Wall clock time and date at job start Thu Apr 9 2020 15:13:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42904 * 114.00095 * 2 1 4 4 H 1.08998 * 109.46993 * 26.89659 * 3 2 1 5 5 C 1.53000 * 109.47113 * 266.89669 * 3 2 1 6 6 N 1.46901 * 109.47098 * 174.67611 * 5 3 2 7 7 C 1.46900 * 111.00063 * 288.66813 * 6 5 3 8 8 C 1.46907 * 110.99787 * 164.71074 * 6 5 3 9 9 C 1.50700 * 109.47044 * 190.00040 * 8 6 5 10 10 H 1.07997 * 119.99623 * 0.02562 * 9 8 6 11 11 C 1.37876 * 120.00023 * 180.02562 * 9 8 6 12 12 N 1.31511 * 119.99692 * 359.97438 * 11 9 8 13 13 Si 1.86799 * 119.99894 * 180.02562 * 11 9 8 14 14 H 1.48493 * 109.47074 * 59.99847 * 13 11 9 15 15 H 1.48498 * 109.46718 * 179.97438 * 13 11 9 16 16 H 1.48496 * 109.46920 * 299.99455 * 13 11 9 17 17 C 1.52998 * 109.47254 * 146.89817 * 3 2 1 18 18 C 1.54261 * 110.03388 * 57.90630 * 17 3 2 19 19 C 1.54963 * 104.15948 * 217.13676 * 18 17 3 20 20 C 1.54893 * 102.77921 * 37.89211 * 19 18 17 21 21 C 1.53875 * 110.03081 * 300.68898 * 17 3 2 22 22 H 1.09006 * 109.47212 * 304.86089 * 1 2 3 23 23 H 1.08994 * 109.47506 * 64.86191 * 1 2 3 24 24 H 1.09005 * 109.46847 * 184.86680 * 1 2 3 25 25 H 1.09007 * 109.46816 * 294.67894 * 5 3 2 26 26 H 1.09000 * 109.47528 * 54.67527 * 5 3 2 27 27 H 1.08995 * 109.46986 * 65.02618 * 7 6 5 28 28 H 1.09001 * 109.46875 * 185.02824 * 7 6 5 29 29 H 1.08997 * 109.46871 * 305.02336 * 7 6 5 30 30 H 1.08997 * 109.47338 * 310.00652 * 8 6 5 31 31 H 1.09002 * 109.46567 * 70.00462 * 8 6 5 32 32 H 0.97002 * 120.00117 * 180.02562 * 12 11 9 33 33 H 1.09001 * 110.01663 * 179.30536 * 17 3 2 34 34 H 1.09003 * 110.48636 * 335.78200 * 18 17 3 35 35 H 1.08996 * 110.48898 * 98.43132 * 18 17 3 36 36 H 1.09003 * 110.72555 * 279.57491 * 19 18 17 37 37 H 1.09008 * 110.92126 * 156.29439 * 19 18 17 38 38 H 1.09003 * 110.48495 * 203.40369 * 20 19 18 39 39 H 1.08996 * 110.60249 * 80.81417 * 20 19 18 40 40 H 1.09002 * 110.03689 * 238.57341 * 21 17 3 41 41 H 1.09005 * 110.03244 * 359.95588 * 21 17 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3207 2.0102 0.4649 5 6 2.2890 1.7396 -1.4404 6 7 2.7671 3.1286 -1.4493 7 6 1.6798 4.0618 -1.1253 8 6 3.3827 3.4652 -2.7400 9 6 4.0751 4.7994 -2.6336 10 1 4.0597 5.3428 -1.7004 11 6 4.7281 5.3264 -3.7276 12 7 4.7471 4.6644 -4.8638 13 14 5.5870 6.9800 -3.5955 14 1 6.6387 6.9093 -2.5496 15 1 6.2091 7.3202 -4.9003 16 1 4.5963 8.0246 -3.2316 17 6 3.3215 1.2799 0.7878 18 6 4.2882 0.2477 0.1715 19 6 5.0057 -0.3771 1.3947 20 6 3.8737 -0.4641 2.4484 21 6 3.0583 0.8280 2.2349 22 1 -0.3634 0.5874 0.8433 23 1 -0.3634 0.4365 -0.9303 24 1 -0.3633 -1.0240 0.0872 25 1 3.0496 1.0907 -1.8747 26 1 1.3723 1.6671 -2.0257 27 1 1.3483 3.8918 -0.1010 28 1 2.0382 5.0862 -1.2260 29 1 0.8462 3.8996 -1.8086 30 1 4.1101 2.6985 -3.0066 31 1 2.6109 3.5165 -3.5081 32 1 5.2068 5.0350 -5.6334 33 1 3.7790 2.2693 0.7830 34 1 3.7339 -0.5147 -0.3758 35 1 5.0072 0.7412 -0.4823 36 1 5.8091 0.2717 1.7436 37 1 5.3885 -1.3696 1.1563 38 1 4.2908 -0.4901 3.4551 39 1 3.2516 -1.3414 2.2714 40 1 3.3888 1.5976 2.9325 41 1 1.9962 0.6276 2.3762 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595347708.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 15:13:22 Heat of formation + Delta-G solvation = -61.019695 kcal Electronic energy + Delta-G solvation = -18436.177813 eV Core-core repulsion = 15736.424975 eV Total energy + Delta-G solvation = -2699.752838 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.20596 -36.55559 -36.10504 -32.60514 -30.59499 -28.45551 -27.42739 -26.66661 -26.37471 -24.43839 -21.89770 -20.60885 -20.10071 -18.92883 -16.44121 -16.31187 -15.76270 -15.27784 -14.80810 -14.61784 -14.03635 -13.91217 -13.61760 -13.07363 -12.98368 -12.62914 -12.20943 -11.93360 -11.47323 -11.36873 -11.00907 -10.88813 -10.87436 -10.71009 -10.66604 -10.62155 -10.49170 -10.30778 -10.11971 -9.98678 -9.80379 -9.45976 -9.00761 -8.42809 -7.23450 -6.01668 -4.03118 3.33859 3.37997 3.40763 3.95413 4.44127 4.84668 4.92403 5.04286 5.18533 5.30178 5.33926 5.42043 5.48169 5.56369 5.66836 5.71416 5.76783 5.93436 5.97304 6.04010 6.07837 6.11372 6.15972 6.19449 6.28436 6.35180 6.41758 6.50707 6.57738 6.68564 6.73269 6.89098 7.29320 7.35347 7.47841 7.80593 8.09739 8.20067 8.55374 9.04206 9.60897 11.09228 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.027130 B = 0.005982 C = 0.005421 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1031.833621 B = 4679.861210 C = 5163.760749 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.382 6.382 3 C 0.101 3.899 4 H 0.056 0.944 5 C 0.036 3.964 6 N -0.533 5.533 7 C 0.034 3.966 8 C 0.194 3.806 9 C -0.507 4.507 10 H 0.063 0.937 11 C 0.055 3.945 12 N -0.899 5.899 13 Si 0.898 3.102 14 H -0.276 1.276 15 H -0.288 1.288 16 H -0.278 1.278 17 C -0.078 4.078 18 C -0.113 4.113 19 C -0.124 4.124 20 C -0.118 4.118 21 C -0.116 4.116 22 H 0.036 0.964 23 H 0.037 0.963 24 H 0.079 0.921 25 H 0.076 0.924 26 H 0.020 0.980 27 H 0.043 0.957 28 H 0.077 0.923 29 H 0.008 0.992 30 H 0.030 0.970 31 H -0.011 1.011 32 H 0.262 0.738 33 H 0.098 0.902 34 H 0.069 0.931 35 H 0.067 0.933 36 H 0.062 0.938 37 H 0.058 0.942 38 H 0.054 0.946 39 H 0.062 0.938 40 H 0.056 0.944 41 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.643 -8.748 11.857 15.778 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.300 6.300 3 C 0.043 3.957 4 H 0.074 0.926 5 C -0.093 4.093 6 N -0.259 5.259 7 C -0.115 4.115 8 C 0.069 3.931 9 C -0.546 4.546 10 H 0.081 0.919 11 C -0.146 4.146 12 N -0.538 5.538 13 Si 0.726 3.274 14 H -0.201 1.201 15 H -0.214 1.214 16 H -0.203 1.203 17 C -0.097 4.097 18 C -0.150 4.150 19 C -0.162 4.162 20 C -0.156 4.156 21 C -0.154 4.154 22 H 0.055 0.945 23 H 0.056 0.944 24 H 0.098 0.902 25 H 0.094 0.906 26 H 0.038 0.962 27 H 0.062 0.938 28 H 0.096 0.904 29 H 0.027 0.973 30 H 0.048 0.952 31 H 0.007 0.993 32 H 0.071 0.929 33 H 0.116 0.884 34 H 0.088 0.912 35 H 0.086 0.914 36 H 0.081 0.919 37 H 0.077 0.923 38 H 0.073 0.927 39 H 0.081 0.919 40 H 0.075 0.925 41 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -5.105 -8.866 12.028 15.790 hybrid contribution -0.459 1.068 -0.802 1.412 sum -5.564 -7.797 11.226 14.758 Atomic orbital electron populations 1.22724 0.82138 1.01910 0.99675 1.87875 1.18585 1.28542 1.94977 1.22158 0.94684 0.83079 0.95732 0.92624 1.22518 0.98872 0.92557 0.95336 1.62023 1.28238 0.99534 1.36062 1.22290 0.92452 0.98960 0.97810 1.19725 0.93361 0.96945 0.83033 1.21119 1.32915 1.03502 0.97037 0.91892 1.24988 0.96552 0.97792 0.95275 1.69952 1.43697 1.38544 1.01655 0.86563 0.79842 0.83887 0.77133 1.20144 1.21378 1.20327 1.21815 0.94054 1.00881 0.92921 1.22318 0.97677 0.97951 0.97069 1.22493 0.97458 1.00135 0.96103 1.22281 0.97118 0.98054 0.98142 1.22140 0.99780 0.96904 0.96579 0.94514 0.94432 0.90238 0.90573 0.96162 0.93830 0.90434 0.97310 0.95177 0.99311 0.92882 0.88384 0.91183 0.91426 0.91918 0.92274 0.92700 0.91911 0.92525 0.92334 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.38 10.88 101.05 1.10 1.48 16 2 O -0.38 -5.67 8.79 -35.23 -0.31 -5.98 16 3 C 0.10 1.59 1.74 -26.73 -0.05 1.54 16 4 H 0.06 0.86 6.18 -51.93 -0.32 0.53 16 5 C 0.04 0.68 4.61 -3.82 -0.02 0.66 16 6 N -0.53 -11.43 4.19 -244.36 -1.02 -12.46 16 7 C 0.03 0.65 9.20 60.06 0.55 1.21 16 8 C 0.19 5.09 4.72 -4.97 -0.02 5.07 16 9 C -0.51 -14.20 8.39 -34.44 -0.29 -14.49 16 10 H 0.06 1.73 7.17 -52.49 -0.38 1.36 16 11 C 0.06 1.57 5.46 -17.82 -0.10 1.47 16 12 N -0.90 -26.84 13.29 55.43 0.74 -26.10 16 13 Si 0.90 21.64 29.54 -169.99 -5.02 16.62 16 14 H -0.28 -6.57 7.11 56.52 0.40 -6.16 16 15 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 16 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 17 C -0.08 -1.20 2.72 -89.51 -0.24 -1.44 16 18 C -0.11 -1.71 5.12 -25.03 -0.13 -1.83 16 19 C -0.12 -1.59 6.91 -24.70 -0.17 -1.76 16 20 C -0.12 -1.42 6.83 -25.07 -0.17 -1.60 16 21 C -0.12 -1.52 6.21 -25.61 -0.16 -1.68 16 22 H 0.04 0.39 7.98 -51.93 -0.41 -0.03 16 23 H 0.04 0.45 8.12 -51.93 -0.42 0.02 16 24 H 0.08 0.78 8.14 -51.93 -0.42 0.35 16 25 H 0.08 1.50 6.75 -51.93 -0.35 1.15 16 26 H 0.02 0.38 7.95 -51.93 -0.41 -0.03 16 27 H 0.04 0.72 6.78 -51.93 -0.35 0.37 16 28 H 0.08 1.62 6.66 -51.93 -0.35 1.27 16 29 H 0.01 0.16 8.02 -51.93 -0.42 -0.25 16 30 H 0.03 0.84 7.87 -51.93 -0.41 0.44 16 31 H -0.01 -0.31 8.12 -51.93 -0.42 -0.73 16 32 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 33 H 0.10 1.69 7.77 -51.93 -0.40 1.28 16 34 H 0.07 1.10 7.05 -51.93 -0.37 0.73 16 35 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 36 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 37 H 0.06 0.70 8.14 -51.92 -0.42 0.27 16 38 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 40 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 41 H 0.06 0.75 7.40 -51.93 -0.38 0.37 16 LS Contribution 319.02 15.07 4.81 4.81 Total: -1.00 -29.28 319.02 -7.99 -37.28 By element: Atomic # 1 Polarization: 4.69 SS G_CDS: -7.49 Total: -2.80 kcal Atomic # 6 Polarization: -11.67 SS G_CDS: 0.31 Total: -11.37 kcal Atomic # 7 Polarization: -38.27 SS G_CDS: -0.29 Total: -38.56 kcal Atomic # 8 Polarization: -5.67 SS G_CDS: -0.31 Total: -5.98 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.02 Total: 16.62 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -29.28 -7.99 -37.28 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595347708.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.743 kcal (2) G-P(sol) polarization free energy of solvation -29.284 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.027 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.993 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.277 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.020 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds