6 5 33 33 H 1.09002 * 109.47398 * 59.99826 * 8 7 6 34 34 H 1.09001 * 109.47194 * 180.02562 * 8 7 6 35 35 H 1.08996 * 109.47054 * 300.00226 * 12 11 9 36 36 H 1.08997 * 109.46428 * 60.00355 * 12 11 9 37 37 H 1.08996 * 109.47390 * 299.99877 * 13 12 11 38 38 H 1.08997 * 109.47462 * 60.00846 * 13 12 11 39 39 H 1.08996 * 109.46984 * 299.99968 * 14 13 12 40 40 H 1.08993 * 109.47089 * 60.00085 * 14 13 12 41 41 H 0.96993 * 119.99494 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 1 1.3398 2.0123 -0.5895 5 6 2.0608 1.8927 1.4370 6 6 2.6086 3.3212 1.4370 7 6 4.0118 3.3293 0.8272 8 6 3.9464 2.8082 -0.6098 9 6 3.3987 1.3796 -0.6098 10 1 4.0547 0.7390 -0.0204 11 8 3.3382 0.8926 -1.9518 12 6 4.5278 0.2289 -2.3836 13 6 4.3509 -0.2472 -3.8268 14 6 5.6245 -0.9583 -4.2888 15 6 5.4505 -1.4268 -5.7106 16 1 4.5245 -1.2360 -6.2325 17 6 6.4741 -2.0980 -6.3453 18 7 7.6020 -2.3299 -5.7098 19 14 6.2583 -2.6794 -8.1074 20 1 6.7120 -1.6153 -9.0387 21 1 7.0658 -3.9062 -8.3264 22 1 4.8255 -2.9786 -8.3579 23 1 -0.3633 0.5139 0.8899 24 1 -0.3633 0.5138 -0.8901 25 1 -0.3633 -1.0277 0.0005 26 1 1.8306 -0.5261 0.7815 27 1 2.7165 1.2518 2.0265 28 1 1.0611 1.8872 1.8713 29 1 2.6547 3.6927 2.4606 30 1 1.9525 3.9618 0.8475 31 1 4.6677 2.6888 1.4165 32 1 4.4018 4.3472 0.8268 33 1 3.2904 3.4488 -1.1992 34 1 4.9462 2.8135 -1.0441 35 1 5.3691 0.9198 -2.3298 36 1 4.7199 -0.6285 -1.7386 37 1 3.5095 -0.9380 -3.8810 38 1 4.1591 0.6105 -4.4715 39 1 6.4661 -0.2679 -4.2346 40 1 5.8159 -1.8160 -3.6441 41 1 8.3218 -2.8024 -6.1563 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000166670310.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 15:12:32 Heat of formation + Delta-G solvation = -79.873298 kcal Electronic energy + Delta-G solvation = -17669.076151 eV Core-core repulsion = 14968.505759 eV Total energy + Delta-G solvation = -2700.570392 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.47024 -36.64183 -34.90547 -33.71064 -31.50730 -30.00631 -29.08807 -26.41823 -24.79546 -23.10083 -22.10127 -21.72198 -20.36308 -19.79995 -16.69094 -16.28809 -15.53871 -15.41048 -14.94118 -14.78018 -14.38744 -13.88481 -13.69392 -13.40142 -13.19825 -12.71889 -12.67074 -12.12554 -11.86860 -11.80546 -11.58848 -11.29724 -11.10870 -10.93599 -10.85562 -10.68641 -10.53659 -10.38344 -10.10529 -9.69592 -9.34768 -9.02605 -8.91920 -8.34788 -8.29134 -5.94733 -3.96329 3.36703 3.42323 3.46851 3.99526 4.08672 4.51706 4.58821 4.74880 4.86532 5.00512 5.12597 5.25201 5.25782 5.34049 5.36308 5.41218 5.43194 5.56436 5.70626 5.81372 5.84935 5.87380 5.90246 5.91733 5.95251 6.03062 6.21452 6.26652 6.38163 6.83359 6.87813 6.97917 7.21811 7.33774 7.73005 7.85376 7.88526 8.05967 8.49781 9.10576 9.67269 11.16944 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.036208 B = 0.004127 C = 0.003841 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 773.118853 B = 6783.503975 C = 7287.768490 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 N -0.679 5.679 3 C 0.092 3.908 4 H 0.083 0.917 5 C -0.146 4.146 6 C -0.116 4.116 7 C -0.118 4.118 8 C -0.144 4.144 9 C 0.103 3.897 10 H 0.054 0.946 11 O -0.369 6.369 12 C 0.066 3.934 13 C -0.106 4.106 14 C 0.023 3.977 15 C -0.517 4.517 16 H 0.056 0.944 17 C 0.055 3.945 18 N -0.897 5.897 19 Si 0.893 3.107 20 H -0.281 1.281 21 H -0.287 1.287 22 H -0.273 1.273 23 H 0.016 0.984 24 H 0.065 0.935 25 H 0.066 0.934 26 H 0.337 0.663 27 H 0.065 0.935 28 H 0.063 0.937 29 H 0.061 0.939 30 H 0.063 0.937 31 H 0.062 0.938 32 H 0.064 0.936 33 H 0.069 0.931 34 H 0.068 0.932 35 H 0.037 0.963 36 H 0.041 0.959 37 H 0.056 0.944 38 H 0.052 0.948 39 H 0.015 0.985 40 H 0.016 0.984 41 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.775 9.880 16.463 22.017 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 N -0.307 5.307 3 C -0.019 4.019 4 H 0.101 0.899 5 C -0.186 4.186 6 C -0.154 4.154 7 C -0.155 4.155 8 C -0.182 4.182 9 C 0.044 3.956 10 H 0.072 0.928 11 O -0.288 6.288 12 C -0.010 4.010 13 C -0.143 4.143 14 C -0.014 4.014 15 C -0.555 4.555 16 H 0.074 0.926 17 C -0.145 4.145 18 N -0.537 5.537 19 Si 0.721 3.279 20 H -0.207 1.207 21 H -0.213 1.213 22 H -0.198 1.198 23 H 0.034 0.966 24 H 0.084 0.916 25 H 0.084 0.916 26 H 0.155 0.845 27 H 0.083 0.917 28 H 0.081 0.919 29 H 0.080 0.920 30 H 0.082 0.918 31 H 0.081 0.919 32 H 0.083 0.917 33 H 0.088 0.912 34 H 0.087 0.913 35 H 0.055 0.945 36 H 0.059 0.941 37 H 0.074 0.926 38 H 0.071 0.929 39 H 0.034 0.966 40 H 0.035 0.965 41 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -10.736 9.718 15.618 21.298 hybrid contribution 0.085 -0.113 0.156 0.210 sum -10.651 9.606 15.774 21.320 Atomic orbital electron populations 1.22191 0.87928 1.01726 0.99989 1.60345 1.07474 1.13313 1.49589 1.21690 0.96286 0.89684 0.94217 0.89911 1.22259 1.01144 0.97526 0.97644 1.21492 0.96903 0.96304 1.00735 1.21511 0.96769 1.01201 0.96043 1.22082 1.02119 0.97325 0.96686 1.21886 0.95125 0.93330 0.85236 0.92776 1.87955 1.38362 1.75257 1.27253 1.22733 0.86082 0.94529 0.97651 1.21610 1.01326 0.99904 0.91490 1.19046 0.91195 0.95112 0.96023 1.21248 1.00294 1.35843 0.98136 0.92555 1.25027 0.95286 0.96129 0.98086 1.69973 1.04763 1.41948 1.37028 0.86578 0.78140 0.78178 0.85024 1.20692 1.21260 1.19820 0.96570 0.91631 0.91562 0.84511 0.91658 0.91862 0.92007 0.91805 0.91942 0.91717 0.91207 0.91309 0.94496 0.94073 0.92567 0.92884 0.96633 0.96525 0.93065 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.32 10.50 60.07 0.63 0.95 16 2 N -0.68 -8.23 6.47 -114.00 -0.74 -8.97 16 3 C 0.09 1.07 2.16 -67.71 -0.15 0.92 16 4 H 0.08 1.04 7.80 -51.93 -0.40 0.63 16 5 C -0.15 -1.30 5.17 -26.73 -0.14 -1.44 16 6 C -0.12 -0.96 5.92 -26.73 -0.16 -1.12 16 7 C -0.12 -1.09 5.92 -26.73 -0.16 -1.25 16 8 C -0.14 -1.72 5.54 -26.73 -0.15 -1.87 16 9 C 0.10 1.42 2.26 -26.73 -0.06 1.36 16 10 H 0.05 0.75 7.79 -51.93 -0.40 0.34 16 11 O -0.37 -6.63 9.85 -35.23 -0.35 -6.98 16 12 C 0.07 1.28 5.75 37.16 0.21 1.49 16 13 C -0.11 -2.40 5.52 -26.73 -0.15 -2.54 16 14 C 0.02 0.63 4.97 -27.88 -0.14 0.49 16 15 C -0.52 -15.20 9.11 -34.44 -0.31 -15.51 16 16 H 0.06 1.62 7.74 -52.49 -0.41 1.21 16 17 C 0.06 1.63 5.46 -17.81 -0.10 1.54 16 18 N -0.90 -27.55 13.29 55.43 0.74 -26.82 16 19 Si 0.89 22.18 29.54 -169.99 -5.02 17.16 16 20 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 21 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 22 H -0.27 -6.66 7.11 56.52 0.40 -6.26 16 23 H 0.02 0.14 7.44 -51.93 -0.39 -0.25 16 24 H 0.06 0.71 8.06 -51.93 -0.42 0.29 16 25 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 26 H 0.34 3.58 8.56 -39.29 -0.34 3.25 16 27 H 0.06 0.56 8.13 -51.93 -0.42 0.14 16 28 H 0.06 0.52 7.45 -51.93 -0.39 0.13 16 29 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 34 H 0.07 0.87 7.87 -51.93 -0.41 0.47 16 35 H 0.04 0.69 7.87 -51.93 -0.41 0.28 16 36 H 0.04 0.78 8.08 -51.93 -0.42 0.37 16 37 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 38 H 0.05 1.20 8.14 -51.93 -0.42 0.78 16 39 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 40 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 41 H 0.26 7.49 8.31 -40.82 -0.34 7.16 16 LS Contribution 325.26 15.07 4.90 4.90 Total: -1.00 -31.40 325.26 -8.90 -40.29 By element: Atomic # 1 Polarization: 5.15 SS G_CDS: -7.76 Total: -2.61 kcal Atomic # 6 Polarization: -16.32 SS G_CDS: -0.66 Total: -16.98 kcal Atomic # 7 Polarization: -35.78 SS G_CDS: 0.00 Total: -35.79 kcal Atomic # 8 Polarization: -6.63 SS G_CDS: -0.35 Total: -6.98 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -5.02 Total: 17.16 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -31.40 -8.90 -40.29 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000166670310.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.581 kcal (2) G-P(sol) polarization free energy of solvation -31.397 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.978 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.895 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.293 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.873 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds