Wall clock time and date at job start Thu Apr 9 2020 15:13:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.33994 * 124.91715 * 2 1 4 4 C 1.46787 * 106.18115 * 179.89772 * 3 2 1 5 5 C 1.39410 * 134.36991 * 180.11527 * 4 3 2 6 6 C 1.36732 * 119.71714 * 180.26603 * 5 4 3 7 7 C 1.38742 * 120.41904 * 0.02562 * 6 5 4 8 8 C 1.50701 * 119.65996 * 180.02562 * 7 6 5 9 9 C 1.50696 * 115.55169 * 234.17733 * 8 7 6 10 10 H 1.07992 * 120.00270 * 263.07136 * 9 8 7 11 11 C 1.37883 * 119.99721 * 83.06807 * 9 8 7 12 12 N 1.31516 * 119.99948 * 353.01160 * 11 9 8 13 13 Si 1.86796 * 120.00078 * 173.01201 * 11 9 8 14 14 H 1.48503 * 109.47038 * 59.99893 * 13 11 9 15 15 H 1.48497 * 109.47402 * 180.02562 * 13 11 9 16 16 H 1.48502 * 109.46924 * 300.00051 * 13 11 9 17 17 C 1.53004 * 117.49680 * 88.51088 * 8 7 6 18 18 C 1.52996 * 117.49806 * 19.85289 * 8 7 6 19 19 C 1.37848 * 120.68429 * 359.97438 * 7 6 5 20 20 C 1.38946 * 119.81943 * 0.02562 * 19 7 6 21 21 O 1.34448 * 124.92526 * 180.30407 * 2 1 3 22 22 H 1.09003 * 109.46827 * 179.72219 * 1 2 3 23 23 H 1.08996 * 109.47444 * 299.71574 * 1 2 3 24 24 H 1.08999 * 109.47158 * 59.72298 * 1 2 3 25 25 H 1.07997 * 126.91440 * 0.02562 * 3 2 1 26 26 H 1.08007 * 120.14038 * 0.24424 * 5 4 3 27 27 H 1.08000 * 119.79279 * 180.02562 * 6 5 4 28 28 H 0.96996 * 120.00126 * 174.94056 * 12 11 9 29 29 H 1.09000 * 117.49772 * 359.97438 * 17 8 7 30 30 H 1.09002 * 117.49819 * 145.02598 * 17 8 7 31 31 H 1.09000 * 117.49985 * 214.98149 * 18 8 7 32 32 H 1.09006 * 117.50031 * 359.97104 * 18 8 7 33 33 H 1.07999 * 120.09526 * 179.97438 * 19 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2740 1.0987 0.0000 4 6 3.6641 0.6272 0.0025 5 6 4.9074 1.2578 0.0057 6 6 6.0490 0.5054 0.0019 7 6 5.9772 -0.8801 -0.0056 8 6 7.2463 -1.6927 -0.0090 9 6 7.3655 -2.7074 -1.1168 10 1 7.1029 -3.7390 -0.9348 11 6 7.8096 -2.3186 -2.3629 12 7 7.9979 -1.0438 -2.6257 13 14 8.1438 -3.6026 -3.6779 14 1 6.8967 -4.3575 -3.9609 15 1 8.6091 -2.9315 -4.9181 16 1 9.1919 -4.5396 -3.1996 17 6 7.8593 -2.0512 1.3462 18 6 8.5292 -1.0011 0.4565 19 6 4.7568 -1.5212 -0.0088 20 6 3.5845 -0.7754 -0.0051 21 8 2.2767 -1.1023 -0.0059 22 1 -0.3633 -1.0277 -0.0050 23 1 -0.3634 0.5094 0.8925 24 1 -0.3633 0.5181 -0.8875 25 1 1.9372 2.1248 0.0004 26 1 4.9685 2.3362 0.0108 27 1 7.0129 0.9927 0.0048 28 1 8.3795 -0.7751 -3.4760 29 1 7.3448 -1.6989 2.2403 30 1 8.3492 -3.0208 1.4364 31 1 9.4594 -1.2802 -0.0383 32 1 8.4553 0.0418 0.7648 33 1 4.7120 -2.6003 -0.0151 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260070430.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 15:13:15 Heat of formation + Delta-G solvation = 46.230708 kcal Electronic energy + Delta-G solvation = -16689.758360 eV Core-core repulsion = 14068.413412 eV Total energy + Delta-G solvation = -2621.344949 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 242.105 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.83183 -38.05129 -35.42144 -32.81869 -31.99383 -30.35604 -29.67037 -26.53302 -25.51115 -22.45436 -21.67022 -21.03719 -20.62217 -18.99798 -16.62652 -16.20985 -15.85515 -15.72253 -14.73090 -14.50018 -13.55908 -13.33768 -13.20512 -13.03074 -12.90299 -12.67881 -12.17032 -11.67520 -11.44666 -11.11105 -11.07993 -10.95592 -10.52070 -10.37646 -10.20944 -9.61958 -9.57865 -8.94483 -8.47956 -8.31542 -7.77812 -7.20727 -6.07244 -4.15320 1.63717 2.21071 2.89734 3.22934 3.29997 3.34832 3.37168 4.37516 4.55004 4.83596 5.20043 5.28592 5.28949 5.35527 5.44700 5.59777 5.66467 5.80697 5.92366 6.03051 6.21034 6.30762 6.40572 6.47478 6.62190 6.69067 6.83189 6.97633 7.03916 7.07583 7.28485 7.38129 7.51044 7.69287 7.82157 7.92553 8.34157 8.85366 9.50933 11.00664 Molecular weight = 242.10amu Principal moments of inertia in cm(-1) A = 0.026160 B = 0.007164 C = 0.006429 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1070.063448 B = 3907.494761 C = 4354.189695 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C 0.006 3.994 3 C -0.206 4.206 4 C -0.156 4.156 5 C -0.086 4.086 6 C -0.117 4.117 7 C 0.036 3.964 8 C 0.068 3.932 9 C -0.496 4.496 10 H 0.063 0.937 11 C 0.075 3.925 12 N -0.869 5.869 13 Si 0.890 3.110 14 H -0.276 1.276 15 H -0.287 1.287 16 H -0.276 1.276 17 C -0.199 4.199 18 C -0.157 4.157 19 C -0.105 4.105 20 C 0.051 3.949 21 O -0.200 6.200 22 H 0.074 0.926 23 H 0.082 0.918 24 H 0.082 0.918 25 H 0.147 0.853 26 H 0.114 0.886 27 H 0.125 0.875 28 H 0.261 0.739 29 H 0.068 0.932 30 H 0.082 0.918 31 H 0.083 0.917 32 H 0.068 0.932 33 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.118 3.888 5.139 11.166 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.041 4.041 3 C -0.226 4.226 4 C -0.157 4.157 5 C -0.104 4.104 6 C -0.135 4.135 7 C 0.035 3.965 8 C 0.068 3.932 9 C -0.534 4.534 10 H 0.081 0.919 11 C -0.130 4.130 12 N -0.504 5.504 13 Si 0.717 3.283 14 H -0.201 1.201 15 H -0.212 1.212 16 H -0.201 1.201 17 C -0.236 4.236 18 C -0.194 4.194 19 C -0.123 4.123 20 C 0.004 3.996 21 O -0.103 6.103 22 H 0.093 0.907 23 H 0.101 0.899 24 H 0.101 0.899 25 H 0.165 0.835 26 H 0.132 0.868 27 H 0.143 0.857 28 H 0.071 0.929 29 H 0.086 0.914 30 H 0.101 0.899 31 H 0.102 0.898 32 H 0.087 0.913 33 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -9.212 3.762 4.955 11.116 hybrid contribution 0.300 -0.346 -0.972 1.074 sum -8.912 3.417 3.983 10.343 Atomic orbital electron populations 1.20310 0.85639 1.03843 1.03206 1.22093 0.93632 0.84308 1.04065 1.22084 0.91230 0.98568 1.10687 1.19733 0.93646 0.93104 1.09237 1.20111 0.90389 0.98943 1.00964 1.20762 0.97790 0.93921 1.01015 1.19558 0.93861 0.92613 0.90422 1.17657 0.86993 0.96394 0.92160 1.20329 1.46179 0.93258 0.93587 0.91918 1.24974 0.95038 0.95130 0.97828 1.70017 1.42044 1.14434 1.23904 0.86701 0.78852 0.81750 0.81027 1.20106 1.21225 1.20106 1.23040 1.06380 0.99871 0.94289 1.22646 0.99012 0.94707 1.03064 1.19668 0.87101 0.99700 1.05860 1.19658 0.82413 0.93662 1.03826 1.83876 1.15620 1.33736 1.77063 0.90681 0.89925 0.89890 0.83522 0.86806 0.85724 0.92873 0.91379 0.89938 0.89802 0.91336 0.85585 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.75 10.39 36.01 0.37 -0.38 16 2 C 0.01 0.10 7.23 -35.80 -0.26 -0.16 16 3 C -0.21 -3.41 11.01 -37.62 -0.41 -3.82 16 4 C -0.16 -3.14 6.40 -105.16 -0.67 -3.81 16 5 C -0.09 -1.69 10.05 -39.69 -0.40 -2.09 16 6 C -0.12 -2.54 9.23 -39.94 -0.37 -2.91 16 7 C 0.04 0.85 5.25 -104.58 -0.55 0.30 16 8 C 0.07 1.66 1.57 -156.81 -0.25 1.42 16 9 C -0.50 -13.29 8.52 -34.44 -0.29 -13.58 16 10 H 0.06 1.66 7.82 -52.49 -0.41 1.25 16 11 C 0.08 2.03 5.40 -17.82 -0.10 1.93 16 12 N -0.87 -24.27 13.03 55.43 0.72 -23.55 16 13 Si 0.89 20.97 29.55 -169.99 -5.02 15.95 16 14 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 15 H -0.29 -6.74 7.11 56.52 0.40 -6.33 16 16 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 17 C -0.20 -4.23 9.94 -26.69 -0.27 -4.50 16 18 C -0.16 -3.55 9.12 -26.70 -0.24 -3.79 16 19 C -0.10 -2.39 9.44 -39.46 -0.37 -2.76 16 20 C 0.05 1.09 7.42 -38.47 -0.29 0.81 16 21 O -0.20 -3.91 10.58 3.93 0.04 -3.87 16 22 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 23 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 24 H 0.08 0.71 8.14 -51.93 -0.42 0.28 16 25 H 0.15 1.94 8.06 -52.49 -0.42 1.51 16 26 H 0.11 1.89 8.06 -52.48 -0.42 1.47 16 27 H 0.12 2.63 6.37 -52.49 -0.33 2.29 16 28 H 0.26 7.03 8.32 -40.82 -0.34 6.69 16 29 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 30 H 0.08 1.71 8.14 -51.93 -0.42 1.28 16 31 H 0.08 1.99 8.14 -51.93 -0.42 1.57 16 32 H 0.07 1.44 6.53 -51.93 -0.34 1.10 16 33 H 0.13 2.81 8.05 -52.49 -0.42 2.39 16 LS Contribution 287.49 15.07 4.33 4.33 Total: -1.00 -29.57 287.49 -8.04 -37.61 By element: Atomic # 1 Polarization: 6.90 SS G_CDS: -4.02 Total: 2.87 kcal Atomic # 6 Polarization: -29.26 SS G_CDS: -4.09 Total: -33.35 kcal Atomic # 7 Polarization: -24.27 SS G_CDS: 0.72 Total: -23.55 kcal Atomic # 8 Polarization: -3.91 SS G_CDS: 0.04 Total: -3.87 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.02 Total: 15.95 kcal Total LS contribution 4.33 Total: 4.33 kcal Total: -29.57 -8.04 -37.61 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260070430.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.842 kcal (2) G-P(sol) polarization free energy of solvation -29.570 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.271 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.040 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.611 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.231 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds